cluster # 5259

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Oryza sativa
cluster # 5259 cluster # 5259 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5259#0 length = 431 sequences # 2

consensus_5259#1 length = 165 sequences # 1

consensusID : consensus_5259#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 431
fasta sequence

                              [AGAGGACGAGACAAGGGGGGCCTTAAACTAATGAGTAAGGAAAACAAAGCGTTGCGGTGAGAGCCGCTCGCGGTGCGGGACTCAAACCCTGCACGGCAATTTTTGCGAGGGGAAGAGGCTCGCGCGGGTATTGACACTGCTTACTTTTGCAGGACTTGCCTGTGTGGGCCTCCCTACCCACAAAATACCAAATCTAAATTTAGCTATAGTTAATTAAATAGAACTCTTTTTAAAAAAATTCAAATTTGATTTGTAATAAATTATAGTAATATTTATAATAAAAACAAGTATTGTATTAAAATATGTTTAATATAAAATAAAAAAAAAAAAAAAACTTCGTTTAATGTGAGTATTTTAGCATTTTTTATATTCGTATTACATTTGTATTGATGTTAATGATTTAAAGAGTATTGATATAAAGATAAGTAAAA]

[-] EMBL CA760520             [AGAGGACGAGACAAGGGGGGCCTTAAACTAATGAGTAAGGAAAACAAAGCGTTGCGGTGAGAGCCGCTCGCGGTGCGGGACTCAAACCCTGCACGGCAATTTTTGCGAGGGGAAGAGGCTCGCGCGGGTATTGACACTGCTTACTTTTGCAGGACTTGCCTGTGTGGGCCTCCCTACCCACAAAATACCAAATCTAAATTTAGCTATAGTTAATTAAATAGAACTCTTTTTAAAAAAATTCAAATTTGATTTGTAATAAATTATAGTAATATTTATAATAAAAACAAGTATTGTATTAAAATATGTTTAATATAAAATAAAAAAAAAAAAAAA                                                                                                  ]
[+] EMBL AU091310             [                                                      CGGTGAGAGCCG TCGCGGTGCGGGACTCAAACCCTGCACGGCAATTTTTGCGAGGGGAAGAGGCTCGCGCGGGTATTGACACTGCTTACTTTTGCAGGACTTGCCTGTGTGGGCCTCCCTACCCACAAAATACCAAATCTAAATTTAGCTATAGTTAATTAAATAGAACTCTTTTTAAAAAAATTCAAATTTGATTTGTAATAAATTATAGTAATATTTATAATAAAAACAAATATTGTATTAAAATATGTTTAATATAAAATAAAATTAAATTGTAGACTTCGTTTAATGTGAGTATTTTAGCATTTTTTATATTCGTATTACATTTGTATTGATGTTAATGATTTAAAGAGTATTGATATAAAGATAAGTAAAA]




>consensus_5259#0
AGAGGACGAGACAAGGGGGGCCTTAAACTAATGAGTAAGGAAAACAAAGCGTTGCGGTGA
GAGCCGCTCGCGGTGCGGGACTCAAACCCTGCACGGCAATTTTTGCGAGGGGAAGAGGCT
CGCGCGGGTATTGACACTGCTTACTTTTGCAGGACTTGCCTGTGTGGGCCTCCCTACCCA
CAAAATACCAAATCTAAATTTAGCTATAGTTAATTAAATAGAACTCTTTTTAAAAAAATT
CAAATTTGATTTGTAATAAATTATAGTAATATTTATAATAAAAACAAGTATTGTATTAAA
ATATGTTTAATATAAAATAAAAAAAAAAAAAAAACTTCGTTTAATGTGAGTATTTTAGCA
TTTTTTATATTCGTATTACATTTGTATTGATGTTAATGATTTAAAGAGTATTGATATAAA
GATAAGTAAAA

consensusID : consensus_5259#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 165
fasta sequence

                              [AACGAGATTAGGCCGACTACTGGGAAAACAAAGGTTGGGGTGAGAGCGNTGGGGTGTGGGACTCAAACCCTGACGGCAATTTTTGCAGGGGAAGAGGTCGCGCGGGTATTGACACTGATTACTTTTGCAGGACTTGCTGTGTGGGCCTCCTAAAACTTATAATAA]

[-] EMBL D42616               [AACGAGATTAGGCCGACTACTGGGAAAACAAAGGTTGGGGTGAGAGCGNTGGGGTGTGGGACTCAAACCCTGACGGCAATTTTTGCAGGGGAAGAGGTCGCGCGGGTATTGACACTGATTACTTTTGCAGGACTTGCTGTGTGGGCCTCCTAAAACTTATAATAA]




>consensus_5259#1
AACGAGATTAGGCCGACTACTGGGAAAACAAAGGTTGGGGTGAGAGCGNTGGGGTGTGGG
ACTCAAACCCTGACGGCAATTTTTGCAGGGGAAGAGGTCGCGCGGGTATTGACACTGATT
ACTTTTGCAGGACTTGCTGTGTGGGCCTCCTAAAACTTATAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5259#0      AGAGGACGAGACAAGGGGGGCCTTAAACTAATGAGTAAGGAAAACAAAGCGTTGCGGTGA 60
consensus_5259#1      ---------------AACGAGATTAGGCCGACTACTG-GGAAAACAAAG-GTTGGGGTGA 43
                                        *   ***  *  *  * *  *********** **** *****

consensus_5259#0      GAGCCGCTCGCGGTGCGGGACTCAAACCCTGCACGGCAATTTTTGCGAGGGGAAGAGGCT 120
consensus_5259#1      GAGCGNT--GGGGTGTGGGACTCAAACCCTG-ACGGCAATTTTTGC-AGGGGAAGAGG-T 98
                      ****     * **** *************** ************** *********** *

consensus_5259#0      CGCGCGGGTATTGACACTGCTTACTTTTGCAGGACTTGCCTGTGTGGGCCTCCCTACCCA 180
consensus_5259#1      CGCGCGGGTATTGACACTGATTACTTTTGCAGGACTTGC-TGTGTGGGCCTCCTAAAACT 157
                      ******************* ******************* *************  *  * 

consensus_5259#0      CAAAATACCAAATCTAAATTTAGCTATAGTTAATTAAATAGAACTCTTTTTAAAAAAATT 240
consensus_5259#1      TATAATAA---------------------------------------------------- 165
                       * ****                                                     

consensus_5259#0      CAAATTTGATTTGTAATAAATTATAGTAATATTTATAATAAAAACAAGTATTGTATTAAA 300
consensus_5259#1      ------------------------------------------------------------
                                                                                  

consensus_5259#0      ATATGTTTAATATAAAATAAAAAAAAAAAAAAAACTTCGTTTAATGTGAGTATTTTAGCA 360
consensus_5259#1      ------------------------------------------------------------
                                                                                  

consensus_5259#0      TTTTTTATATTCGTATTACATTTGTATTGATGTTAATGATTTAAAGAGTATTGATATAAA 420
consensus_5259#1      ------------------------------------------------------------
                                                                                  

consensus_5259#0      GATAAGTAAAA 431
consensus_5259#1      -----------