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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1748 fasta sequence
[CTATGAAAGAAAGCTCTAAAAAAAGGCCATGAGAGACCTTAAAGATTGACCTGAGATTTGCACAGGAAATTTGCAACAACAACAACACAACGAGATATATCACCTTGATATATATATCTGTTGCAATTGCAAGAAAAATTCTTTTCTCCCCTTGCAATTATTCTGTGCTCATCTCAATCAAGCTAGCATGCTGAGTAGTGGAGGGGAGTTGAAGAGCTCCTCCTTGGTGCAGCAGATGGTGTGGGTTGGCACGGGCAACAGCAGCAGCAGCAGCATCATGGGCAGCTTGAGGCAGCTGCCTTGTTCTGAGGAGCAAGATGCAGCTTCGTCTCCAGCCTCCATGCTCTTCCTCCCCCAGCAGCTGCTGCTTCATGCATCTTCTAATTCATCGCCATGTCTGAACATTCCTGAGGTGAATCTCAGCACTGGTCTTCATCCTCTTGGGAGCTTCCATGGCGATGTGCAGCAGCAGGAGATCATCAGCGGCATGCCAGATCAGTCATGGAGACAACTGCTTCTTGGTGGATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCTCCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCAGCGGCCTCGGCAGCAGCATGATGGATTTCTCCAACACCGCGGCGGTGGCGCCGGCGGCGGAGCCGGAGTTGACGAGGAAACACCATGCAGGCCAGTCAGATAACTCGTCGGAGTGTAACAGCACAGAGACAGGTTCAGCTCTTAAGAAGGCTAGGGTTCAAGCCTCTTCTTCAGCGCAATCTACCCTAAAGGTCAGGAAGGAGAGGCTTGGGGACAGAATAACAGCTCTTCACCAGATAGTTTCCCCATTTGGCAAGACTGACACTGCATCCGTACTGCAAGAGACCATTGGTTACATTAGATTCCTCCTGGGTCAAATTGAGGCTCTCAGCTACCCATACTTGGGGCAATGCTGCTCTGCGAACCCCATGCAACAGCAAACTGGAATAATGGCAGGAGAAAGGAGCACTGATGGCCTCTTCCCGGAGTTCCCAGCTGGCCAGGATGCAGAAAAGGATGGAAAGAAGCAACAGGCGAAGAAGGACGACGACCTGAGGAGCAGAGGGCTGTGCCTGGTCCCGGTCTCGTGCATGCCCCACCTGGCCGCCGACAACGACGTCGTCGTCGGCTCCGACTTCTGGGCCGCCGCCGGCGGCGGCGGCGGCGGCGGCGCGCCGCCCCTCGCCGGCATGAACCTGCGGTAGGCCGGCCGGGCCTACTGCTACACGTTCATCTTCGATCATATGCACAGACGACGACGACGACGCATCGGTGAAGTTTTGGCCAAATTAATGCATCCACGCACGTACTATTATTTTGGTTTTGTTTGGTTTCGTGTGATTTTAAACGATGATTATTTTCTCCTTATGGCGTTTATAGGGCTTAATTAATTAGCTGTCGATCGATTATCGAAATATACATACCATCAGGAGCAGTCAATCTGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTATATATATGCTCATAAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTC]
[+] EMBL AK065732 [CTATGAAAGAAAGCTCTAAAAAAAGGCCATGAGAGACCTTAAAGATTGACCTGAGATTTGCACAGGAAATTTGCAACAACAACAACACAACGAGATATATCACCTTGATATATATATCTGTTGCAATTGCAAGAAAAATTCTTTTCTCCCCTTGCAATTATTCTGTGCTCATCTCAATCAAGCTAGCATGCTGAGTAGTGGAGGGGAGTTGAAGAGCTCCTCCTTGGTGCAGCAGATGGTGTGGGTTGGCACGGGCAACAGCAGCAGCAGCAGCATCATGGGCAGCTTGAGGCAGCTGCCTTGTTCTGAGGAGCAAGATGCAGCTTCGTCTCCAGCCTCCATGCTCTTCCTCCCCCAGCAGCTGCTGCTTCATGCATCTTCTAATTCATCGCCATGTCTGAACATTCCTGAGGTGAATCTCAGCACTGGTCTTCATCCTCTTGGGAGCTTCCATGGCGATGTGCAGCAGCAGGAGATCATCAGCGGCATGCCAGATCAGTCATGGAGACAACTGCTTCTTGGTGGATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCTCCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCAGCGGCCTCGGCAGCAGCATGATGGATTTCTCCAACACCGCGGCGGTGGCGCCGGCGGCGGAGCCGGAGTTGACGAGGAAACACCATGCAGGCCAGTCAGATAACTCGTCGGAGTGTAACAGCACAGAGACAGGTTCAGCTCTTAAGAAGGCTAGGGTTCAAGCCTCTTCTTCAGCGCAATCTACCCTAAAGGTCAGGAAGGAGAGGCTTGGGGACAGAATAACAGCTCTTCACCAGATAGTTTCCCCATTTGGCAAGACTGACACTGCATCCGTACTGCAAGAGACCATTGGTTACATTAGATTCCTCCTGGGTCAAATTGAGGCTCTCAGCTACCCATACTTGGGGCAATGCTGCTCTGCGAACCCCATGCAACAGCAAACTGGAATAATGGCAGGAGAAAGGAGCACTGATGGCCTCTTCCCGGAGTTCCCAGCTGGCCAGGATGCAGAAAAGGATGGAAAGAAGCAACAGGCGAAGAAGGACGACGACCTGAGGAGCAGAGGGCTGTGCCTGGTCCCGGTCTCGTGCATGCCCCACCTGGCCGCCGACAACGACGTCGTCGTCGGCTCCGACTTCTGGGCCGCCGCCGGCGGCGGCGGCGGCGGCGGCGCGCCGCCCCTCGCCGGCATGAACCTGCGGTAGGCCGGCCGGGCCTACTGCTACACGTTCATCTTCGATCATATGCACAGACGACGACGACGACGCATCGGTGAAGTTTTGGCCAAATTAATGCATCCACGCACGTACTATTATTTTGGTTTTGTTTGGTTTCGTGTGATTTTAAACGATGATTATTTTCTCCTTATGGCGTTTATAGGGCTTAATTAATTAGCTGTCGATCGATTATCGAAATATACATACCATCAGGAGCAGTCAATCTGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTATATATATGCTCATAAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTC]
consensusID : consensus_5260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[CTGTGGTCTAGTCATGAAATTGTAGGTGCACTAGCTAATTTGATTGTTAAAGTAATTGTAGGTTAATTACTTCAGGCGAGGAAAGTAGTTAAAGCAGTTGTCTGCTGCTTTTATTCCGCTTTTGGGTGCTTTGCTAATCAGCAATTAATCACATGTACATCTCACACATGCATGGCACTATCTTGACACTTTGTTTCTTCCTGCATATGTGTGTATACATGTACTCCTACTTGCCTTGGGAAACTACAAATCATAAGCAGTGGTGGATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCTCCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCCGCGGACTCGGCAGCAGCATGATGGATTTCTCCACACCGCGGCGGTGGCGCCGGCGGCGGAACCGGAATTGACGAGGAAACACCATGGCAGGCAGGC]
[+] EMBL CA755109 [CTGTGGTCTAGTCATGAAATTGTAGGTGCACTAGCTAATTTGATTGTTAAAGTAATTGTAGGTTAATTACTTCAGGCGAGGAAAGTAGTTAAAGCAGTTGTCTGCTGCTTTTATTCCGCTTTTGGGTGCTTTGCTAATCAGCAATTAATCACATGTACATCTCACACATGCATGGCACTATCTTGACACTTTGTTTCTTCCTGCATATGTGTGTATACATGTACTCCTACTTGCCTTGGGAAACTACAAATCATAAGCAGTGGTGGATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCTCCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCCGCGGACTCGGCAGCAGCATGATGGATTTCTCCACACCGCGGCGGTGGCGCCGGCGGCGGAACCGGAATTGACGAGGAAACACCATGGCAGGCAGGC]
consensusID : consensus_5260#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[GGATNGCAGAAAGGATGGAAAGAAGCAACAGGCGAAGAAGGACGACGACCTGAGGAGCAGAGGTCTGTGCCTGGTCCCGGTCTCTGTGCATGCCCCACCTGGCCGCCGACAACGACTTCGTCGTCGGCTCCGACTTCTGGGCCGGCGGCGGCGGCGGCGCGCCGCCCCTCGCCGGCATGAACCTGCGGTAGGCCGGCCGGGCCTACTGCTACACGTTCATCTTCGATCATATGCACAGACGACGACGACGACGCATCGGTGGTGGAAGTTTTGGCCAAATTGAATGGCATCCACGCACGTACTATTATTTTGGGTGTTTGGTGTGTGGGTTTCGTGTGATTTTGAGAACGATGGATTGATTTTCTCCTTGATCGGCGTTTATAGGGCTTAATTGAATTAGCTGGTCGATGCGATTATCGAAATATGACATACCATNCAGGAGCAGTGCAATCTGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTGATGATGATGATGGCTCATAAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTCCTTGCTGTTCAAAAAAAAAA]
[+] EMBL BQ906923 [GGATNGCAGAAAGGATGGAAAGAAGCAACAGGCGAAGAAGGACGACGACCTGAGGAGCAGAGGTCTGTGCCTGGTCCCGGTCTCTGTGCATGCCCCACCTGGCCGCCGACAACGACTTCGTCGTCGGCTCCGACTTCTGGGCCGGCGGCGGCGGCGGCGCGCCGCCCCTCGCCGGCATGAACCTGCGGTAGGCCGGCCGGGCCTACTGCTACACGTTCATCTTCGATCATATGCACAGACGACGACGACGACGCATCGGTGGTGGAAGTTTTGGCCAAATTGAATGGCATCCACGCACGTACTATTATTTTGGGTGTTTGGTGTGTGGGTTTCGTGTGATTTTGAGAACGATGGATTGATTTTCTCCTTGATCGGCGTTTATAGGGCTTAATTGAATTAGCTGGTCGATGCGATTATCGAAATATGACATACCATNCAGGAGCAGTGCAATCTGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTGATGATGATGATGGCTCATAAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTCCTTGCTGTTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5260#0 CTATGAAAGAAAGCTCTAAAAAAAGGCCATGAGAGACCTTAAAGATTGACCTGAGATTTG 60
