cluster # 5263

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Oryza sativa
cluster # 5263 cluster # 5263 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5263#0 length = 586 sequences # 1

consensus_5263#1 length = 568 sequences # 2

consensusID : consensus_5263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [TGGTTCTGGTCCTCGACGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGTCCATGGACACGAACTCGGACTCCAAAGAATGGCGACGCCGCATCTTAAGTAGCGCTGCTTCGCGGGACGAACGGCGCTGTGGCGCTCCGGATCGTTCGCCGGAACCCGACACGTATACCGAGAGAGAGATGCTCACTCCGAAAACACTTGAAAATACGGAAACGGTGACGGCGCTCGGGCACGCGATCGTGACGGTATCGAGACAAACAGGCATACGAGACCGGTTCAGGGTATGAATAGGGATGAGCTATAGGTCGAGCGATGACTGTGAATCACGGCTATCGCCCCTGTTGCTCTCGAGAACGGAGGTAAGGACACCGCCAGCGATGACGAGGATGAAGCTTGAGTGGCGGTCGCTACTTCCACCGTGTGCACCGGGTACGCTACTGCCACGGATTTAACAGGGTACCGATGAGAACGGTCCACGATAGCGATCTGCGTCTCCATCCTACGTGGAGACTAGGAGGTGGCTATCCAACCATTCGACGAATCTCCATCGGACTGGAGGAACTGAGGAAGGCGACCACTA]

[+] EMBL CA755361             [TGGTTCTGGTCCTCGACGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGTCCATGGACACGAACTCGGACTCCAAAGAATGGCGACGCCGCATCTTAAGTAGCGCTGCTTCGCGGGACGAACGGCGCTGTGGCGCTCCGGATCGTTCGCCGGAACCCGACACGTATACCGAGAGAGAGATGCTCACTCCGAAAACACTTGAAAATACGGAAACGGTGACGGCGCTCGGGCACGCGATCGTGACGGTATCGAGACAAACAGGCATACGAGACCGGTTCAGGGTATGAATAGGGATGAGCTATAGGTCGAGCGATGACTGTGAATCACGGCTATCGCCCCTGTTGCTCTCGAGAACGGAGGTAAGGACACCGCCAGCGATGACGAGGATGAAGCTTGAGTGGCGGTCGCTACTTCCACCGTGTGCACCGGGTACGCTACTGCCACGGATTTAACAGGGTACCGATGAGAACGGTCCACGATAGCGATCTGCGTCTCCATCCTACGTGGAGACTAGGAGGTGGCTATCCAACCATTCGACGAATCTCCATCGGACTGGAGGAACTGAGGAAGGCGACCACTA]




>consensus_5263#0
TGGTTCTGGTCCTCGACGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGTCCA
TGGACACGAACTCGGACTCCAAAGAATGGCGACGCCGCATCTTAAGTAGCGCTGCTTCGC
GGGACGAACGGCGCTGTGGCGCTCCGGATCGTTCGCCGGAACCCGACACGTATACCGAGA
GAGAGATGCTCACTCCGAAAACACTTGAAAATACGGAAACGGTGACGGCGCTCGGGCACG
CGATCGTGACGGTATCGAGACAAACAGGCATACGAGACCGGTTCAGGGTATGAATAGGGA
TGAGCTATAGGTCGAGCGATGACTGTGAATCACGGCTATCGCCCCTGTTGCTCTCGAGAA
CGGAGGTAAGGACACCGCCAGCGATGACGAGGATGAAGCTTGAGTGGCGGTCGCTACTTC
CACCGTGTGCACCGGGTACGCTACTGCCACGGATTTAACAGGGTACCGATGAGAACGGTC
CACGATAGCGATCTGCGTCTCCATCCTACGTGGAGACTAGGAGGTGGCTATCCAACCATT
CGACGAATCTCCATCGGACTGGAGGAACTGAGGAAGGCGACCACTA

consensusID : consensus_5263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 568
fasta sequence

