These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1252 fasta sequence [CTCTCCGCCGCACGGCCGCCTCCGCCTCCGGCTTCCTCCGCCGCCGCCTCCTCTCCGAGCTCGCCGGGAACGGCGCGCCACTCCCGCGCGTCGGGGCCGTGTACGCCTTCGGGGACAACAGCCACGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTGTCAAGGTTCTAACTTTCTCCCTGAAATTAAGTAGTCGGATGTTTGCTCCCTTGTGAGAAAAAAGTTGTTAATTGAAGGAATGATGCTAGGTATCATTTGGTCGAGTTCATTCGGTTGCTCTCACATCAAAGGGAGAGGTTTGGGCATGGGGATCTGGCCGAAACGGCAGGCTAGGTTTGGGAAGCTCGATGGATGAGCCTGAGCCTTTCCTCATCGATACCCTGGAAGGAGCAGAGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGTTGCTGAGTAGGCTGGGGTTTTCTTCACCACCGAAAGTCCTTTGATTCTTGCCGTTGTCAGTGGAGAGGTTGTCATTGTCCATCTACTGGATACGATCTTTAAAACAAACAGGCGATGTTACTCGATATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAGCTAGTTTGACATCACATTCCCCTTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGTCAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGAAAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTATGTTCTATGCCAAAGCTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAAGTTTTGTGTGGTGAACAATATCCTCCGGCAAAATCTTGGTGAAATTTTC] [+] EMBL AK105298 [CTCTCCGCCGCACGGCCGCCTCCGCCTCCGGCTTCCTCCGCCGCCGCCTCCTCTCCGAGCTCGCCGGGAACGGCGCGCCACTCCCGCGCGTCGGGGCCGTGTACGCCTTCGGGGACAACAGCCACGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTGTCAAGGTTCTAACTTTCTCCCTGAAATTAAGTAGTCGGATGTTTGCTCCCTTGTGAGAAAAAAGTTGTTAATTGAAGGAATGATGCTAGGTATCATTTGGTCGAGTTCATTCGGTTGCTCTCACATCAAAGGGAGAGGTTTGGGCATGGGGATCTGGCCGAAACGGCAGGCTAGGTTTGGGAAGCTCGATGGATGAGCCTGAGCCTTTCCTCATCGATACCCTGGAAGGAGCAGAGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGTTGCTGAGTAGGCTGGGGTTTTCTTCACCACCGAAAGTCCTTTGATTCTTGCCGTTGTCAGTGGAGAGGTTGTCATTGTCCATCTACTGGATACGATCTTTAAAACAAACAGGCGATGTTACTCGATATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAGCTAGTTTGACATCACATTCCCCTTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGTCAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGAAAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTATGTTCTATGCCAAAGCTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAAGTTTTGTGTGGTGAACAATATCCTCCGGCAAAATCTTGGTGAAATTTTC] consensusID : consensus_5274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [CGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTGTCAAGGTATCATTTGGTTGGGGACATGCTATGGCATTGACAAAGGATGGAGGGTTACTTGGCTGGGGATATTCAGAAAACGGAAGGTTAGGAGAAATTGGCCATATTACTCAGGCTTCTTCTGCCAAAGAATTACTTGGAAAAACAGTTGACAAGTACTCTAGCTCAATGCTAGAGGCCGTTGAAAAGATGGTTGAGGAAAAAATAAGGAGTGAAGACAATATGCCCATCATCTGGGAACCTTCGCTTGTTCATGAAGTGTGTCATGTTGAGGTGTCTGATGTGTCATGTGGGCTCGATCATTCTCTGGTTCTCTGCTCTGATGGCATCGTACTGAGCGGTGGAGACAACACTTACGGACAGCTTGGCNA] [+] EMBL CB674689 [CGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTGTCAAGGTATCATTTGGTTGGGGACATGCTATGGCATTGACAAAGGATGGAGGGTTACTTGGCTGGGGATATTCAGAAAACGGAAGGTTAGGAGAAATTGGCCATATTACTCAGGCTTCTTCTGCCAAAGAATTACTTGGAAAAACAGTTGACAAGTACTCTAGCTCAATGCTAGAGGCCGTTGAAAAGATGGTTGAGGAAAAAATAAGGAGTGAAGACAATATGCCCATCATCTGGGAACCTTCGCTTGTTCATGAAGTGTGTCATGTTGAGGTGTCTGATGTGTCATGTGGGCTCGATCATTCTCTGGTTCTCTGCTCTGATGGCATCGTACTGAGCGGTGGAGACAACACTTACGGACAGCTTGGCNA] consensusID : consensus_5274#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [GACGAGACAAGGGGATGGAACTGCAGCTCCCAGCTTGGACGACCTGGCAAAGAAGACGTGCCTGCACTAGTCGACGGTCTGAATGGAGAGAGGCCAGTGTCGGCCTCGGCTGGTCGAGTTCATTCGGTTGCTCTCACATCAAAGGGAGAGGTTTGGGCATGGGGATCTGGCCGAAACGGCAGGCTAGGTTTGGGAAGCTCGATGGATGAGCCTGAGCCTTTCCTCATCGATACCCTGGAAGGAGCAGAGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGTTGCTGAGTAGGCCGGGGTTTTCTTCACCACCGAAAGTCCTTTGATTCTTGCCGTTGTCAGTGGAGAGGTTGTCATTGTCCATCTACTGGATACGATCTTTAAAACAAACAGGCGATGTTACTCGATATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAGCTAGTTTGACATCACATTCCCCCTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGTCAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGAAAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTATGTTCTATGCCAAAGCTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAAGNTTTGNGTGGTGAACAATATCCTCCAGTAGAATCTTGGTGAAATTTT] [+] EMBL