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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2093 fasta sequence
[GGGACCAAACTTTAAACCAGCTGCTTACTGAGATGGATGGTTTTGACTCGGACATGAAAGTTATTGTCATGGCTGCTACTAATAGGCCTAAAGCACTGGACCCTGCTCTGTGTCGCCCTGGTCGGTTCTTAAGAAAAGTTTTGGTTGGTGTGCCTGATTTGGAGGGGCGAAGGAATACTTTGGCTGTTCATTTAAGGGACGTTCCTTTGGAAGAGGATCCTGAAATAATTTGTGATCTGGTTGCTAGTTTAACACCAGGATTGGTTGGTGCGGATCTAGCAAACATTGTGAATGAGGCTGCGTTACTAGCTGCTCGAAGGGGTGGCAATACTGTGGCTCGGGAGGATATTATGGATGCAATTGAGAGGGAGAAATATGGGGTCAATGGTAGACAAGAGAATGCTGATTCTGAAAGGCAAGGCCTCACTAAATTGTTTCCATGGTTACCTAAACCTGGAAATAGACCAACAAACCCAGATGATATTGGAGGAGTTATGGGATATCATACATTAAGCTAACTGGAGGCTTTGCAAGGAAGAAAGAAGTTAAGCTGCAATCAAAATGGTGTTTGAATTGCCAACGTACATGGGAACATGTCGGTTATAGTCGTGTAGGAGCAAATATGCGTCTCTACTGTACATGTGAAGGATACTGCACTCTTCTGAGTTTTGGGGCTGCAAATTTAGGTGCTTGGAGGAGAAAACTGCCACCAAATCAGAAGAAATCAAGCTTCTGAATGTGAAACACGGAGGTCCAAGGATTTCACTTGACAACAATCTTGCGCTCTGTAGTCTTTGCTAGAAGCACTACATCTGGTTTTGTTCCATAGACAAATTGTTAATAGAACAATTAGAATTAGATTACAGGATAAGGTCGCTCCAGTGTTCTGCTGTATACATACCATCAGCCATTCAGCTCATTCGTGCAAACCAGAAGTTATGCTGCTGCTGGGTCCGCGACAATATGTAAGTTTGCAAATCACAATTAGAGACGAGCACTCCTTACCATTTCAAATTGTGCATCGCTTTGCTTTACCTAAGCACTAGTCTCTTCACGTTGTTCATCATTTTTCTTCAACTGAACTTTCTCCTACTGCTACAATTCTATAAATCTGCAGGTATCAAAGTATGAATAGATTATACACCTTTCAACTTTCAAATTTGAACTTCTCTGTAGTACTCATTGTCCTGTGTTATCTATGTGCCATTTTCTTCTGCATTTGCTTGGTAAACTCTGATGTGCCTGCATGACTTCAGCATTACTGCTAAACCTGATCACAAACAGGGGATTACTGGTGGATTGCCAAGTGGGTTCCATGACAGTTAGTCGGAGAACGACCCGGCGGCTTGACCCAGAAAAAAGGCCATCTGCTGTCAGAGACACACATCCCGTCCTGAAGACGACATGACCTTAATAATTGGGAAGCCATGCAATGGCTGCAGAATCAGGACATATACCCTTGAGACAAAGATGAAGCTTCTCCCAGCAAGAAAAAATGTTGTGTAAAGGGCAGAGCTTTGGCATGTAGACCTCGACCTGTCATACACCGGAATGAAGAGTGTGGTTTGGCTTTTTGTGTTCTTTCTTCTGGGCTGCTTAACCAACCATGCTTATCTCTGCAGGATCAGGTCACAGGGATCAAAGGGGGGAATAAAATGGAAACTGATGGGAATAAAATGGAAACTGATTTGTAGCTTTCAATGTTTCGTTCTCAGCTTTGCTATTAGCTTTCTCCTGATGATTTAGAGGCCATGGTGGTCTCAGTTCATGCATCTATGACCTGAATGAATGAAGCTTGTCCTGCACTTCAGATCGATCGGAGTTTCTGTGTGCATATCTAAACTGCTGAGTTTTGGGCTTTTGGCCTGACACTGTTCTGCCTAAATTTTTCAGAAATGCCTTCCTAGCTACTAGCTAGGTCATGAGCTATAGCCATCAAGACTGTTCGAGTAGTTTAGTTAGCAAAAAACAAGACTACAGAATGCCTACTGACAAGTTGCCACAAAATATAATCATCTGGTATATATAATCAGCTTCATGTTAATATTTGAGAACGCACGCTTAATTATTTAGACGATGATGACAACGGCGTG]
