Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5256 cluster # 5256       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5256#0 length = 1781 sequences # 3  

consensusID : consensus_5256#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1781
fasta sequence
                              [GGCGGCCCATTCCTCCCGCACGACGCACGCGGCTCCGACCCCGTCCACTGGCTGGTCTGCACTCTCCCATCTCACGCCACCGCGCGACGCGACCAATTCCACGGCCTCCTCCCGGCTCCCACAAAAAGCGATGCCGCCTGCCGCCACCACGAAACGGAGCGCCACATAAGTCGTGTCCGTCCACTCACCCACGCCACCGCCACCGCCACGCATGGCCGCTCCGCCGTGCCCGCCGCGGCGGCCCATCTCCGCGCCGTGCTTCCTCCTCTGCTTCCTCCTCGGCTTCGTCGCGGGCCTCTTCCCCTTCGCCCACCGCCACCTCCACCTCGACCTCCACCTCCCGCTCCCTCCCCCTGCGACCGCCATCCTCGTCAGGGAGGACCCGCCGTCCGTCGTCGTCGACGTCGACACCCCGTTGCCGGCGGCGGCGGAGGAGCGGAAGCTGCTGCTGGTCGTGACGCCGACCCGCGCACGCCCGCTGCAGGCGTACTACCTGCGCCGGCTCGCGCACACGCTCCGCCTCGCGCCGTCCCCGCTGCTCTGGCTCGTCGTCGAGTCCGGCGCCGCCACGCGCGACACGGCCGCGCTCCTCCGCGGCTGCGGGGTCATGTACCGCCACCTCTCCTCCCCCGTCCCCGACGCGCCCCAGGATCGTCCCCGCCGCCGCGGACGGAGGCAGGACCGCCCGGCTGTTGACAGCCGCGCCCGCCAGCGGAACACGGCGCTGGATCACATCGAGCACCACCGCCTACACGGCATCGTCTACTTCGCCGACGAGGACAACGTCTACTCCCTTGACCTCTTCTACCATCTTCGCGACATTAGGAGTTTTGGAACCTGGCCTGTGGCAACCTTGCCCCCCGGGAAGAGTAAGACGATACTACAAGGACCAGTCTGTGAAGGTAGTCGTGTGGTGGGATGGCACACAACAGATAGGAGCAAGAATCAGAGGAGGTTCCATGTAGATATGTCTGGTTTTGCATTCAACAGCAGTAAGCTTTGGGACGCCAAGAACAGAGGTCATCAGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAAGAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCGTACC-TCCTGGTTGTTCAAAAATTATGAATTTTCATCTTCATCTGGAAGACAAGAATGCCATCTACCTGAACGGGTGGCAAACCACTCAAAACC-TGGATGTAATTATTCCTTT-GAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAGATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCAGGGCGCCACAGAAACTGAGGTGGTTCATATATACCAGAGTGCCATAGAAACTGAAGTGGTTCTTTTGGCTTGTCATCTTATCGAAAGTCAGATAGGATGGTTTGTGGATTAGGTGTACATACAACATAAACACATGAAGAAATCTGCGCTTACTTTTCACATCTAACATGTAAAGATGCTAATCCTGATGGCAATTTTGTTTATTCTAAATCCTTAGTGGCTGTTTGCCCCTTACCTCCATGGCTTGCTATTTTGTTTGCTGCAATTTTGCATTTTGTTTTTGTTTTTTCATGTGTCCTCGACAGTGCGGGGGTAAGTTTTCAGTCAGTCATAAGTTTACATCTGATCTCAACATTTTATAATCCTGTGCGCAAGAGTTTCGAGAGAAATTAACGACAGCAATTGTGGGTAGATGTCACTACTACTGAAAAAAAAAAAAAAAAA]