CA767375 [GACGAGACAAGGGGATGGAACTGCAGCTCCCAGCTTGGACGACCTGGCAAAGAAGACGTGCCTGCACTAGTCGACGGTCTGAATGGAGAGAGGCCAGTGTCGGCCTCGGCTGGTCGAGTTCATTCGGTTGCTCTCACATCAAAGGGAGAGGTTTGGGCATGGGGATCTGGCCGAAACGGCAGGCTAGGTTTGGGAAGCTCGATGGATGAGCCTGAGCCTTTCCTCATCGATACCCTGGAAGGAGCAGAGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGTTGCTGAGTAGGCCGGGGTTTTCTTCACCACCGAAAGTCCTTTGATTCTTGCCGTTGTCAGTGGAGAGGTTGTCATTGTCCATCTACTGGATACGATCTTTAAAACAAACAGGCGATGTTACTCGATATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAGCTAGTTTGACATCACATTCCCCCTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGTCAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGAAAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTATGTTCTATGCCAAAGCTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAAGNTTTGNGTGGTGAACAATATCCTCCAGTAGAATCTTGGTGAAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5274#0 CTCTCCGCCGCACGGCCGCCTCCGCCTCCGGCTTCCTCCGCCGCCGCCTCCTCTCCGAGC 60 consensus_5274#2 ------------------------------------------------------------ consensus_5274#1 ------------------------------------------------------------ consensus_5274#0 TCGCCGGGAACGGCGCGCCACTCCCGCGCGTCGGGGCCGTGTACGCCTTCGGGGACAACA 120 consensus_5274#2 ------------------------------------------------------------ consensus_5274#1 ------------------------------------------------------------ consensus_5274#0 GCCACGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGC 180 consensus_5274#2 ------------------------------------------------------------ consensus_5274#1 ------------------------------------------------------------ consensus_5274#0 CCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTT 240 consensus_5274#2 ------------------------------------------------------------ consensus_5274#1 ------------------------------------------------------------ consensus_5274#0 CCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGC 300 consensus_5274#2 ------------------------------------------------------------ consensus_5274#1 ------------------------------------------------------------ consensus_5274#0 ACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTC 360 consensus_5274#2 ------------------------------------------------------------ consensus_5274#1 ------------------------------------------------------------ consensus_5274#0 AAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTT 420 consensus_5274#2 ------------------------------------------------------------ consensus_5274#1 ------------------------------------------------------------ consensus_5274#0 TATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGG 480 consensus_5274#2 ------------------------------------------------------------ consensus_5274#1 ------------------------------------------------------------ consensus_5274#0 CTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTG-TCAAGGTTCTA-AC 538 consensus_5274#2 ---------------------------------GACGAGACAAGG-GGATGGAACTGCAG 26 consensus_5274#1 --------------------------------CGGCGCGGCGGGGCAGCCGGCGCCG--G 26 * * ** * consensus_5274#0 TTTCTCCCTGAAATTAAGTAGTCGGATGTTTGCTCCC----TTGTGAGAAAAAA--GTTG 592 consensus_5274#2 CTCCCAGCTTGGACGACCTGGCAAAGAAGACGTGCCT----GCACTAGTCGACG--GTC- 79 consensus_5274#1 CCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCG 86 * * * ** * ** consensus_5274#0 TTAATTGAAGGAATG---ATGC-TAGGTATCATTTGGTCGAGTTCATTCGGT-TGCTCTC 647 consensus_5274#2 TGAATGGAGAGAGGC---CAGTGTCGGCCTCGGCTGGTCGAGTTCATTCGGT-TGCTCTC 135 consensus_5274#1 CCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCC 146 * ** ** * * * * ** ** * consensus_5274#0 ACATCAAAGGGAGA-GGTTTGGGCATGGGGATCTGGCC----GAAACG------GCAGGC 696 consensus_5274#2 ACATCAAAGGGAGA-GGTTTGGGCATGGGGATCTGGCC----GAAACG------GCAGGC 184 consensus_5274#1 GCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGC 206 ** * * * * * * ** * *** * * *** * ** *** ** consensus_5274#0 T---AGGTTTGGGAAGCTCGATGGATG----AGCCTGAGCCTTTCCTCATCGATACCCTG 749 consensus_5274#2 T---AGGTTTGGGAAGCTCGATGGATG----AGCCTGAGCCTTTCCTCATCGATACCCTG 237 consensus_5274#1 CTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTG 266 * ** ** * * * *** ** * **** * ** * * ** consensus_5274#0 GA--AGGAGCAG--AGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGT 805 consensus_5274#2 GA--AGGAGCAG--AGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGT 293 consensus_5274#1 TTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCC 326 ** **** *** * * * * * ** *** * * * * consensus_5274#0 TGCTGAG--TAGGCTGGGGTTTTCTTCA--CCACCGAAAGTCCTTTGATTCTTGCCGTTG 861 consensus_5274#2 TGCTGAG--TAGGCCGGGGTTTTCTTCA--CCACCGAAAGTCCTTTGATTCTTGCCGTTG 349 consensus_5274#1 AACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTG 386 ** * * ** ** ** * * * * * * * ** * ** *** consensus_5274#0 TCAGTGGAGAGGTTGTCATTGT-CCATCTA-CTGGATACGATCTTTAAAACAAACAGGCG 919 consensus_5274#2 TCAGTGGAGAGGTTGTCATTGT-CCATCTA-CTGGATACGATCTTTAAAACAAACAGGCG 407 consensus_5274#1 CTAATTATGATATTGTCAAGGTATCATTTGGTTGGGGACATGCTATGGCATTGACAAAGG 446 * * ** ****** ** *** * *** ** ** * * *** * consensus_5274#0 ATG-----TTACTCGAT-----ATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAG 969 consensus_5274#2 ATG-----TTACTCGAT-----ATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAG 457 consensus_5274#1 ATGGAGGGTTACTTGGCTGGGGATATTCAGAAAACGGAAGGTTAGGAGAAATTGGCCATA 506 *** ***** * ** * *** *** * ** * ** * consensus_5274#0 CTAGTTTGACATCACATTCCCCTTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGT 1029 consensus_5274#2 CTAGTTTGACATCACATTCCCCCTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGT 517 consensus_5274#1 TTACTCAGGCTTC---TTCTGCC--AAAGAATTACTTGGAAAAACA-GTTGACAAGTACT 560 ** * * * ** *** * ***** *** * * ** * * * ** * consensus_5274#0 CAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGA 1089 consensus_5274#2 CAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGA 577 consensus_5274#1 CTAGC-TCAATGCTAGAGGCCGTTGAAAAGATGGTTG----AGGAAAAAATAAGGAGTGA 615 * * ** *** ** * * ** ** * ** * * * **** consensus_5274#0 AAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTA--TGTTCTATGCCAAAG 1147 consensus_5274#2 AAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTA--TGTTCTATGCCAAAG 635 consensus_5274#1 AGACAATATGCCCATC-ATCTGGGAACCTTCGCTTGTTCATGAAGTGTGTCATGTTGAGG 674 * * ** * ** ***** * ** * * * * *** *** * * consensus_5274#0 CTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAA-GTT 1206 consensus_5274#2 CTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAA-GNT 694 consensus_5274#1 TGTCTGATGTGTCATGTGGGCTCGATCATTCTCTGGTTCTCTGCTC-TGATGGCATCGTA 733 * * * * ** * * ** ** *** * * * * consensus_5274#0 TTGTGTGGTGAACAATATCCTCCGGCAAAATCTTGGTGAAATTTTC 1252 consensus_5274#2 TTGNGTGGTGAACAATATCCTCCAGTAGAATCTTGGTGAAATTTT- 739 consensus_5274#1 CTGAGCGGTGGAGACAACACTTACGGACAG-CTTGGCNA------- 771 ** * **** * * * ** * * * ***** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||