                              [ACCAAGCTCGTGGCTCTGGGCCTCGCCGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGGCCAGGTACACGAACTCGTACTCCGGCGGCGGGGG-AGGCGGCGGCGGAGGAGGCGGCGGCGGCGGGACGAACGGCGGGTGGGGCTCCGGCTCGGGCGCCGGCGCCGGCGCCGGATACGGCGAGAGCGGNGGCGACTCCGGCAACACGTGGAACTACGGGAGGCGTGGCGGCGCTGGCGGAGGAGGCGGCGTCGTCGTCGCGACCTACGGCGGGTACGGTTCCGGGTCCGGCTCCGGATACCGCATGGTCAGAGGGCTCCAGCGCCGGCTCCGGCTCGTCTGTGCCGATCCCGCGTGCTCTCAACAGCGGCGGTTATTACACCACCGGCGCTTGCCCAGGTGGACCACGGCGCCGATTGCCGCCGCTTCACTCACGCGCTCACCGCACCACCGCCGCTGGCCGCTCCAGTTGGACTCAACTTACCGCCGACAGCGTCATCAGCTATATCCATCGGCACCCGGCTCCGTCCAGTGATCTCGCGCCTACACGCGCGCCACCTCGA]

[+] EMBL AU173296             [ACCAAGCTCGTGGCTCTGGGCCTCGCCGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGGCCAGGTACACGAACTCGTACTCCGGCGGCGGGGG AGGCGGCGGCGGAGGAGGCGGCGGCGGCGGGACGAACGGCGGGTGGGGCTCCGGCTCGGGCGCCGGCGCCGGCGCCGGATACGGCGAGAGCGGNGGCGACTCCGGCAACACGTGGAACTACGG                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA755187             [          TGGCTCTGGGCCTCGCCGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCGAGGGTGGCCAGGTACACGAACTCGTACTCCGGCGGCGGGGGCAGGCGGCGGCGGAGGAGGCGGCGGCGGCGGGACGAACGGCGGGTGGGGCTCCGGCTCGGGCGCCGGCGCCGAGGCCGGATACGGTGAGAGCGGCGGCGACTCCGGCAACACGTGGAACTACGGGAGGCGTGGCGGCGCTGGCGGAGGAGGCGGCGTCGTCGTCGCGACCTACGGCGGGTACGGTTCCGGGTCCGGCTCCGGATACCGCATGGTCAGAGGGCTCCAGCGCCGGCTCCGGCTCGTCTGTGCCGATCCCGCGTGCTCTCAACAGCGGCGGTTATTACACCACCGGCGCTTGCCCAGGTGGACCACGGCGCCGATTGCCGCCGCTTCACTCACGCGCTCACCGCACCACCGCCGCTGGCCGCTCCAGTTGGACTCAACTTACCGCCGACAGCGTCATCAGCTATATCCATCGGCACCCGGCTCCGTCCAGTGATCTCGCGCCTACACGCGCGCCACCTCGA]




>consensus_5263#1
ACCAAGCTCGTGGCTCTGGGCCTCGCCGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCG
AGGGTGGCCAGGTACACGAACTCGTACTCCGGCGGCGGGGGAGGCGGCGGCGGAGGAGGC
GGCGGCGGCGGGACGAACGGCGGGTGGGGCTCCGGCTCGGGCGCCGGCGCCGGCGCCGGA
TACGGCGAGAGCGGNGGCGACTCCGGCAACACGTGGAACTACGGGAGGCGTGGCGGCGCT
GGCGGAGGAGGCGGCGTCGTCGTCGCGACCTACGGCGGGTACGGTTCCGGGTCCGGCTCC
GGATACCGCATGGTCAGAGGGCTCCAGCGCCGGCTCCGGCTCGTCTGTGCCGATCCCGCG
TGCTCTCAACAGCGGCGGTTATTACACCACCGGCGCTTGCCCAGGTGGACCACGGCGCCG
ATTGCCGCCGCTTCACTCACGCGCTCACCGCACCACCGCCGCTGGCCGCTCCAGTTGGAC
TCAACTTACCGCCGACAGCGTCATCAGCTATATCCATCGGCACCCGGCTCCGTCCAGTGA
TCTCGCGCCTACACGCGCGCCACCTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5263#0      ----------TGGTTCTGGTCCTCGACGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCG 50
consensus_5263#1      ACCAAGCTCGTGGCTCTGGGCCTCGCCGTCCTCCTCAGCATCGGGTTCGCTGGTGCCGCG 60
                                *** ***** ***** **********************************