[+] EMBL AK064543 [GGGACCAAACTTTAAACCAGCTGCTTACTGAGATGGATGGTTTTGACTCGGACATGAAAGTTATTGTCATGGCTGCTACTAATAGGCCTAAAGCACTGGACCCTGCTCTGTGTCGCCCTGGTCGGTTCTTAAGAAAAGTTTTGGTTGGTGTGCCTGATTTGGAGGGGCGAAGGAATACTTTGGCTGTTCATTTAAGGGACGTTCCTTTGGAAGAGGATCCTGAAATAATTTGTGATCTGGTTGCTAGTTTAACACCAGGATTGGTTGGTGCGGATCTAGCAAACATTGTGAATGAGGCTGCGTTACTAGCTGCTCGAAGGGGTGGCAATACTGTGGCTCGGGAGGATATTATGGATGCAATTGAGAGGGAGAAATATGGGGTCAATGGTAGACAAGAGAATGCTGATTCTGAAAGGCAAGGCCTCACTAAATTGTTTCCATGGTTACCTAAACCTGGAAATAGACCAACAAACCCAGATGATATTGGAGGAGTTATGGGATATCATACATTAAGCTAACTGGAGGCTTTGCAAGGAAGAAAGAAGTTAAGCTGCAATCAAAATGGTGTTTGAATTGCCAACGTACATGGGAACATGTCGGTTATAGTCGTGTAGGAGCAAATATGCGTCTCTACTGTACATGTGAAGGATACTGCACTCTTCTGAGTTTTGGGGCTGCAAATTTAGGTGCTTGGAGGAGAAAACTGCCACCAAATCAGAAGAAATCAAGCTTCTGAATGTGAAACACGGAGGTCCAAGGATTTCACTTGACAACAATCTTGCGCTCTGTAGTCTTTGCTAGAAGCACTACATCTGGTTTTGTTCCATAGACAAATTGTTAATAGAACAATTAGAATTAGATTACAGGATAAGGTCGCTCCAGTGTTCTGCTGTATACATACCATCAGCCATTCAGCTCATTCGTGCAAACCAGAAGTTATGCTGCTGCTGGGTCCGCGACAATATGTAAGTTTGCAAATCACAATTAGAGACGAGCACTCCTTACCATTTCAAATTGTGCATCGCTTTGCTTTACCTAAGCACTAGTCTCTTCACGTTGTTCATCATTTTTCTTCAACTGAACTTTCTCCTACTGCTACAATTCTATAAATCTGCAGGTATCAAAGTATGAATAGATTATACACCTTTCAACTTTCAAATTTGAACTTCTCTGTAGTACTCATTGTCCTGTGTTATCTATGTGCCATTTTCTTCTGCATTTGCTTGGTAAACTCTGATGTGCCTGCATGACTTCAGCATTACTGCTAAACCTGATCACAAACAGGGGATTACTGGTGGATTGCCAAGTGGGTTCCATGACAGTTAGTCGGAGAACGACCCGGCGGCTTGACCCAGAAAAAAGGCCATCTGCTGTCAGAGACACACATCCCGTCCTGAAGACGACATGACCTTAATAATTGGGAAGCCATGCAATGGCTGCAGAATCAGGACATATACCCTTGAGACAAAGATGAAGCTTCTCCCAGCAAGAAAAAATGTTGTGTAAAGGGCAGAGCTTTGGCATGTAGACCTCGACCTGTCATACACCGGAATGAAGAGTGTGGTTTGGCTTTTTGTGTTCTTTCTTCTGGGCTGCTTAACCAACCATGCTTATCTCTGCAGGATCAGGTCACAGGGATCAAAGGGGGGAATAAAATGGAAACTGATGGGAATAAAATGGAAACTGATTTGTAGCTTTCAATGTTTCGTTCTCAGCTTTGCTATTAGCTTTCTCCTGATGATTTAGAGGCCATGGTGGTCTCAGTTCATGCATCTATGACCTGAATGAATGAAGCTTGTCCTGCACTTCAGATCGATCGGAGTTTCTGTGTGCATATCTAAACTGCTGAGTTTTGGGCTTTTGGCCTGACACTGTTCTGCCTAAATTTTTCAGAAATGCCTTCCTAGCTACTAGCTAGGTCATGAGCTATAGCCATCAAGACTGTTCGAGTAGTTTAGTTAGCAAAAAACAAGACTACAGAATGCCTACTGACAAGTTGCCACAAAATATAATCATCTGGTATATATAATCAGCTTCATGTTAATATTTGAGAACGCACGCTTAATTATTTAGACGATGATGACAACGGCGTG]
[-] EMBL CB638102 [ GTAGACAAGAGAATGCTGATTCTGAAAGGCAAGGCCTCACTAAATTGTTTCCATGGTTACCTAAACCTGGAAATAGACCAACAAACCCAGATGATATTGGAGGAGTTATGGGATATCATACATTAAGCTAACTGGAGGCTTTGCAAGGAAGAAAGAAGTTAAGCTGCAATCAAAATGGTGTTTGAATTGCCAACGTACATGGGAACATGTCGGTTATAGTCGTGTAGGAGCAAATATGCGTCTCTACTGTACATGTGAAGGATACTGCACTCTTCTGAGTTTTGGGGCTGCAAATTTAGGTGCTTGGAGGAGAAAACTGCCACCAAATCAGAAGAAATCAAGCTTCTGAATGTGAAACACGGAGGTCCAAGGATTTCACTTGACAACAATCTTGCGCTCTGTAGTCTTTGCTAGAAGCACTACATCTGGTTTTGTTCCATAGACAAATTGTTAATAGAACAATTAGAATTAGATTACAGGATAAGGTCGCTCCAGTGTTCTGCTGTATACATACCATCAGCCATTCAGCTCATTCGTGCAAACCAGAAGTTATGCTGCTGCTGGGTCCGCGACAATATGTAAGTTTGCAAATCACAATTAGAGACGAGCACTCC ]
consensusID : consensus_5240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence
[TAGACCTCGACCTGTCATACACCGGAATGAAGGGTGTGGTTTGGCTTTTTGTGTTCTTTCTTCTGGGCTGCTTAACCAACCATGCTTATCTCTGCAGGATCAGAGTCACAGGGATCAAAGGGGGGAATAAAAATGATCGAAACTGATGGGAATAAAATGGCAACTGATTGATGCCTTCATGTCTGACCTCTCAGCTT]
[+] EMBL AA751128 [TAGACCTCGACCTGTCATACACCGGAATGAAGGGTGTGGTTTGGCTTTTTGTGTTCTTTCTTCTGGGCTGCTTAACCAACCATGCTTATCTCTGCAGGATCAGAGTCACAGGGATCAAAGGGGGGAATAAAAATGATCGAAACTGATGGGAATAAAATGGCAACTGATTGATGCCTTCATGTCTGACCTCTCAGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5240#0 GGGACCAAACTTTAAACCAGCTGCTTACTGAGATGGATGGTTTTGACTCGGACATGAAAG 60
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TTATTGTCATGGCTGCTACTAATAGGCCTAAAGCACTGGACCCTGCTCTGTGTCGCCCTG 120
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 GTCGGTTCTTAAGAAAAGTTTTGGTTGGTGTGCCTGATTTGGAGGGGCGAAGGAATACTT 180
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TGGCTGTTCATTTAAGGGACGTTCCTTTGGAAGAGGATCCTGAAATAATTTGTGATCTGG 240
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TTGCTAGTTTAACACCAGGATTGGTTGGTGCGGATCTAGCAAACATTGTGAATGAGGCTG 300
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 CGTTACTAGCTGCTCGAAGGGGTGGCAATACTGTGGCTCGGGAGGATATTATGGATGCAA 360
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TTGAGAGGGAGAAATATGGGGTCAATGGTAGACAAGAGAATGCTGATTCTGAAAGGCAAG 420
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 GCCTCACTAAATTGTTTCCATGGTTACCTAAACCTGGAAATAGACCAACAAACCCAGATG 480
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 ATATTGGAGGAGTTATGGGATATCATACATTAAGCTAACTGGAGGCTTTGCAAGGAAGAA 540
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 AGAAGTTAAGCTGCAATCAAAATGGTGTTTGAATTGCCAACGTACATGGGAACATGTCGG 600
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TTATAGTCGTGTAGGAGCAAATATGCGTCTCTACTGTACATGTGAAGGATACTGCACTCT 660
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TCTGAGTTTTGGGGCTGCAAATTTAGGTGCTTGGAGGAGAAAACTGCCACCAAATCAGAA 720
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 GAAATCAAGCTTCTGAATGTGAAACACGGAGGTCCAAGGATTTCACTTGACAACAATCTT 780
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 GCGCTCTGTAGTCTTTGCTAGAAGCACTACATCTGGTTTTGTTCCATAGACAAATTGTTA 840
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 ATAGAACAATTAGAATTAGATTACAGGATAAGGTCGCTCCAGTGTTCTGCTGTATACATA 900
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 CCATCAGCCATTCAGCTCATTCGTGCAAACCAGAAGTTATGCTGCTGCTGGGTCCGCGAC 960
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 AATATGTAAGTTTGCAAATCACAATTAGAGACGAGCACTCCTTACCATTTCAAATTGTGC 1020
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 ATCGCTTTGCTTTACCTAAGCACTAGTCTCTTCACGTTGTTCATCATTTTTCTTCAACTG 1080