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 CACAGGAAATTTGCAACAACAACAACACAACGAGATATATCACCTTGATATATATATCTG 120
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 TTGCAATTGCAAGAAAAATTCTTTTCTCCCCTTGCAATTATTCTGTGCTCATCTCAATCA 180
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 AGCTAGCATGCTGAGTAGTGGAGGGGAGTTGAAGAGCTCCTCCTTGGTGCAGCAGATGGT 240
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 GTGGGTTGGCACGGGCAACAGCAGCAGCAGCAGCATCATGGGCAGCTTGAGGCAGCTGCC 300
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 TTGTTCTGAGGAGCAAGATGCAGCTTCGTCTCCAGCCTCCATGCTCTTCCTCCCCCAGCA 360
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 GCTGCTGCTTCATGCATCTTCTAATTCATCGCCATGTCTGAACATTCCTGAGGTGAATCT 420
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 CAGCACTGGTCTTCATCCTCTTGGGAGCTTCCATGGCGATGTGCAGCAGCAGGAGATCAT 480
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 CAGCGGCATGCCAGATCAGTCATGGAGACAACTGCTTCTTGGTGGATTAGTTGGAGATCA 540
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 CGAGAAATACAGTGTGGCCACAGCTCTCCTGTCCAAAGGGCTAGATGATGAGGCCTCTAT 600
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 GCCTCACGAGGCATCAGCTGCTGCTTATGATTTCTATGGACATGGCGGCGGCGCCGGCGA 660
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 TGGGATCCTGCAGGCATCGCCGGAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAGATGCT 720
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 CCTGCAGGCGGCGGCATCCTCTCCTAGGTCATGCGTCACCACCAGCGGCCTCGGCAGCAG 780
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 CATGATGGATTTCTCCAACACCGCGGCGGTGGCGCCGGCGGCGGAGCCGGAGTTGACGAG 840
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 GAAACACCATGCAGGCCAGTCAGATAACTCGTCGGAGTGTAACAGCACAGAGACAGGTTC 900
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 AGCTCTTAAGAAGGCTAGGGTTCAAGCCTCTTCTTCAGCGCAATCTACCCTAAAGGTCAG 960
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 GAAGGAGAGGCTTGGGGACAGAATAACAGCTCTTCACCAGATAGTTTCCCCATTTGGCAA 1020
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 GACTGACACTGCATCCGTACTGCAAGAGACCATTGGTTACATTAGATTCCTCCTGGGTCA 1080
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 AATTGAGGCTCTCAGCTACCCATACTTGGGGCAATGCTGCTCTGCGAACCCCATGCAACA 1140
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 ------------------------------------------------------------
consensus_5260#0 GCAAACTGGAATAATGGCAGGAGAAAGGAGCACTGATGGCCTCTTCCCGGAGTTCCCAGC 1200
consensus_5260#2 ------------------------------------------------------------
consensus_5260#1 --------------------------------------CTGTGGTCTAGTCATGAAATTG 22
consensus_5260#0 TGGCCAGGATGCAGAAAAGGATGG--AAAGAAGCAACAGGCGAAGAAGGAC-GACGACCT 1257