consensus_5263#0      AGGGTGTCCATGGACACGAACTCGGACTCCAAAGAATGGCGACGCCGCATCTTAAGTAGC 110
consensus_5263#1      AGGGTGGCCAGGTACACGAACTCGTACTCCGGCGGCGGGGGAGGCGGCGGCGGAGGAGGC 120
                      ****** *** * *********** *****   *   ** ** ** **  *  * *  **

consensus_5263#0      GCTGCTTCGCGGGACGAACGGCGCTGTGGCGCTCCGGATCGTTCGCCGGAACCCGACACG 170
consensus_5263#1      GGCGGCG-GCGGGACGAACGGCGG-GTGGGGCTCCGGCTCGGGCGCCGGCGCCGGCGCCG 178
                      *  *    ***************  **** ******* ***  ******  ** *   **

consensus_5263#0      TATACCGAGAGAGAGATGCTCACTCCGAAAACACTTGAAAATACGGAAACGGTGACGGCG 230
consensus_5263#1      GATACGGCGAGAGCGGNGGCGACTCCGGCAACACGTGGAACTACGGGAGGCGTGGCGGCG 238
                       **** * ***** *  *   ******  ***** ** ** ***** *   *** *****

consensus_5263#0      CTCGGGCACGCGATCGTGACGGTATCGAGACAAACAG-GCATACGAGACCGGTTCAGGGT 289
consensus_5263#1      CTGGCGGAGGAGGCGGCGTCGTCGTCGCGACCTACGGCGGGTACGGTTCCGGGTCCGGCT 298
                      ** * * * * *   * * **   *** ***  ** * *  ****   **** ** ** *

consensus_5263#0      ATGAATAGGGATGAGCTATAGG--TCGAGCGATGACTGTGAATCACGGCTATCGCCCCTG 347
consensus_5263#1      CCGGATACCGCATGGTCAGAGGGCTCCAGCGCCGGCTCCGGCTCGTCTGTGCCGATCCCG 358
                        * ***  *    *  * ***  ** ****  * **  *  **     *  **  ** *

consensus_5263#0      T-TGCTCTCGAGAACGGAGGTAAGGACACCGCCAGCGATGACGAGGATGAAGCTTGAGTG 406
consensus_5263#1      CGTGCTCTCAACAGCGGCGGTTATTACACCACCGGCGCTTGCCCAGGTGGACCACG-GCG 417
                        ******* * * *** *** *  ***** ** *** *  *   * ** * *  * * *

consensus_5263#0      GCGGTCGCTACTTCCAC-CGTGTGCACCGGGTACGCTACTGCCACGGATTTAACAGGGTA 465
consensus_5263#1      CCGATTGCCGCCGCTTCACTCACGCGCTCACCGCACCACCGCCGCTGGCCGCTCCAGTTG 477
                       ** * **  *  *  * *    ** *      * * ** *** * *      *  * * 

consensus_5263#0      CCGATGAGAACGGTCCACGATAGCGATCTGCGTCTCCATCCTACGTGGAGACTAGGAGGT 525
consensus_5263#1      --GACTCAACTTACCGCCGACAGCG-TCATCAGCTATATCC---ATCGGCACCCGGCTCC 531
                        **    *     *  *** **** **  *  **  ****    * *  **  **    

consensus_5263#0      GGCTATCCAACCATTCGACGAATCTCCATCGGACTGGAGGAACTGAGGAAGGCGACCACT 585
consensus_5263#1      GTCCAGT-GATCTCGCGCCTACACGCGCGCCACCTCGA---------------------- 568
                      * * *    * *   ** * *  * *   *   ** **                      

consensus_5263#0      A 586
consensus_5263#1      -