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 AACTTTCTCCTACTGCTACAATTCTATAAATCTGCAGGTATCAAAGTATGAATAGATTAT 1140
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 ACACCTTTCAACTTTCAAATTTGAACTTCTCTGTAGTACTCATTGTCCTGTGTTATCTAT 1200
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 GTGCCATTTTCTTCTGCATTTGCTTGGTAAACTCTGATGTGCCTGCATGACTTCAGCATT 1260
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 ACTGCTAAACCTGATCACAAACAGGGGATTACTGGTGGATTGCCAAGTGGGTTCCATGAC 1320
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 AGTTAGTCGGAGAACGACCCGGCGGCTTGACCCAGAAAAAAGGCCATCTGCTGTCAGAGA 1380
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 CACACATCCCGTCCTGAAGACGACATGACCTTAATAATTGGGAAGCCATGCAATGGCTGC 1440
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 AGAATCAGGACATATACCCTTGAGACAAAGATGAAGCTTCTCCCAGCAAGAAAAAATGTT 1500
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 GTGTAAAGGGCAGAGCTTTGGCATGTAGACCTCGACCTGTCATACACCGGAATGAAGAGT 1560
consensus_5240#1 -------------------------TAGACCTCGACCTGTCATACACCGGAATGAAGGGT 35
******************************** **
consensus_5240#0 GTGGTTTGGCTTTTTGTGTTCTTTCTTCTGGGCTGCTTAACCAACCATGCTTATCTCTGC 1620
consensus_5240#1 GTGGTTTGGCTTTTTGTGTTCTTTCTTCTGGGCTGCTTAACCAACCATGCTTATCTCTGC 95
************************************************************
consensus_5240#0 AGGATCAG-GTCACAGGGATCAAAGGGGGGAATAAAA----TGGAAACTGATGGGAATAA 1675
consensus_5240#1 AGGATCAGAGTCACAGGGATCAAAGGGGGGAATAAAAATGATCGAAACTGATGGGAATAA 155
******** **************************** * *****************
consensus_5240#0 AATGGAAACTGATTTGTAGCTTTCAATGTTTCGTTCTCAGCTTTGCTATTAGCTTTCTCC 1735
consensus_5240#1 AATGGCAACTGATTGAT-GCCTTCATGTCTGACCTCTCAGCTT----------------- 197
***** ******** * ** **** * *********
consensus_5240#0 TGATGATTTAGAGGCCATGGTGGTCTCAGTTCATGCATCTATGACCTGAATGAATGAAGC 1795
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TTGTCCTGCACTTCAGATCGATCGGAGTTTCTGTGTGCATATCTAAACTGCTGAGTTTTG 1855
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 GGCTTTTGGCCTGACACTGTTCTGCCTAAATTTTTCAGAAATGCCTTCCTAGCTACTAGC 1915
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TAGGTCATGAGCTATAGCCATCAAGACTGTTCGAGTAGTTTAGTTAGCAAAAAACAAGAC 1975
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TACAGAATGCCTACTGACAAGTTGCCACAAAATATAATCATCTGGTATATATAATCAGCT 2035
consensus_5240#1 ------------------------------------------------------------
consensus_5240#0 TCATGTTAATATTTGAGAACGCACGCTTAATTATTTAGACGATGATGACAACGGCGTG 2093
consensus_5240#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||