These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence [TACTCTCCTTTAACAACTGAGCAAAATGTTGGCGTATGTGTGCTGGGAGGTGGATGATTTATTTACACTCGCAAGAATTTTGGTGGGTTAGGCCAAAAGATTGACACTACACCTCTGACGGGCTAACCCAAACCCTCATCTTTAACGGCTTCGCGCATGGTTAGTGATCTGTGGTCACTGGTGAGTCCAGACACCTTTGACGGGTGGCCGGCCATCACAGGTGACACCCACCTCTGACGGGCAAGTTACTAGAAGGCCGTCAGAGGTGTTGGTCTCCGCTAGCCTAGGGCGAGTTGGGACCCGTCACAGGTGACTTATCTCTGACGGCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCGTAGGTATAAGCTGTCACAGGTGATCTACCTGTGACGGNCCCAAAAGTAAAGGGCCATCACAGGTAGGTCAACTCTGACGGGGCTTTATTTGCTAATCCGTNACAGGTGAGGT] [+] EMBL OSS15394A [TACTCTCCTTTAACAACTGAGCAAAATGTTGGCGTATGTGTGCTGGGAGGTGGATGATTTATTTACACTCGCAAGAATTTTGGTGGGTTAGGCCAAAAGATTGACACTACACCTCTGACGGGCTAACCCAAACCCTCATCTTTAACGGCTTCGCGCATGGTTAGTGATCTGTGGTCACTGGTGAGTCCAGACACCTTTGACGGGTGGCCGGCCATCACAGGTGACACCCACCTCTGACGGGCAAGTTACTAGAAGGCCGTCAGAGGTGTTGGTCTCCGCTAGCCTAGGGCGAGTTGGGACCCGTCACAGGTGACTTATCTCTGACGGCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCGTAGGTATAAGCTGTCACAGGTGATCTACCTGTGACGGNCCCAAAAGTAAAGGGCCATCACAGGTAGGTCAACTCTGACGGGGCTTTATTTGCTAATCCGTNACAGGTGAGGT] [+] EMBL AU065946 [TACTCTCCTTTAACAACTGAGCAAAATGTTGGCGTATGTGTGCTGGGAGGTGGATGATTTATTTACACTCGCAAGAATTTTGGTGGGTTAGGCCAAAAGATTGACACTACACCTCTGACGGGCTAACCCAAACCCTCATCTTTAACGGCTTCGCGCATGGTTAGTGATCTGTGGTCACTGGTGAGTCCAGACACCTTTGACGGGTGGCCGGCCATCACAGGTGACACCCACCTCTGACGGGCAAGTTACTAGAAGGCCGTCAGAGGTGTTGGTCTCCGCTAGCCTAGGGCGAGTTGGGACCCGTCACAGGTGACTTATCTCTGACGGCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCNTAGATATAAGCTGTCACAGG ] consensusID : consensus_5261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CCGGGGCAAANGTTTAACTTAGAAAGGCCCGTCCAAGAAGGTCGNTTCCGGTACTACCCAGCATNAAGCCCTTAAGGTGCCGAAGTTCGGGAACCCGTTCANCAGGTTGAACTCTATCCTNCTTGACATGCCCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCGTAGATATAAGCTGTCACAGGTGATCTACCTGTGACGGCCCCAAAAGTAAAGGCCCATCACAGGTAGCNCTCACCNCTNGACGGGCCTTTATTTGCTAATCCGTCACAGGTGAGGTTACCTTTGACGGATTTTTGTTTCGACCCGTCACTGATGAGTTAATTCCAGAAAAAAAAATGCTAAATATTGGTTAGCCTCAGGATTTGCTAGCCATGCCCTCTGAAAAAAAA] [+] EMBL AU089785 [CCGGGGCAAANGTTTAACTTAGAAAGGCCCGTCCAAGAAGGTCGNTTCCGGTACTACCCAGCATNAAGCCCTTAAGGTGCCGAAGTTCGGGAACCCGTTCANCAGGTTGAACTCTATCCTNCTTGACATGCCCCTTTAAATAAAGGCCGTTAGAGGTGATGGTCTCCGTAGATATAAGCTGTCACAGGTGATCTACCTGTGACGGCCCCAAAAGTAAAGGCCCATCACAGGTAGCNCTCACCNCTNGACGGGCCTTTATTTGCTAATCCGTCACAGGTGAGGTTACCTTTGACGGATTTTTGTTTCGACCCGTCACTGATGAGTTAATTCCAGAAAAAAAAATGCTAAATATTGGTTAGCCTCAGGATTTGCTAGCCATGCCCTCTGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5261#0 TACTCTCCTTTAACAACTGAGCAAAATGTTGGCGTATGTGTGCTGGG--AGGTGGATGAT 58 consensus_5261#1 ---------------CCGGGGCAAANGTTTAACTTAGAAAGGCCCGTCCAAGAAGGTCGN 45 * * ***** ** * ** ** * * * * * consensus_5261#0 TTATTTACACTCGCAAGAATTTTGGTGGGTTAGGCCAAAAGATTGACACTACACCTCTGA 118 consensus_5261#1 TT-CCGGTACTACCCAGCATNAAGCCCTTAAGGTGCCGAAGTTCGGGA--ACCCGTTCAN 102 ** *** * ** ** * * * *** * * * ** * * consensus_5261#0 CGGGCTAACCCAAACCCTCATCTTTAACGGCTTCGCGCATGGTTAGTGATCTGTGGTCAC 178 consensus_5261#1 CAGGTTGAACT---CTATCCTNCTTGACA--TGCCCCTTTAAATAAAGGCC----GTTAG 153 * ** * * * * ** * ** ** * * * * ** * * ** * consensus_5261#0 TGGTGAGTCCAGACACCTTTGACGGGTGGCCGGCCATCACAGGTGACACCCACCTCTGAC 238 consensus_5261#1 AGGTGA---TGGTCTCCGTAGATA-----TAAGCTGTCACAGGTGAT--CTACCTGTGAC 203 ***** * * ** * ** ** ********** * **** **** consensus_5261#0 GGGCAAGTTACTAGAAGGCCGTCAGAGGTGTTGGTCTCCGCTAGCCTAGGGCGAGTTGG- 297 consensus_5261#1 GGCCCCAAAAGTAAAGGCCCATCACAGGTAGCNCTCACCNCTNGACGGGCCTTTATTTGC 263 ** * * ** * * ** *** **** ** ** ** * * * ** * consensus_5261#0 -GACCCGTCACAGGTGAC-TTATCTCTGACGGCCTTTAAATAAAGGCCGTTAGAGGTGAT 355 consensus_5261#1 TAATCCGTCACAGGTGAGGTTACCTTTGACGGATTTTTGTTTCGACCCGTCACTGATGAG 323 * ************* *** ** ****** *** * **** * * *** consensus_5261#0 GGTCTCCGTAGGTATAAGCTGTCACAGGTGATCTACCTGTGACGGNCCCAAAAGTAAAGG 415 consensus_5261#1 TTAATTCCAGAAAAAAAAATGCTAAATATTGGTTAGCCTCA--GGATTTGCTAGCCATGC 381 * * * ** ** * * * ** * ** ** * * consensus_5261#0 GCCATCACAGGTAGGTCAACTCTGACGGGGCTTTATTTGCTAATCCGTNACAGGTGAGGT 475 consensus_5261#1 CCTCTGAAAAAAAA---------------------------------------------- 395 * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||