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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1449 fasta sequence
[CGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCGCCGCCGCCGCCGCCGCCTTCGGCCACCGGCCACCGCCGCCTCCCGACCGGCCGCCATGGCGCGAAACGAGGAGAAGGCTCAGTCCATGCTGAACCGCTTCATCACGATGAAGCAGGAGGAGAAGCGGAAGCCACGGGAGCGGCGGCCGTACCTCGCCTCCGAGTGCCGCGACCTCGCCGACGCCGAGCGGTGGCGCTCCGAGATCCTCCGCGAGATCGGCGCCAAGGTCGCCGAGATCCAGAACGAGGGCCTCGGGGAGCACCGCCTCCGCGACCTCAACGACGAGATCAACAAGCTCCTCCGCGAGCGCGGCCACTGGGAGCGCCGCATCGTCGAGCTCGGCGGCCGCGACCACTCCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGGCAACATCGTCGCCATACCCAACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCGTCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCCACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGCGGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTGTGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAGGTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTGAGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAGAAT]
[+] EMBL AK064340 [CGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCGCCGCCGCCGCCGCCGCCTTCGGCCACCGGCCACCGCCGCCTCCCGACCGGCCGCCATGGCGCGAAACGAGGAGAAGGCTCAGTCCATGCTGAACCGCTTCATCACGATGAAGCAGGAGGAGAAGCGGAAGCCACGGGAGCGGCGGCCGTACCTCGCCTCCGAGTGCCGCGACCTCGCCGACGCCGAGCGGTGGCGCTCCGAGATCCTCCGCGAGATCGGCGCCAAGGTCGCCGAGATCCAGAACGAGGGCCTCGGGGAGCACCGCCTCCGCGACCTCAACGACGAGATCAACAAGCTCCTCCGCGAGCGCGGCCACTGGGAGCGCCGCATCGTCGAGCTCGGCGGCCGCGACCACTCCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGGCAACATCGTCGCCATACCCAACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCGTCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCCACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGCGGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTGTGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAGGTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTGAGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAGAA ]
[+] EMBL CA767210 [ GACGA GACAAGGGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATGTTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAGAAT]
consensusID : consensus_5242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1117 fasta sequence
[TCTTCCCCACCCAACCCGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCGCCGCGACCACTCCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGACAACATCGTCGCCATACCCAACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCGTCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCCACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGCGGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTGTGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAGGTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTGAGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAG]
[+] EMBL AK073602 [TCTTCCCCACCCAACCCGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCGCCGCGACCACTCCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGACAACATCGTCGCCATACCCAACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCGTCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCCACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGCGGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTGTGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAGGTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTGAGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGAAGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGGAGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGGAAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAATCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCTGAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGCAAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAACCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTCTAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTAAAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTGCAAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5242#0 CGCAAATCCCCAAATCGAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAAC 60
consensus_5242#1 ------------------------------------------------------------
consensus_5242#0 CTCGCCGCCGCCGCCGCCGCCTTCGGCCACCGGCCACCGCCGCCTCCCGACCGGCCGCCA 120
consensus_5242#1 ------------------------------------------------------------
consensus_5242#0 TGGCGCGAAACGAGGAGAAGGCTCAGTCCATGCTGAACCGCTTCATCACGATGAAGCAGG 180
consensus_5242#1 ------------------------------------------------------------
consensus_5242#0 AGGAGAAGCGGAAGCCACGGGAGCGGCGGCCGTACCTCGCCTCCGAGTGCCGCGACCTCG 240
consensus_5242#1 ------------------------------------------------------------
