These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1449 fasta sequence [CGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCGCCGCCGCCGCCGCCGCCTTCGGCCACCGGCCACCGCCGCCTCCCGACCGGCCGCCATGGCGCGAAACGAGGAGAAGGCTCAGTCCATGCTGAACCGCTTCATCACGATGAAGCAGGAGGAGAAGCGGAAGCCACGGGAGCGGCGGCCGTACCTCGCCTCCGAGTGCCGCGACCTCGCCGACGCCGAGCGGTGGCGCTCCGAGATCCTCCGCGAGATCGGCGCCAAGGTCGCCGAGATCCAGAACGAGGGCCTCGGGGAGCACCGCCTCCGCGACCTCAACGACGAGATCAACAAGCTCCTCCGCGAGCGCGGCCACTGGGAGCGCCGCATCGTCGAGCTCGGCGGCCGCGACCACTCCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGGCAACATCGTCGCCATACCCAACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCGTCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCCACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGCGGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTGTGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAGGTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTGAGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAGAAT] [+] EMBL AK064340 [CGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCGCCGCCGCCGCCGCCGCCTTCGGCCACCGGCCACCGCCGCCTCCCGACCGGCCGCCATGGCGCGAAACGAGGAGAAGGCTCAGTCCATGCTGAACCGCTTCATCACGATGAAGCAGGAGGAGAAGCGGAAGCCACGGGAGCGGCGGCCGTACCTCGCCTCCGAGTGCCGCGACCTCGCCGACGCCGAGCGGTGGCGCTCCGAGATCCTCCGCGAGATCGGCGCCAAGGTCGCCGAGATCCAGAACGAGGGCCTCGGGGAGCACCGCCTCCGCGACCTCAACGACGAGATCAACAAGCTCCTCCGCGAGCGCGGCCACTGGGAGCGCCGCATCGTCGAGCTCGGCGGCCGCGACCACTCCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGGCAACATCGTCGCCATACCCAACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCGTCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCCACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGCGGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTGTGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAGGTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTGAGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAGAA ] [+] EMBL CA767210 [ GACGA GACAAGGGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATGTTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAGAAT] consensusID : consensus_5242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1117 fasta sequence [TCTTCCCCACCCAACCCGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCGCCGCGACCACTCCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGACAACATCGTCGCCATACCCAACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCGTCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCCACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGCGGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTGTGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAGGTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTGAGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAG] [+] EMBL AK073602 [TCTTCCCCACCCAACCCGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCGCCGCGACCACTCCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGACAACATCGTCGCCATACCCAACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCGTCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCCACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGCGGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTGTGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAGGTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTGAGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5242#0 CGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAAC 60 consensus_5242#1 ------------------------------------------------------------ consensus_5242#0 CTCGCCGCCGCCGCCGCCGCCTTCGGCCACCGGCCACCGCCGCCTCCCGACCGGCCGCCA 120 consensus_5242#1 ------------------------------------------------------------ consensus_5242#0 TGGCGCGAAACGAGGAGAAGGCTCAGTCCATGCTGAACCGCTTCATCACGATGAAGCAGG 180 consensus_5242#1 ------------------------------------------------------------ consensus_5242#0 AGGAGAAGCGGAAGCCACGGGAGCGGCGGCCGTACCTCGCCTCCGAGTGCCGCGACCTCG 240 consensus_5242#1 ------------------------------------------------------------ consensus_5242#0 CCGACGCCGAGCGGTGGCGCTCCGAGATCCTCCGCGAGATCGGCGCCAAGGTCGCCGAGA 300 consensus_5242#1 ------------------------------------------------------------ consensus_5242#0 TCCAGAACGAGGGCCTCGGGGAGCACCGCCTCCGCGACCTCAACGACGAGATCAACAAGC 360 consensus_5242#1 ----------------------------TCTTCCCCACCCAACCCGCAAATCCCCAAATC 32 ** * * *** * * * * * ** * consensus_5242#0 TCCTCCGCGAGCGCGGCCACTGGGAGCGCCGCATCGTCGAGCTCGGCGGCCGCGACCACT 420 consensus_5242#1 GAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCG-CCGCGACCACT 91 **** * * ** * ** * * ** * ** *********** consensus_5242#0 CCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGGCAACATCGTCGCCATACCCA 480 consensus_5242#1 CCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGACAACATCGTCGCCATACCCA 151 *************************************** ******************** consensus_5242#0 ACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCG 540 consensus_5242#1 ACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCG 211 ************************************************************ consensus_5242#0 TCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCC 600 consensus_5242#1 TCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCC 271 ************************************************************ consensus_5242#0 ACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGC 660 consensus_5242#1 ACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGC 331 ************************************************************ consensus_5242#0 GGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTG 720 consensus_5242#1 GGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTG 391 ************************************************************ consensus_5242#0 TGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAG 780 consensus_5242#1 TGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAG 451 ************************************************************ consensus_5242#0 GTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTG 840 consensus_5242#1 GTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTG 511 ************************************************************ consensus_5242#0 AGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGA 900 consensus_5242#1 AGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGA 571 ************************************************************ consensus_5242#0 AGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGG 960 consensus_5242#1 AGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGG 631 ************************************************************ consensus_5242#0 AGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGG 1020 consensus_5242#1 AGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGG 691 ************************************************************ consensus_5242#0 AAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAA 1080 consensus_5242#1 AAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAA 751 ************************************************************ consensus_5242#0 TCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCT 1140 consensus_5242#1 TCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCT 811 ************************************************************ consensus_5242#0 GAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGC 1200 consensus_5242#1 GAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGC 871 ************************************************************ consensus_5242#0 AAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAA 1260 consensus_5242#1 AAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAA 931 ************************************************************ consensus_5242#0 CCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTC 1320 consensus_5242#1 CCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTC 991 ************************************************************ consensus_5242#0 TAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTA 1380 consensus_5242#1 TAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTA 1051 ************************************************************ consensus_5242#0 AAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTG 1440 consensus_5242#1 AAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTG 1111 ************************************************************ consensus_5242#0 CAAGAGAAT 1449 consensus_5242#1 CAAGAG--- 1117 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||