These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1748 fasta sequence [CTATGAAAGAAAGCTCTAAAAAAAGGCCATGAGAGACCTTAAAGATTGACCTGAGATTTGCACAGGAAATTTGCAACAACAACAACACAACGAGATATATCACCTTGATATATATATCTGTTGCAATTGCAAGAAAAATTCTTTTCTCCCCTTGCAATTATTCTGTGCTCATCTCAATCAAGCTAGCATGCTGAGTAGTGGAGGGGAGTTGAAGAGCTCCTCCTTGGTGCAGCAGATGGTGTGGGTTGGCACGGGCAACAGCAGCAGCAGCAGCATCATGGGCAGCTTGAGGCAGCTGCCTTGTTCTGAGGAGCAAGATGCAGCTTCGTCTCCAGCCTCCATGCTCTTCCTCCCCCAGCAGCTGCTGCTTCATGCATCTTCTAATTCATCGCCATGTCTGAACATTCCTGAGGTGAATCTCAGCACTGGTCTTCATCCTCTTGGGAGCTTCCATGGCGATGTGCAGCAGCAGGAGATCATCAGCGGCATGCCAGATCAGTCATGGAGACAACTGCTTCTTGGTGGATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCTCCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCAGCGGCCTCGGCAGCAGCATGATGGATTTCTCCAACACCGCGGCGGTGGCGCCGGCGGCGGAGCCGGAGTTGACGAGGAAACACCATGCAGGCCAGTCAGATAACTCGTCGGAGTGTAACAGCACAGAGACAGGTTCAGCTCTTAAGAAGGCTAGGGTTCAAGCCTCTTCTTCAGCGCAATCTACCCTAAAGGTCAGGAAGGAGAGGCTTGGGGACAGAATAACAGCTCTTCACCAGATAGTTTCCCCATTTGGCAAGACTGACACTGCATCCGTACTGCAAGAGACCATTGGTTACATTAGATTCCTCCTGGGTCAAATTGAGGCTCTCAGCTACCCATACTTGGGGCAATGCTGCTCTGCGAACCCCATGCAACAGCAAACTGGAATAATGGCAGGAGAAAGGAGCACTGATGGCCTCTTCCCGGAGTTCCCAGCTGGCCAGGATGCAGAAAAGGATGGAAAGAAGCAACAGGCGAAGAAGGACGACGACCTGAGGAGCAGAGGGCTGTGCCTGGTCCCGGTCTCGTGCATGCCCCACCTGGCCGCCGACAACGACGTCGTCGTCGGCTCCGACTTCTGGGCCGCCGCCGGCGGCGGCGGCGGCGGCGGCGCGCCGCCCCTCGCCGGCATGAACCTGCGGTAGGCCGGCCGGGCCTACTGCTACACGTTCATCTTCGATCATATGCACAGACGACGACGACGACGCATCGGTGAAGTTTTGGCCAAATTAATGCATCCACGCACGTACTATTATTTTGGTTTTGTTTGGTTTCGTGTGATTTTAAACGATGATTATTTTCTCCTTATGGCGTTTATAGGGCTTAATTAATTAGCTGTCGATCGATTATCGAAATATACATACCATCAGGAGCAGTCAATCTGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTATATATATGCTCATAAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTC] [+] EMBL AK065732 [CTATGAAAGAAAGCTCTAAAAAAAGGCCATGAGAGACCTTAAAGATTGACCTGAGATTTGCACAGGAAATTTGCAACAACAACAACACAACGAGATATATCACCTTGATATATATATCTGTTGCAATTGCAAGAAAAATTCTTTTCTCCCCTTGCAATTATTCTGTGCTCATCTCAATCAAGCTAGCATGCTGAGTAGTGGAGGGGAGTTGAAGAGCTCCTCCTTGGTGCAGCAGATGGTGTGGGTTGGCACGGGCAACAGCAGCAGCAGCAGCATCATGGGCAGCTTGAGGCAGCTGCCTTGTTCTGAGGAGCAAGATGCAGCTTCGTCTCCAGCCTCCATGCTCTTCCTCCCCCAGCAGCTGCTGCTTCATGCATCTTCTAATTCATCGCCATGTCTGAACATTCCTGAGGTGAATCTCAGCACTGGTCTTCATCCTCTTGGGAGCTTCCATGGCGATGTGCAGCAGCAGGAGATCATCAGCGGCATGCCAGATCAGTCATGGAGACAACTGCTTCTTGGTGGATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCTCCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCAGCGGCCTCGGCAGCAGCATGATGGATTTCTCCAACACCGCGGCGGTGGCGCCGGCGGCGGAGCCGGAGTTGACGAGGAAACACCATGCAGGCCAGTCAGATAACTCGTCGGAGTGTAACAGCACAGAGACAGGTTCAGCTCTTAAGAAGGCTAGGGTTCAAGCCTCTTCTTCAGCGCAATCTACCCTAAAGGTCAGGAAGGAGAGGCTTGGGGACAGAATAACAGCTCTTCACCAGATAGTTTCCCCATTTGGCAAGACTGACACTGCATCCGTACTGCAAGAGACCATTGGTTACATTAGATTCCTCCTGGGTCAAATTGAGGCTCTCAGCTACCCATACTTGGGGCAATGCTGCTCTGCGAACCCCATGCAACAGCAAACTGGAATAATGGCAGGAGAAAGGAGCACTGATGGCCTCTTCCCGGAGTTCCCAGCTGGCCAGGATGCAGAAAAGGATGGAAAGAAGCAACAGGCGAAGAAGGACGACGACCTGAGGAGCAGAGGGCTGTGCCTGGTCCCGGTCTCGTGCATGCCCCACCTGGCCGCCGACAACGACGTCGTCGTCGGCTCCGACTTCTGGGCCGCCGCCGGCGGCGGCGGCGGCGGCGGCGCGCCGCCCCTCGCCGGCATGAACCTGCGGTAGGCCGGCCGGGCCTACTGCTACACGTTCATCTTCGATCATATGCACAGACGACGACGACGACGCATCGGTGAAGTTTTGGCCAAATTAATGCATCCACGCACGTACTATTATTTTGGTTTTGTTTGGTTTCGTGTGATTTTAAACGATGATTATTTTCTCCTTATGGCGTTTATAGGGCTTAATTAATTAGCTGTCGATCGATTATCGAAATATACATACCATCAGGAGCAGTCAATCTGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTATATATATGCTCATAAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTC] consensusID : consensus_5260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [CTGTGGTCTAGTCATGAAATTGTAGGTGCACTAGCTAATTTGATTGTTAAAGTAATTGTAGGTTAATTACTTCAGGCGAGGAAAGTAGTTAAAGCAGTTGTCTGCTGCTTTTATTCCGCTTTTGGGTGCTTTGCTAATCAGCAATTAATCACATGTACATCTCACACATGCATGGCACTATCTTGACACTTTGTTTCTTCCTGCATATGTGTGTATACATGTACTCCTACTTGCCTTGGGAAACTACAAATCATAAGCAGTGGTGGATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCTCCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCCGCGGACTCGGCAGCAGCATGATGGATTTCTCCACACCGCGGCGGTGGCGCCGGCGGCGGAACCGGAATTGACGAGGAAACACCATGGCAGGCAGGC] [+] EMBL CA755109 [CTGTGGTCTAGTCATGAAATTGTAGGTGCACTAGCTAATTTGATTGTTAAAGTAATTGTAGGTTAATTACTTCAGGCGAGGAAAGTAGTTAAAGCAGTTGTCTGCTGCTTTTATTCCGCTTTTGGGTGCTTTGCTAATCAGCAATTAATCACATGTACATCTCACACATGCATGGCACTATCTTGACACTTTGTTTCTTCCTGCATATGTGTGTATACATGTACTCCTACTTGCCTTGGGAAACTACAAATCATAAGCAGTGGTGGATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCTCCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCCGCGGACTCGGCAGCAGCATGATGGATTTCTCCACACCGCGGCGGTGGCGCCGGCGGCGGAACCGGAATTGACGAGGAAACACCATGGCAGGCAGGC] consensusID : consensus_5260#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [GGATNGCAGAAAGGATGGAAAGAAGCAACAGGCGAAGAAGGACGACGACCTGAGGAGCAGAGGTCTGTGCCTGGTCCCGGTCTCTGTGCATGCCCCACCTGGCCGCCGACAACGACTTCGTCGTCGGCTCCGACTTCTGGGCCGGCGGCGGCGGCGGCGCGCCGCCCCTCGCCGGCATGAACCTGCGGTAGGCCGGCCGGGCCTACTGCTACACGTTCATCTTCGATCATATGCACAGACGACGACGACGACGCATCGGTGGTGGAAGTTTTGGCCAAATTGAATGGCATCCACGCACGTACTATTATTTTGGGTGTTTGGTGTGTGGGTTTCGTGTGATTTTGAGAACGATGGATTGATTTTCTCCTTGATCGGCGTTTATAGGGCTTAATTGAATTAGCTGGTCGATGCGATTATCGAAATATGACATACCATNCAGGAGCAGTGCAATCTGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTGATGATGATGATGGCTCATAAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTCCTTGCTGTTCAAAAAAAAAA] [+] EMBL BQ906923 [GGATNGCAGAAAGGATGGAAAGAAGCAACAGGCGAAGAAGGACGACGACCTGAGGAGCAGAGGTCTGTGCCTGGTCCCGGTCTCTGTGCATGCCCCACCTGGCCGCCGACAACGACTTCGTCGTCGGCTCCGACTTCTGGGCCGGCGGCGGCGGCGGCGCGCCGCCCCTCGCCGGCATGAACCTGCGGTAGGCCGGCCGGGCCTACTGCTACACGTTCATCTTCGATCATATGCACAGACGACGACGACGACGCATCGGTGGTGGAAGTTTTGGCCAAATTGAATGGCATCCACGCACGTACTATTATTTTGGGTGTTTGGTGTGTGGGTTTCGTGTGATTTTGAGAACGATGGATTGATTTTCTCCTTGATCGGCGTTTATAGGGCTTAATTGAATTAGCTGGTCGATGCGATTATCGAAATATGACATACCATNCAGGAGCAGTGCAATCTGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTGATGATGATGATGGCTCATAAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTCCTTGCTGTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5260#0 