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Oryza sativa
cluster # 5278 cluster # 5278       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5278#0 length = 1306 sequences # 3  

consensusID : consensus_5278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1306
fasta sequence
                              [TCCTCTCCACTCCCGGCGATGGCATCGGCGGCGGCGGCGGCGGCGGCGGAGTGGGAGGAGGCTGAGCGGAAGGTGCTGGTGGCGAGGAAGGCCGCCTTCGGGCTGCCCACCGCCTGCCCGACCTGCCTCCCCGTCCTCCTCTACCTCCGCATGTGCAACGTCCCCTTCGACATCCACGTCGACTCCTCCTTCCCCGACGCCGATCACATACCATATGTCGAGTTTGGTGAATGTGTTGCATTCAACAATGAAAAGGGTGGTGTAATTGAATATCTCAAGGAGGAGAAAATTGTTGACTTGAACTCAAAGCATCCTAGTGTTTCTTATTCGGATGTATTATCCACAAAGGCCATGGTTATGACCTGGCTTTCAGATGCTTTGCAATATGAGCTCTGGCTGGCTTCTGATGGAAGCATTCCACATGATATCTACTTTTCTGATCTCTCCTGGCCCATTGGAAAGATACTCTATTGGAAGAAAACGAGAGAAGTGAAGCAACAACTGGGCATAACTAAGCTTAATGCTGCAGAAAAAGAAGAGGAGATATACCAGAAAGCAAATGCTGCTTATGATGCCTTATCTACGAGATTAGGAGATCAGATCTTTCTCTTTGACAACAGCCCTACAGACGTTGATGCTCTTTTTCTTGGACATGCGCTTTTTGTTCTTAATGTATTACCGGATACGTCTGTGCTGCGAAGCTGTCTGCAGAAGTATGACAACTTGGTAAACTTTACCAAGCACCTCAAGGTCCAATTACTGGAAGCTGATTCTGATTCATCAGCAACAGGATTGGGATCAACTGATCCATCATCATCCTCTACACCCAGGAAAAGAGCGTCTTCTGGTCGGAGTTATAAGCCAAAACCCAGAGCTAAGAAGGAACGAACAGAGGAGGAAAAGAAGTTCAGGCGAAAAGCAAAGTATTTCCTTGCGACACAGCTCGTTGCGGTTCTTCTATTCCTATCGCTCATGGGTGGAGCCGATAGCTCAGAGCTAGACGATGAGGAC-GGTGTAGATTATG-AAGATTAAATCCTCCCTTTGTTGTACTGCACGATTCTTTCTGAAGTGTTAATTTGCCAAAGCACCGGTTGTGGTGCTTGAAAATGTTCTTCCCATGGTTAGTCAGAGAGATCGCATACTTCATCATATTGTAGTTAGCAATACACTGAGTTGGTCAGCAGCCGGCAGTTCCATAGTTTTGGTACTTCAAAAGTAAAACATAATCTGTGGAATTTTGTATTGGTTTCGTTGGACGCAACTGTAAGCATATGCAAAGTAGTTGTGCCGAATGCCCTTTGCCCTG]

[+] EMBL AK059250             [TCCTCTCCACTCCCGGCGATGGCATCGGCGGCGGCGGCGGCGGCGGCGGAGTGGGAGGAGGCTGAGCGGAAGGTGCTGGTGGCGAGGAAGGCCGCCTTCGGGCTGCCCACCGCCTGCCCGACCTGCCTCCCCGTCCTCCTCTACCTCCGCATGTGCAACGTCCCCTTCGACATCCACGTCGACTCCTCCTTCCCCGACGCCGATCACATACCATATGTCGAGTTTGGTGAATGTGTTGCATTCAACAATGAAAAGGGTGGTGTAATTGAATATCTCAAGGAGGAGAAAATTGTTGACTTGAACTCAAAGCATCCTAGTGTTTCTTATTCGGATGTATTATCCACAAAGGCCATGGTTATGACCTGGCTTTCAGATGCTTTGCAATATGAGCTCTGGCTGGCTTCTGATGGAAGCATTCCACATGATATCTACTTTTCTGATCTCTCCTGGCCCATTGGAAAGATACTCTATTGGAAGAAAACGAGAGAAGTGAAGCAACAACTGGGCATAACTAAGCTTAATGCTGCAGAAAAAGAAGAGGAGATATACCAGAAAGCAAATGCTGCTTATGATGCCTTATCTACGAGATTAGGAGATCAGATCTTTCTCTTTGACAACAGCCCTACAGACGTTGATGCTCTTTTTCTTGGACATGCGCTTTTTGTTCTTAATGTATTACCGGATACGTCTGTGCTGCGAAGCTGTCTGCAGAAGTATGACAACTTGGTAAACTTTACCAAGCACCTCAAGGTCCAATTACTGGAAGCTGATTCTGATTCATCAGCAACAGGATTGGGATCAACTGATCCATCATCATCCTCTACACCCAGGAAAAGAGCGTCTTCTGGTCGGAGTTATAAGCCAAAACCCAGAGCTAAGAAGGAACGAACAGAGGAGGAAAAGAAGTTCAGGCGAAAAGCAAAGTATTTCCTTGCGACACAGCTCGTTGCGGTTCTTCTATTCCTATCGCTCATGGGTGGAGCCGATAGCTCAGAGCTAGACGATGAGGAC GGTGTAGATTATG AAGATTAAATCCTCCCTTTGTTGTACTGCACGATTCTTTCTGAAGTGTTAATTTGCCAAAGCACCGGTTGTGGTGCTTGAAAATGTTCTTCCCATGGTTAGTCAGAGAGATCGCATACTTCATCATATTGTAGTTAGCAATACACTGAGTTGGTCAGCAGCCGGCAGTTCCATAGTTTTGGTA                                                                                                   ]
[+] EMBL AK099356             [                CGATGGCATCGGCGGCGGCGGCGGCGGCGGCGGAGTGGGAGGAGGCTGAGCGGAAGGTGCTGGTGGCGAGGAAGGCCGCCTTCGGGCTGCCCACCGCCTGCCCGACCTGCCTCCCCGTCCTCCTCTACCTCCGCATGTGCAACGTCCCCTTCGACATCCACGTCGACTCCTCCTTCCCCGACGCCGATCACATACCATATGTCGAGTTTGGTGAATGTGTTGCATTCAACAATGAAAAGGGTGGTGTAATTGAATATCTCAAGGAGGAGAAAATTGTTGACTTGAACTCAAAGCATCCTAGTGTTTCTTATTCGGATGTATTATCCACAAAGGCCATGGTTATGACCTGGCTTTCAGATGCTTTGCAATATGAGCTCTGGCTGGCTTCTGATGGAAGCATTCCACATGATATCTACTTTTCTGATCTCTCCTGGCCCATTGGAAAGATACTCTATTGGAAGAAAACGAGAGAAGTGAAGCAACAACTGGGCATAACTAAGCTTAATGCTGCAGAAAAAGAAGAGGAGATATACCAGAAAGCAAATGCTGCTTATGATGCCTTATCTACGAGATTAGGAGATCAGATCTTTCTCTTTGACAACAGCCCTACAGACGTTGATGCTCTTTTTCTTGGACATGCGCTTTTTGTTCTTAATGTATTACCGGATACGTCTGTGCTGCGAAGCTGTCTGCAGAAGTATGACAACTTGGTAAACTTTACCAAGCACCTCAAGGTCCAATTACTGGAAGCTGATTCTGATTCATCAGCAACAGGATTGGGATCAACTGATCCATCATCATCCTCTACACCCAGGAAAAGAGCGTCTTCTGGTCGGAGTTATAAGCCAAAACCCAGAGCTAAGAAGGAACGAACAGAGGAGGAAAAGAAGTTCAGGCGAAAAGCAAAGTATTTCCTTGCGACACAGCTCGTTGCGGTTCTTCTATTCCTATCGCTCATGGGTGGAGCCGATAGCTCAGAGCTAGACGATGAGGAC GGTGTAGATTATG AAGATTAAATCCTCCCTTTGTTGTACTGCACGATTCTTTCTGAAGTGTTAATTTGCCAAAGCACCGGTTGTGGTGCTTGAAAATGTTCTTCCCATGGTTAGTCAGAGAGATCGCATACTTCATCATATTGTAGTTAGCAATACACTGAGTTGGTCAGCAGCCGGCAGTTCCATAGTTTTGGTACTTCAAAAGTAAAACATAATCTGTGGAATTTTGTATTGGTTTCGTTGGACGCAACTGTAAGCATATGCAAAGTAGTTGTGCCGAATGCCCTTTGCCCTG]