consensus_5242#0 CCGACGCCGAGCGGTGGCGCTCCGAGATCCTCCGCGAGATCGGCGCCAAGGTCGCCGAGA 300
consensus_5242#1 ------------------------------------------------------------
consensus_5242#0 TCCAGAACGAGGGCCTCGGGGAGCACCGCCTCCGCGACCTCAACGACGAGATCAACAAGC 360
consensus_5242#1 ----------------------------TCTTCCCCACCCAACCCGCAAATCCCCAAATC 32
** * * *** * * * * * ** *
consensus_5242#0 TCCTCCGCGAGCGCGGCCACTGGGAGCGCCGCATCGTCGAGCTCGGCGGCCGCGACCACT 420
consensus_5242#1 GAACCCGCCGCCTCCCAAACCCTCGCTCTCCCAGCCCCAAGAACCTCG-CCGCGACCACT 91
**** * * ** * ** * * ** * ** ***********
consensus_5242#0 CCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGGCAACATCGTCGCCATACCCA 480
consensus_5242#1 CCCGCAGCTCCAACGCGCCCCTCATGACCGACCTCGACGACAACATCGTCGCCATACCCA 151
*************************************** ********************
consensus_5242#0 ACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCG 540
consensus_5242#1 ACCCCTCCGGCCGCGGCCCCGGGTACCGCTACTTCGGCGCCGCCAAGAAGCTCCCTGGCG 211
************************************************************
consensus_5242#0 TCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCC 600
consensus_5242#1 TCCGTGAGCTCTTCGACAAGCCACCCGAGGTCCGTAAGCGGCGGACCCGCTATGAGATCC 271
************************************************************
consensus_5242#0 ACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGC 660
consensus_5242#1 ACAAGCGCATCAACGCAGGGTACTACGGTTACTACGACGACGAAGACGGCATGCTAGAGC 331
************************************************************
consensus_5242#0 GGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTG 720
consensus_5242#1 GGCTCGAGGCCGTTGCCGAGAAGCGCATGCGCAATGAGGTCATCACTGAGTGGCACCGTG 391
************************************************************
consensus_5242#0 TGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAG 780
consensus_5242#1 TGGAGCGGGTGCGGCGGGAGGCCATGAAGGGGGTAGTGAGCGGCGAGGTGGCCTCGGCAG 451
************************************************************
consensus_5242#0 GTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTG 840
consensus_5242#1 GTGGGCGCGGCGGGGAGGCTGCTAGGGAGGTGCTGTTCGAGGAGGTGGAGGAGGAGGTTG 511
************************************************************
consensus_5242#0 AGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGA 900
consensus_5242#1 AGGAGGAGAGGAGGCTGGAGGAGGAGAAGAGGGAGAGAGAGAAGGGCGAGGAGGCTGGGA 571
************************************************************
consensus_5242#0 AGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGG 960
consensus_5242#1 AGGAGTTTATCGCGCATGTGCCGCTACCCGATGAGAAGGAGATTGAGCGGATGGTGTTGG 631
************************************************************
consensus_5242#0 AGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGG 1020
consensus_5242#1 AGCGGAAGAAGAAGGAGCTGCTGAGCAAGTACACCAGCGACGCCCTGCAGGTTGAGCAGG 691
************************************************************
consensus_5242#0 AAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAA 1080
consensus_5242#1 AAGAGGCCAAGGAGATGCTCAATGTGCGCCGCTAGGAGAGATGGTTGGCTATTGTTGGAA 751
************************************************************
consensus_5242#0 TCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCT 1140
consensus_5242#1 TCTTCATGATCTGAAACTTCAGCACTGAAGTACAACGAACACCCATGCGATGCTGACGCT 811
************************************************************
consensus_5242#0 GAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGC 1200
consensus_5242#1 GAAGCGCAGGAAAACAAGGAGGAGCCCGTTTTGCAGCGCATTCATGAACGCAGCCCTGGC 871
************************************************************
consensus_5242#0 AAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAA 1260
consensus_5242#1 AAACATCTGTTGTTAAAGAAAAAGCAGGGCTTCCCTGTGTTTTATCCATTTTATCACTAA 931
************************************************************
consensus_5242#0 CCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTC 1320
consensus_5242#1 CCTTGATGAGTGGTGAGTGATGGCGAAGCACTTACATATTCGTAATGTAAACCAGAGTTC 991
************************************************************
consensus_5242#0 TAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTA 1380
consensus_5242#1 TAGTGCACTGCATGCTTTTAGTGTACTCTCTAATTACTCTTTATAGCTGATTAGCTTCTA 1051
************************************************************
consensus_5242#0 AAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTG 1440
consensus_5242#1 AAATTTTAGTTGTATACTGGAGAATATGTACTTCGTCTGTTTTCCGGCTTCTATGATGTG 1111
************************************************************
consensus_5242#0 CAAGAGAAT 1449
consensus_5242#1 CAAGAG--- 1117
******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||