[+] EMBL AK107374             [GGCGGCCCATTCCTCCCGCACGACGCACGCGGCTCCGACCCCGTCCACTGGCTGGTCTGCACTCTCCCATCTCACGCCACCGCGCGACGCGACCAATTCCACGGCCTCCTCCCGGCTCCCACAAAAAGCGATGCCGCCTGCCGCCACCACGAAACGGAGCGCCACATAAGTCGTGTCCGTCCACTCACCCACGCCACCGCCACCGCCACGCATGGCCGCTCCGCCGTGCCCGCCGCGGCGGCCCATCTCCGCGCCGTGCTTCCTCCTCTGCTTCCTCCTCGGCTTCGTCGCGGGCCTCTTCCCCTTCGCCCACCGCCACCTCCACCTCGACCTCCACCTCCCGCTCCCTCCCCCTGCGACCGCCATCCTCGTCAGGGAGGACCCGCCGTCCGTCGTCGTCGACGTCGACACCCCGTTGCCGGCGGCGGCGGAGGAGCGGAAGCTGCTGCTGGTCGTGACGCCGACCCGCGCACGCCCGCTGCAGGCGTACTACCTGCGCCGGCTCGCGCACACGCTCCGCCTCGCGCCGTCCCCGCTGCTCTGGCTCGTCGTCGAGTCCGGCGCCGCCACGCGCGACACGGCCGCGCTCCTCCGCGGCTGCGGGGTCATGTACCGCCACCTCTCCTCCCCCGTCCCCGACGCGCCCCAGGATCGTCCCCGCCGCCGCGGACGGAGGCAGGACCGCCCGGCTGTTGACAGCCGCGCCCGCCAGCGGAACACGGCGCTGGATCACATCGAGCACCACCGCCTACACGGCATCGTCTACTTCGCCGACGAGGACAACGTCTACTCCCTTGACCTCTTCTACCATCTTCGCGACATTAGGAGTTTTGGAACCTGGCCTGTGGCAACCTTGCCCCCCGGGAAGAGTAAGACGATACTACAAGGACCAGTCTGTGAAGGTAGTCGTGTGGTGGGATGGCACACAACAGATAGGAGCAAGAATCAGAGGAGGTTCCATGTAGATATGTCTGGTTTTGCATTCAACAGCAGTAAGCTTTGGGACGCCAAGAACAGAGGTCATCAGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAAGAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCGTACC TCCTGGTTGTTCAAAAATTATGAATTTTCATCTTCATCTGGAAGACAAGAATGCCATCTACCTGAACGGGTGGCAAACCACTCAAAACC TGGATGTAATTATTCCTTT GAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAGATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCAGGGCGCCACAGAAACTGAGGTGGTTCATATATACCAGAGTGCCATAGAAACTGAAGTGGTTCTTTTGGCTTGTCATCTTATCGAAAGTCAGATAGGATGGTTTGTGGATTAGGTGTACATACAACATAAACACATGAAGAAATCTGCGCTTACTTTTCACATCTAACATGTAAAGATGCTAATCCTGATGGCAATTTTGTTTATTCTAAATCCTTAGTGGCTG                                                                                                                                                                                                                             ]
[+] EMBL CF308469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACGGAGGCGGGACCGCCCGGCTGTTGACAGCCGCGCCCGCCAGCGGAACACGGCGCTGGATCACATCGAGCACCACCGCCTACACGGCATCGTCTACTTCGCCGACGAGGACAACGTCTACTCCCTTGACCTCTTCTACCATCTTCGCGACATTAGGAGTTTTGGAACCTGGCCTGTGGCAACCTTGGCCCCCGGGAAGAGTAAGACGATACTACAAGGACCAGTCTGTGAAGGTAGTCGTGTGGTGGGATGGCACACAACAGATAGGAGCAAGAATCAGAGGAGGTTCCATGTAGATATGTCTGGTTTTGCATTCAACAGCAGTAAGCTTTGGGACGCCAAGAACAGAGGTCATCAGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAAGAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCGTACCNTCCTGGTTGTTCAAAAATTATGAATTTTCATCTTCATCTGGAAGACAAGAATGCCATCTACCTGAACGGGTGGCAAACCACTCAAAACCTTGGATGTAATTATTCCTTTGGAAGAA GAAGCAAGGCCCCTACTATAGCTCCTTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CF308470             