These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1972 fasta sequence [CGCCATGCTTCCGGTGCTTCCTCTTCCCTCTTCCTTGTTCCAAGATAGGAATCCAATAAGCTGTCCTGTTAGTTTTCAGTTTTTCATCCAAAAGGTGTAGATTAGGAGGTGAAAATGAAGGTGCAAGTAGAGGACTAGAGGTTCCTTCAGGTTTTCTACTTGCCTTGCGCTTGCAGATTTTGCAGAGAAGGATATCCTATCACCTTGCAAACATGGCGCAGGCTCTGAGTTTGGGGTTGCTTCTTGCGTTTCTGGCAATTCAATCCTGCATCGCCATTGAGCTGACTGATCACATCGACTTGTGGCCTATGCCAACGTCGGTGAGCCATGGAACACAAAGACTTATGTCAGCAAAGATATCACAATGTCAATGGAGGGAAGCACGTATCCTGACGGGAAAGGGATCTTGAAGGATGCCTTCCAGAGGGTAGTTGATTTAATGAAACTGAACCATGTCGTTGATGGTGCAAACCCAAGTTCTTTTGTACTCACTGGTGTAAATGTAGTTGTCCATTCACCTGAAGATGAGCTCAAATTCGGAGTAGATGAATCATATAACTTATCTGTTCCTACAGCAGGATATCCATTGCGCGTACAGATTGAGGCTCAAACAGTATTTGGAGCACTTCATGCTTTACAGACATTTAGCCAACTGTGTTACTTCGATTTCACATCAAAACTTATAGAACTCATCTCGGCTCCTTGGAGAATTTCTGACACACCAAGATTTCCTTACCGAGGACTTCTTATTGATACCTCAAGGCACTACCTTCCTGTTACGGTAATTAAAAAAGTGATTGATACAATGGCCTACAGTAAATTGAACGTTCTCCATTGGCATATTGTGGATGCACAGTCATTTCCCATTGAAATACCTTCATACCCTAAACTGTGGAACGGTTCATATTCTTTTTCAGAGAGATATACGACGTCTGATGCTGTAGACATTGTACGATATGCTGAAAATCGAGGTGTAAATGTTATGGCTGAGATTGATGTTCCTGGTCATGCTCTGTCATGGGGCGTTGGCTACCCATCATTGTGGCCATCAGATAGCTGCAAAGAACCACTTGATGTCAGTAACAACTTCACGTTTGGAGTTATTGATGGAATTCTTTCAGATTTTAGCAAAGTTTTTAAATTCAAATTTGTGCATTTAGGAGGTGATGAAGTCAACACAAGCTGCTGGACTGCAACACCCCACATTAAGAAATGGTTGGATGATAACCAAATGAATGTGTCAGATGCATACAGATATTTTGTGTTGAGATCCCAAAAGCTAGCAATATCACACGGTTATGATGTCATCAACTGGGAGGAAACATTTAACAATTTTGGAGACAAATTGGACCGTAGAACCGTGGTTCATAACTGGCTTGGAGAGGATGTAGCACCAAAAGTGGTTGCGGCAGGGCTGAGATGCATCGTAAGCAACCAGGATAAGTGGTACCTAGATCACTTAGATGCCACATGGGAGGGGTTTTACACGAATGAACCTCTGAAAGGTATTGACGACCCAGAGCAGCAAAGTTTGGTCATTGGTGGTGAGGTTTGTATGTGGGGCGAACAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAAACTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTATTTTTCCCCTCTTCCAATTTTCAACAGAATAATT] [+] EMBL AK070632 [CGCCATGCTTCCGGTGCTTCCTCTTCCCTCTTCCTTGTTCCAAGATAGGAATCCAATAAGCTGTCCTGTTAGTTTTCAGTTTTTCATCCAAAAGGTGTAGATTAGGAGGTGAAAATGAAGGTGCAAGTAGAGGACTAGAGGTTCCTTCAGGTTTTCTACTTGCCTTGCGCTTGCAGATTTTGCAGAGAAGGATATCCTATCACCTTGCAAACATGGCGCAGGCTCTGAGTTTGGGGTTGCTTCTTGCGTTTCTGGCAATTCAATCCTGCATCGCCATTGAGCTGACTGATCACATCGACTTGTGGCCTATGCCAACGTCGGTGAGCCATGGAACACAAAGACTTATGTCAGCAAAGATATCACAATGTCAATGGAGGGAAGCACGTATCCTGACGGGAAAGGGATCTTGAAGGATGCCTTCCAGAGGGTAGTTGATTTAATGAAACTGAACCATGTCGTTGATGGTGCAAACCCAAGTTCTTTTGTACTCACTGGTGTAAATGTAGTTGTCCATTCACCTGAAGATGAGCTCAAATTCGGAGTAGATGAATCATATAACTTATCTGTTCCTACAGCAGGATATCCATTGCGCGTACAGATTGAGGCTCAAACAGTATTTGGAGCACTTCATGCTTTACAGACATTTAGCCAACTGTGTTACTTCGATTTCACATCAAAACTTATAGAACTCATCTCGGCTCCTTGGAGAATTTCTGACACACCAAGATTTCCTTACCGAGGACTTCTTATTGATACCTCAAGGCACTACCTTCCTGTTACGGTAATTAAAAAAGTGATTGATACAATGGCCTACAGTAAATTGAACGTTCTCCATTGGCATATTGTGGATGCACAGTCATTTCCCATTGAAATACCTTCATACCCTAAACTGTGGAACGGTTCATATTCTTTTTCAGAGAGATATACGACGTCTGATGCTGTAGACATTGTACGATATGCTGAAAATCGAGGTGTAAATGTTATGGCTGAGATTGATGTTCCTGGTCATGCTCTGTCATGGGGCGTTGGCTACCCATCATTGTGGCCATCAGATAGCTGCAAAGAACCACTTGATGTCAGTAACAACTTCACGTTTGGAGTTATTGATGGAATTCTTTCAGATTTTAGCAAAGTTTTTAAATTCAAATTTGTGCATTTAGGAGGTGATGAAGTCAACACAAGCTGCTGGACTGCAACACCCCACATTAAGAAATGGTTGGATGATAACCAAATGAATGTGTCAGATGCATACAGATATTTTGTGTTGAGATCCCAAAAGCTAGCAATATCACACGGTTATGATGTCATCAACTGGGAGGAAACATTTAACAATTTTGGAGACAAATTGGACCGTAGAACCGTGGTTCATAACTGGCTTGGAGAGGATGTAGCACCAAAAGTGGTTGCGGCAGGGCTGAGATGCATCGTAAGCAACCAGGATAAGTGGTACCTAGATCACTTAGATGCCACATGGGAGGGGTTTTACACGAATGAACCTCTGAAAGGTATTGACGACCCAGAGCAGCAAAGTTTGGTCATTGGTGGTGAGGTTTGTATGTGGGGCGAACAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAAACTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTATTTTTCCCCTCTTCCAATTTTCAACAGAATAATT] consensusID : consensus_5249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 421 fasta sequence [AGAGGACGAGCCAAGGGGGTTTGTATGTGGGGCGGCCAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAACCTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTAAAAAAAAAAAAAAA] [-] EMBL CA759691 [AGAGGACGAGCCAAGGGGGTTTGTATGTGGGGCGGCCAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAACCTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTAAAAAAAAAAAAAAA] [-] EMBL CA759690 [AGAGGACGAGCCAAGGGGGTTTGTATGTGGGGCGGCCAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAACCTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5249#0 CGCCATGCTTCCGGTGCTTCCTCTTCCCTCTTCCTTGTTCCAAGATAGGAATCCAATAAG 60 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 CTGTCCTGTTAGTTTTCAGTTTTTCATCCAAAAGGTGTAGATTAGGAGGTGAAAATGAAG 120 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 GTGCAAGTAGAGGACTAGAGGTTCCTTCAGGTTTTCTACTTGCCTTGCGCTTGCAGATTT 180 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TGCAGAGAAGGATATCCTATCACCTTGCAAACATGGCGCAGGCTCTGAGTTTGGGGTTGC 240 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TTCTTGCGTTTCTGGCAATTCAATCCTGCATCGCCATTGAGCTGACTGATCACATCGACT 300 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TGTGGCCTATGCCAACGTCGGTGAGCCATGGAACACAAAGACTTATGTCAGCAAAGATAT 360 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 CACAATGTCAATGGAGGGAAGCACGTATCCTGACGGGAAAGGGATCTTGAAGGATGCCTT 420 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 CCAGAGGGTAGTTGATTTAATGAAACTGAACCATGTCGTTGATGGTGCAAACCCAAGTTC 480 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TTTTGTACTCACTGGTGTAAATGTAGTTGTCCATTCACCTGAAGATGAGCTCAAATTCGG 540 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 AGTAGATGAATCATATAACTTATCTGTTCCTACAGCAGGATATCCATTGCGCGTACAGAT 600 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TGAGGCTCAAACAGTATTTGGAGCACTTCATGCTTTACAGACATTTAGCCAACTGTGTTA 660 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 CTTCGATTTCACATCAAAACTTATAGAACTCATCTCGGCTCCTTGGAGAATTTCTGACAC 720 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 ACCAAGATTTCCTTACCGAGGACTTCTTATTGATACCTCAAGGCACTACCTTCCTGTTAC 780 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 GGTAATTAAAAAAGTGATTGATACAATGGCCTACAGTAAATTGAACGTTCTCCATTGGCA 840 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TATTGTGGATGCACAGTCATTTCCCATTGAAATACCTTCATACCCTAAACTGTGGAACGG 900 