CTATGAAAGAAAGCTCTAAAAAAAGGCCATGAGAGACCTTAAAGATTGACCTGAGATTTG 60 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 CACAGGAAATTTGCAACAACAACAACACAACGAGATATATCACCTTGATATATATATCTG 120 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 TTGCAATTGCAAGAAAAATTCTTTTCTCCCCTTGCAATTATTCTGTGCTCATCTCAATCA 180 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 AGCTAGCATGCTGAGTAGTGGAGGGGAGTTGAAGAGCTCCTCCTTGGTGCAGCAGATGGT 240 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 GTGGGTTGGCACGGGCAACAGCAGCAGCAGCAGCATCATGGGCAGCTTGAGGCAGCTGCC 300 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 TTGTTCTGAGGAGCAAGATGCAGCTTCGTCTCCAGCCTCCATGCTCTTCCTCCCCCAGCA 360 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 GCTGCTGCTTCATGCATCTTCTAATTCATCGCCATGTCTGAACATTCCTGAGGTGAATCT 420 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 CAGCACTGGTCTTCATCCTCTTGGGAGCTTCCATGGCGATGTGCAGCAGCAGGAGATCAT 480 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 CAGCGGCATGCCAGATCAGTCATGGAGACAACTGCTTCTTGGTGGATTAGTTGGAGATCA 540 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 CGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTAT 600 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 GCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGA 660 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 TGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCT 720 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 CCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCAGCGGCCTCGGCAGCAG 780 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 CATGATGGATTTCTCCAACACCGCGGCGGTGGCGCCGGCGGCGGAGCCGGAGTTGACGAG 840 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 GAAACACCATGCAGGCCAGTCAGATAACTCGTCGGAGTGTAACAGCACAGAGACAGGTTC 900 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 AGCTCTTAAGAAGGCTAGGGTTCAAGCCTCTTCTTCAGCGCAATCTACCCTAAAGGTCAG 960 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 GAAGGAGAGGCTTGGGGACAGAATAACAGCTCTTCACCAGATAGTTTCCCCATTTGGCAA 1020 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 GACTGACACTGCATCCGTACTGCAAGAGACCATTGGTTACATTAGATTCCTCCTGGGTCA 1080 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 AATTGAGGCTCTCAGCTACCCATACTTGGGGCAATGCTGCTCTGCGAACCCCATGCAACA 1140 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 ------------------------------------------------------------ consensus_5260#0 GCAAACTGGAATAATGGCAGGAGAAAGGAGCACTGATGGCCTCTTCCCGGAGTTCCCAGC 1200 consensus_5260#2 ------------------------------------------------------------ consensus_5260#1 --------------------------------------CTGTGGTCTAGTCATGAAATTG 22 consensus_5260#0 TGGCCAGGATGCAGAAAAGGATGG--AAAGAAGCAACAGGCGAAGAAGGAC-GACGACCT 1257 consensus_5260#2 ------GGATNGCAGAAAGGATGG--AAAGAAGCAACAGGCGAAGAAGGAC-GACGACCT 51 consensus_5260#1 