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCCCCTACTATAGCTCCTTGCTTACCTTGCAGATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCAGGGCGCCACAGAAACTGAGGTGGTTCATATATACCAGAGTGCCATAGAAACTGAAGTGGTTCTTTTGGCTTGTCATCTTATCGAAAGTCAGATAGGATGGTTTGTGGATTAGGTGTACATACAACATAAACACATGAAGAAATTTGCGCTTACTTTTCACATTTAACATGTAAAGATGCTAATCCTGATGGCAATTTTGTTTATTTTAAATCCTTAGTGGCTGTTTGCCCCTTACCTCCATGGCTTGCTATTTTGTTTGCTGCAATTTTGCATTTTGTTTTTGTTTTTTCATGTGTCCTCGACAGTGCGGGGGTAAGTTTTCAGTCAGTCATAAGTTTACATCTGATCTCAACATTTTATAATCCTGTGCGCAAGAGTTTCGAGAGAAATTAACGACAGCAATTGTGGGTAGATGTCACTACTACTGAAAAAAAAAAAAAAAAA]


>consensus_5256#0 GGCGGCCCATTCCTCCCGCACGACGCACGCGGCTCCGACCCCGTCCACTGGCTGGTCTGC ACTCTCCCATCTCACGCCACCGCGCGACGCGACCAATTCCACGGCCTCCTCCCGGCTCCC ACAAAAAGCGATGCCGCCTGCCGCCACCACGAAACGGAGCGCCACATAAGTCGTGTCCGT CCACTCACCCACGCCACCGCCACCGCCACGCATGGCCGCTCCGCCGTGCCCGCCGCGGCG GCCCATCTCCGCGCCGTGCTTCCTCCTCTGCTTCCTCCTCGGCTTCGTCGCGGGCCTCTT CCCCTTCGCCCACCGCCACCTCCACCTCGACCTCCACCTCCCGCTCCCTCCCCCTGCGAC CGCCATCCTCGTCAGGGAGGACCCGCCGTCCGTCGTCGTCGACGTCGACACCCCGTTGCC GGCGGCGGCGGAGGAGCGGAAGCTGCTGCTGGTCGTGACGCCGACCCGCGCACGCCCGCT GCAGGCGTACTACCTGCGCCGGCTCGCGCACACGCTCCGCCTCGCGCCGTCCCCGCTGCT CTGGCTCGTCGTCGAGTCCGGCGCCGCCACGCGCGACACGGCCGCGCTCCTCCGCGGCTG CGGGGTCATGTACCGCCACCTCTCCTCCCCCGTCCCCGACGCGCCCCAGGATCGTCCCCG CCGCCGCGGACGGAGGCAGGACCGCCCGGCTGTTGACAGCCGCGCCCGCCAGCGGAACAC GGCGCTGGATCACATCGAGCACCACCGCCTACACGGCATCGTCTACTTCGCCGACGAGGA CAACGTCTACTCCCTTGACCTCTTCTACCATCTTCGCGACATTAGGAGTTTTGGAACCTG GCCTGTGGCAACCTTGCCCCCCGGGAAGAGTAAGACGATACTACAAGGACCAGTCTGTGA AGGTAGTCGTGTGGTGGGATGGCACACAACAGATAGGAGCAAGAATCAGAGGAGGTTCCA TGTAGATATGTCTGGTTTTGCATTCAACAGCAGTAAGCTTTGGGACGCCAAGAACAGAGG TCATCAGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAAGAGAC GGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCGTACCTCCTGGTTG TTCAAAAATTATGAATTTTCATCTTCATCTGGAAGACAAGAATGCCATCTACCTGAACGG GTGGCAAACCACTCAAAACCTGGATGTAATTATTCCTTTGAAGAAGGAAGCAAGGCCCCT ACTATAGCTCCTTGCTTACCTTGCAGATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATG TATTTCAAGTCATACCAGGGCGCCACAGAAACTGAGGTGGTTCATATATACCAGAGTGCC ATAGAAACTGAAGTGGTTCTTTTGGCTTGTCATCTTATCGAAAGTCAGATAGGATGGTTT GTGGATTAGGTGTACATACAACATAAACACATGAAGAAATCTGCGCTTACTTTTCACATC TAACATGTAAAGATGCTAATCCTGATGGCAATTTTGTTTATTCTAAATCCTTAGTGGCTG TTTGCCCCTTACCTCCATGGCTTGCTATTTTGTTTGCTGCAATTTTGCATTTTGTTTTTG TTTTTTCATGTGTCCTCGACAGTGCGGGGGTAAGTTTTCAGTCAGTCATAAGTTTACATC TGATCTCAACATTTTATAATCCTGTGCGCAAGAGTTTCGAGAGAAATTAACGACAGCAAT TGTGGGTAGATGTCACTACTACTGAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)