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TTCATATTCTTTTTCAGAGAGATATACGACGTCTGATGCTGTAGACATTGTACGATATGC 960 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TGAAAATCGAGGTGTAAATGTTATGGCTGAGATTGATGTTCCTGGTCATGCTCTGTCATG 1020 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 GGGCGTTGGCTACCCATCATTGTGGCCATCAGATAGCTGCAAAGAACCACTTGATGTCAG 1080 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TAACAACTTCACGTTTGGAGTTATTGATGGAATTCTTTCAGATTTTAGCAAAGTTTTTAA 1140 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 ATTCAAATTTGTGCATTTAGGAGGTGATGAAGTCAACACAAGCTGCTGGACTGCAACACC 1200 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 CCACATTAAGAAATGGTTGGATGATAACCAAATGAATGTGTCAGATGCATACAGATATTT 1260 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TGTGTTGAGATCCCAAAAGCTAGCAATATCACACGGTTATGATGTCATCAACTGGGAGGA 1320 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 AACATTTAACAATTTTGGAGACAAATTGGACCGTAGAACCGTGGTTCATAACTGGCTTGG 1380 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 AGAGGATGTAGCACCAAAAGTGGTTGCGGCAGGGCTGAGATGCATCGTAAGCAACCAGGA 1440 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 TAAGTGGTACCTAGATCACTTAGATGCCACATGGGAGGGGTTTTACACGAATGAACCTCT 1500 consensus_5249#1 ------------------------------------------------------------ consensus_5249#0 GAAAGGTATTGACGACCCAGAGCAGCAAAGTTTGGTCATTGGTGGTGAGGTTTGTATGTG 1560 consensus_5249#1 --------------------------AGAGGACGA-----GCCAAGGGGGTTTGTATGTG 29 * ** * * * ************ consensus_5249#0 GGGCGAACAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGC 1620 consensus_5249#1 GGGCGGCCAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGC 89 ***** ***************************************************** consensus_5249#0 TGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTC 1680 consensus_5249#1 TGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTC 149 ************************************************************ consensus_5249#0 AAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGC 1740 consensus_5249#1 AAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGC 209 ************************************************************ consensus_5249#0 TGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCA 1800 consensus_5249#1 TGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCA 269 ************************************************************ consensus_5249#0 TAGCAAGATGAAGGTAGTATGAACAGAGGATAAACTTTGTTCAGGATTCACTTTTACCAA 1860 consensus_5249#1 TAGCAAGATGAAGGTAGTATGAACAGAGGATAACCTTTGTTCAGGATTCACTTTTACCAA 329 ********************************* ************************** consensus_5249#0 GTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAA 1920 consensus_5249#1 GTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAA 389 ************************************************************ consensus_5249#0 GTTAACCTATTATCCCTATTTTTCCCCTCTTCCAATTTTCAACAGAATAATT 1972 consensus_5249#1 GTTAACCTATTATCCCTA---------------AAAAAAAAAAAAAA----- 421 ****************** ** ** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||