consensus_5260#2 ------GGATNGCAGAAAGGATGG--AAAGAAGCAACAGGCGAAGAAGGAC-GACGACCT 51
consensus_5260#1 TAGGTGCACTAGCTAATTTGATTGTTAAAGTAATTGTAGGTTAATTACTTCAGGCGAGGA 82
* * *** * **** * *** ** * * * ***
consensus_5260#0 GAGGAGCAGAGGGCTGTGCCTGGTCCCGGT-CTC-GTGCATGCCCCACCTGGCCGCCGAC 1315
consensus_5260#2 GAGGAGCAGAGGTCTGTGCCTGGTCCCGGT-CTCTGTGCATGCCCCACCTGGCCGCCGAC 110
consensus_5260#1 AAGTAGTTAAAGCAGTTGTCTGCTGCTTTTATTCCGCTTTTGGGTGCTTTGCTAATCAGC 142
** ** * * ** *** * * * ** * ** ** * *
consensus_5260#0 AAC-GACGTCGTCGTCGGCTCCGACTTCTGGGCCGCCGCCGGCGGCGGCGGCGGCGGCGG 1374
consensus_5260#2 AAC-GACTTCGTCGTCGGCTCCGACTTCTGGGCCG------------GCGGCGGCGGCGG 157
consensus_5260#1 AATTAATCACATGTACATCTCACACATGCATGGCA-------------CTATCTTGACAC 189
** * * * * *** ** * * * * * *
consensus_5260#0 CGCGCCGCCCCTCGCCGGCATGAACCTGCG-GTAGGCCGGCCGGGCCTACTG--CTACAC 1431
consensus_5260#2 CGCGCCGCCCCTCGCCGGCATGAACCTGCG-GTAGGCCGGCCGGGCCTACTG--CTACAC 214
consensus_5260#1 TTTGTTTCTTCCTGCATATGTGTGTATACATGTACTCCTACTTGCCTTGGGAAACTACA- 248
* * * ** ** * * *** ** * * * * *****
consensus_5260#0 GTTCATCTTCGATCATATGCACAGACGACGACGACGACGCAT-CGGTG----AAGTTTTG 1486
consensus_5260#2 GTTCATCTTCGATCATATGCACAGACGACGACGACGACGCAT-CGGTGGTGGAAGTTTTG 273
consensus_5260#1 AATCATAAGCAGTGGTG-GATTAGTTGGAGATCACGAGAAATACAGTGTGGCCACAGCTC 307
**** * * * * ** * ** **** ** * *** * *
consensus_5260#0 GCCAAATTAAT--GCATCCACGCACGTACTATTATTTTGG---TTTTGTTTG---GTTTC 1538
consensus_5260#2 GCCAAATTGAATGGCATCCACGCACGTACTATTATTTTGGGTGTTTGGTGTGTGGGTTTC 333
consensus_5260#1 TCCTGTCCAAAGGGC-TAGATGATGAGGCCTCTATGCCTCACGAGGCATCAGCT-GCTGC 365
** * ** * * * * *** * * * * *
consensus_5260#0 GTGTGATTTTAA--ACGATGATT--ATTTTCTCCTTA--TGGCGTTTATAGGGCTTAATT 1592
consensus_5260#2 GTGTGATTTTGAGAACGATGGATTGATTTTCTCCTTGATCGGCGTTTATAGGGCTTAATT 393
consensus_5260#1 TTATGATTTCTATGGACATGG--CGGCGGCGCCGGCGATGGGATCCTGCAGGCATCGCCG 423
* ****** * *** * ** * *** *
consensus_5260#0 -AA-TTAGCTG-TCGAT-CGATTATCGAAATAT-ACATACCATC-AGGAGCAGT-CAATC 1645
consensus_5260#2 GAA-TTAGCTGGTCGATGCGATTATCGAAATATGACATACCATNCAGGAGCAGTGCAATC 452
consensus_5260#1 GAGGCCAGCAGCTGCAAGTCGCAGCTGAGCCAG-ATGCTCCTGCAGGCGGCGGCATCCTC 482
* *** * * * ** * * ** * ** * **
consensus_5260#0 TGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTATATATAT-----GCTCAT 1700
consensus_5260#2 TGTCATGATTAAGGCTGATTGCTCTTGATGCTATGCAAAGTGATGATGATGATGGCTCAT 512
consensus_5260#1 TCCTA-GGTCATGCGTCACCACCCGCGG-ACTCGGCAGCAGCATGATGG-ATTTCTCCAC 539
* * * * * * * * * * * ** *** ** **
consensus_5260#0 AAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTC------------ 1748
consensus_5260#2 AAATATGTACTATTGCACACACTTTGCTACGTATATAATATACATTTCCTTGCTGTTCAA 572
consensus_5260#1 ACCGCGGCGGTGGCGCCGGCGGCGGAACCGGAATTGACGAGGAAACACCATGGCAGGCAG 599
* * * ** * * ** * * * *
consensus_5260#0 --------
consensus_5260#2 AAAAAAAA 580
consensus_5260#1 GC------ 601
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||