These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 813 fasta sequence [GAACTTCAGACACAGGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCAAATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCGGCTCCNCGGCCNGCGCGGNACGCCCCCCGCCCAGGGCGAGGCTCCATGGTGGTACGCGCGCGCGCCTACGACGACCAGCTCATCACCAGCGTCGTAGCTACCCAATAATCTTGGCTCCACTCTTGAATTGCTCTGGTGCTAGGGAGAAACGCCCAATGGTGGTCCGGGTAGCTCCATGAAGCGGCGGGCTAGACAATCTTGGGACGAAGCTTCGCGACACATAATTACTGCAGAAGATATTATGAGCTTTCCTAATATCCGGGAGGCTGTGGTCGACGGCTTGAGATCACCTGACGGACCGAGTCGCTGCGGATCAATGGACAGGCGCGGTGCTCCGGGGATGGCGAACGACTGATGGGCGAGTCGACGCGCGTGCGGGTGGAGCCGACGTGACGGATAGGCCTGAGGAGTGACGCTGGTGAGCCGATGCCTGGTGGGCATTGGGCGCGGAGTCTCCGAGGGGCGTACGGCGGGAGTATGCGGTCAGGAGAGGTGTCGAGGAGCCTGGCAGGGGCGAGAGGGCGCGTGCAAGTGGAGGGGGCGGCACGACCAGTGATGGAGTCGCGATAGCGGGGATGGCGCGCTGGGGGTGGCTGAGACGGGAGGTAGGAGCTGAGGGGATCGGACGTATGGGGCTGCGTGTGCGGCGAGGAGGGGGAGGAGGGGCGTGCGGATAGTGACGGGTGAGTCGAGGCGTGCACGCG] [+] EMBL AW155130 [GAACTTCAGACACAGGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCAAATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCGGCTCCNCGGCCNGCGCGGNACGCCCCCCGCCCAGGGCGAGGCTCCATGGTGGTACGCGCGCGCGCCTACGACGACCAGCTCATCACCAGCGTCGTAGCTACCCAATAATCTTGGCTCCACTCTTGAATTGCTCTGGTGCTAGGGAGAAACGCCCAATGGTGGTCCGGGTAGCTCCATGAAGCGGCGGGCTAGACAATCTTGGGACGAAGCTTCGCGACACATAATTACTGCAGAAGATATTATGAGCTTTCCTAATATCCGGGAGGCTGTGGTCGACGGCTTGAGATCACCTGACGGACCGAGTCGCTGCGGATCAATGGACAGGCGCGGTGCTCCGGGGATGGCGAACGACTGATGGGCGAGTCGACGCGCGTGCGGGTGGAGCCGACGTGACGGATAGGCCTGAGGAGTGACGCTGGTGAGCCGATGCCTGGTGGGCATTGGGCGCGGAGTCTCCGAGGGGCGTACGGCGGGAGTATGCGGTCAGGAGAGGTGTCGAGGAGCCTGGCAGGGGCGAGAGGGCGCGTGCAAGTGGAGGGGGCGGCACGACCAGTGATGGAGTCGCGATAGCGGGGATGGCGCGCTGGGGGTGGCTGAGACGGGAGGTAGGAGCTGAGGGGATCGGACGTATGGGGCTGCGTGTGCGGCGAGGAGGGGGAGGAGGGGCGTGCGGATAGTGACGGGTGAGTCGAGGCGTGCACGCG] consensusID : consensus_524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [GGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCAAATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCAGCTCCCCGCCCCCCGCCCCCCGCCCCCCGCCCGCCGTTCGTCTCCATGGTCGTCCGCGCCGGCGCCTACGACGACGAGCTCATCAAAACCGCCGTAAAAACCCAATAATCTTCAATCCAGTCTTGAATTGTTCTGGTGCTTGGGAGAAACGCCCAATGGTTTTCCGGCTAGCTCCATGAAGCGGTGGGCTAGACAATCTTGGTTCGAAGCTTCACCACTTCTAATTACTACATTTGATATTAGGTTCTTTCCTAATATTCGTGTTTTTTTTGCTCTTGTGCTTGGGATTTCATTAAAAACCGAGTCATTGTGGATTAATTTAAAACGGTGGCGTCCCC] [+] EMBL CB636217 [GGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCAAATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCAGCTCCCCGCCCCCCGCCCCCCGCCCCCCGCCCGCCGTTCGTCTCCATGGTCGTCCGCGCCGGCGCCTACGACGACGAGCTCATCAAAACCGCCGTAAAAACCCAATAATCTTCAATCCAGTCTTGAATTGTTCTGGTGCTTGGGAGAAACGCCCAATGGTTTTCCGGCTAGCTCCATGAAGCGGTGGGCTAGACAATCTTGGTTCGAAGCTTCACCACTTCTAATTACTACATTTGATATTAGGTTCTTTCCTAATATTCGTGTTTTTTTTGCTCTTGTGCTTGGGATTTCATTAAAAACCGAGTCATTGTGGATTAATTTAAAACGGTGGCGTCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_524#0 GAACTTCAGACACAGGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCA 60 consensus_524#1 --------------GGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCA 46 ********************************************** consensus_524#0 AATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCGGCTCCNCGGCC 120 consensus_524#1 AATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCAGCTCCCCGCCC 106 ************************************************ ***** ** ** consensus_524#0 NGCGCGGNACGCCCCCCGCCCAGGGCGAGGCTCCATGGTGGTACGCGCGCGCGCCTACGA 180 consensus_524#1 CCCGCCCCCCGCCCCCCGCCCGCCGTTCGTCTCCATGGTCGTCCGCGCCGGCGCCTACGA 166 *** ************ * * ********* ** ***** ********** consensus_524#0 CGACCAGCTCATCACCAGCGTCGTAGCTACCCAATAATCTTGGCTCCACTCTTGAATTGC 240 consensus_524#1 CGACGAGCTCATCAAAACCGCCGTAAAAACCCAATAATCTTCAATCCAGTCTTGAATTGT 226 **** ********* * ** **** ************* **** ********** consensus_524#0 TCTGGTGCTAGGGAGAAACGCCCAATGGTGGTCCGGGTAGCTCCATGAAGCGGCGGGCTA 300 consensus_524#1 TCTGGTGCTTGGGAGAAACGCCCAATGGTTTTCCGGCTAGCTCCATGAAGCGGTGGGCTA 286 ********* ******************* ***** **************** ****** consensus_524#0 GACAATCTTGGGACGAAGCTTCGCGACACATAATTACTGCAGAAGATATTATGAGCTTTC 360 consensus_524#1 GACAATCTTGGTTCGAAGCTTCACCACTTCTAATTACTACATTTGATATTAGGTTCTTTC 346 *********** ********* * ** ******** ** ******* * ***** consensus_524#0 CTAATATCCGGGAGGCTGTGGTCGACG-GCTTGAGATCACCTGACGGACCGAGTCGCTGC 419 consensus_524#1 CTAATATTCGTGTTTTTTTTGCTCTTGTGCTTGGGATTTCATTAAAAACCGAGTCATTGT 406 ******* ** * * * * * ***** *** * * * ******** ** consensus_524#0 GGATCAATGGACAGGCGCGGTGCTCCGGGGATGGCGAACGACTGATGGGCGAGTCGACGC 479 consensus_524#1 GGATTAATTTAAAACGGTGGCGTCCCC--------------------------------- 433 **** *** * * * ** * ** consensus_524#0 GCGTGCGGGTGGAGCCGACGTGACGGATAGGCCTGAGGAGTGACGCTGGTGAGCCGATGC 539 consensus_524#1 ------------------------------------------------------------ consensus_524#0 CTGGTGGGCATTGGGCGCGGAGTCTCCGAGGGGCGTACGGCGGGAGTATGCGGTCAGGAG 599 consensus_524#1 ------------------------------------------------------------ consensus_524#0 AGGTGTCGAGGAGCCTGGCAGGGGCGAGAGGGCGCGTGCAAGTGGAGGGGGCGGCACGAC 659 consensus_524#1 ------------------------------------------------------------ consensus_524#0 CAGTGATGGAGTCGCGATAGCGGGGATGGCGCGCTGGGGGTGGCTGAGACGGGAGGTAGG 719 consensus_524#1 ------------------------------------------------------------ consensus_524#0 AGCTGAGGGGATCGGACGTATGGGGCTGCGTGTGCGGCGAGGAGGGGGAGGAGGGGCGTG 779 consensus_524#1 ------------------------------------------------------------ consensus_524#0 CGGATAGTGACGGGTGAGTCGAGGCGTGCACGCG 813 consensus_524#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||