TAGGTGCACTAGCTAATTTGATTGTTAAAGTAATTGTAGGTTAATTACTTCAGGCGAGGA 82 * * *** * **** * *** ** * * * *** consensus_5260#0 GAGGAGCAGAGGGCTGTGCCTGGTCCCGGT-CTC-GTGCATGCCCCACCTGGCCGCCGAC 1315 consensus_5260#2 GAGGAGCAGAGGTCTGTGCCTGGTCCCGGT-CTCTGTGCATGCCCCACCTGGCCGCCGAC 110 consensus_5260#1 AAGTAGTTAAAGCAGTTGTCTGCTGCTTTTATTCCGCTTTTGGGTGCTTTGCTAATCAGC 142 ** ** * * ** *** * * * ** * ** ** * * consensus_5260#0 AAC-GACGTCGTCGTCGGCTCCGACTTCTGGGCCGCCGCCGGCGGCGGCGGCGGCGGCGG 1374 consensus_5260#2 AAC-GACTTCGTCGTCGGCTCCGACTTCTGGGCCG------------GCGGCGGCGGCGG 157 consensus_5260#1 AATTAATCACATGTACATCTCACACATGCATGGCA-------------CTATCTTGACAC 189 ** * * * * *** ** * * * * * * consensus_5260#0 CGCGCCGCCCCTCGCCGGCATGAACCTGCG-GTAGGCCGGCCGGGCCTACTG--CTACAC 1431 consensus_5260#2 CGCGCCGCCCCTCGCCGGCATGAACCTGCG-GTAGGCCGGCCGGGCCTACTG--CTACAC 214 consensus_5260#1 TTTGTTTCTTCCTGCATATGTGTGTATACATGTACTCCTACTTGCCTTGGGAAACTACA- 248 * * * ** ** * * *** ** * * * * ***** consensus_5260#0 GTTCATCTTCGATCATATGCACAGACGACGACGACGACGCAT-CGGTG----AAGTTTTG 1486 consensus_5260#2 GTTCATCTTCGATCATATGCACAGACGACGACGACGACGCAT-CGGTGGTGGAAGTTTTG 273 consensus_5260#1 AATCATAAGCAGTGGTG-GATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTC 307 **** * * * * ** * ** **** ** * *** * * consensus_5260#0 GCCAAATTAAT--GCATCCACGCACGTACTATTATTTTGG---TTTTGTTTG---GTTTC 1538 consensus_5260#2 GCCAAATTGAATGGCATCCACGCACGTACTATTATTTTGGGTGTTTGGTGTGTGGGTTTC 333 consensus_5260#1 TCCTGTCCAAAGGGC-TAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCT-GCTGC 365 ** * ** * * * * *** * * * * * consensus_5260#0 GTGTGATTTTAA--ACGATGATT--ATTTTCTCCTTA--TGGCGTTTATAGGGCTTAATT 1592 consensus_5260#2 GTGTGATTTTGAGAACGATGGATTGATTTTCTCCTTGATCGGCGTTTATAGGGCTTAATT 393 consensus_5260#1 TTATGATTTCTATGGACATGG--CGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCG 423 * ****** * *** * ** * *** * consensus_5260#0 -AA-TTAGCTG-TCGAT-CGATTATCGAAATAT-ACATACCATC-AGGAGCAGT-CAATC 1645 consensus_5260#2 GAA-TTAGCTGGTCGATGCGATTATCGAAATATGACATACCATNCAGGAGCAGTGCAATC 452 consensus_5260#1 GAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAG-ATGCTCCTGCAGGCGGCGGCATCCTC 482 * *** * * * ** * * ** * ** * ** consensus_5260#0 TGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTATATATAT-----GCTCAT 1700 consensus_5260#2 TGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTGATGATGATGATGGCTCAT 512 consensus_5260#1 TCCTA-GGTCATGCGTCACCACCCGCGG-ACTCGGCAGCAGCATGATGG-ATTTCTCCAC 539 * * * * * * * * * * * ** *** ** ** consensus_5260#0 AAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTC------------ 1748 consensus_5260#2 AAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTCCTTGCTGTTCAA 572 consensus_5260#1 ACCGCGGCGGTGGCGCCGGCGGCGGAACCGGAATTGACGAGGAAACACCATGGCAGGCAG 599 * * * ** * * ** * * * * consensus_5260#0 -------- consensus_5260#2 AAAAAAAA 580 consensus_5260#1 GC------ 601 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||