[+] EMBL CA767422             [                                                                                                                                                                                                                                                                                                 TTGTTGACTTGAACTCAAAGCATCCTAGTGTTTCTTATTCGGATGTATTATCCACAAAGGCCATGGTTACGACCTGGCTTTCAGATGCTTTGCAATATGAGCTCTGGCTGGCTTCTGATGGAAGCATTCCACATGATATCTACTTTTCTGATCTCTCCTGGCCCATTGGAAAGATACTCTATTGGAAGAAAACGAGAGAAGTGAAGCAACAACTGGGCATAACTAAGCTTAATGCTGCAGAAAAAGAAGAGGAGATATACCAGAAAGCAAATGCTGCTTATGATGCCTTATCTACGAGATTAGGAGATCAGATCTTTCTCTTTGACAACAGCCCTACAGACGTTGATGCTCTTTTTCTTGGACATGCGCTTTTTGTTCTTAATGTATTACCGGATACGTCTGTGCTGCGAAGCTGTCTGCAGAAGTATGACAACTTGGTAAACTTTACCAAGCACCTCAAGGTCCAATTACTGGAAGCTGGTTCTGATTCATCAGCAACAGGATTGGGATCAACTGATCCATCATCATCCTCTACACCCAGGAAAAGAGCGTCTTCTGGTCGGAGTTATAAGCCAAAACCCAGAGCTAAGAAGGAACGAACAGAGGAGGAAAAGAAGNTCAGGCGAAAAGCAAAGTATTTCCTTGCGACACAGCTCGNTGCGGGTCTTCTATTCCTATCGCTCATGGGTGGAGCCGATAGCTCAGAGCTAGACGATGAGGACGGGTGTAGATTATGAAAGATTAAATCCTCCCTTTGGTGNACTGNACGATTCTTTCTGAAGNGGTAATTTGNCCAAGCACCGGNTGNGGNGCTTGAAAAAGGTCTTTCCATGGNTAGTCAGANAGANCGCATACTTCATCATATTGGAGTTAGCAAna                                                                                                                                            ]


>consensus_5278#0 TCCTCTCCACTCCCGGCGATGGCATCGGCGGCGGCGGCGGCGGCGGCGGAGTGGGAGGAG GCTGAGCGGAAGGTGCTGGTGGCGAGGAAGGCCGCCTTCGGGCTGCCCACCGCCTGCCCG ACCTGCCTCCCCGTCCTCCTCTACCTCCGCATGTGCAACGTCCCCTTCGACATCCACGTC GACTCCTCCTTCCCCGACGCCGATCACATACCATATGTCGAGTTTGGTGAATGTGTTGCA TTCAACAATGAAAAGGGTGGTGTAATTGAATATCTCAAGGAGGAGAAAATTGTTGACTTG AACTCAAAGCATCCTAGTGTTTCTTATTCGGATGTATTATCCACAAAGGCCATGGTTATG ACCTGGCTTTCAGATGCTTTGCAATATGAGCTCTGGCTGGCTTCTGATGGAAGCATTCCA CATGATATCTACTTTTCTGATCTCTCCTGGCCCATTGGAAAGATACTCTATTGGAAGAAA ACGAGAGAAGTGAAGCAACAACTGGGCATAACTAAGCTTAATGCTGCAGAAAAAGAAGAG GAGATATACCAGAAAGCAAATGCTGCTTATGATGCCTTATCTACGAGATTAGGAGATCAG ATCTTTCTCTTTGACAACAGCCCTACAGACGTTGATGCTCTTTTTCTTGGACATGCGCTT TTTGTTCTTAATGTATTACCGGATACGTCTGTGCTGCGAAGCTGTCTGCAGAAGTATGAC AACTTGGTAAACTTTACCAAGCACCTCAAGGTCCAATTACTGGAAGCTGATTCTGATTCA TCAGCAACAGGATTGGGATCAACTGATCCATCATCATCCTCTACACCCAGGAAAAGAGCG TCTTCTGGTCGGAGTTATAAGCCAAAACCCAGAGCTAAGAAGGAACGAACAGAGGAGGAA AAGAAGTTCAGGCGAAAAGCAAAGTATTTCCTTGCGACACAGCTCGTTGCGGTTCTTCTA TTCCTATCGCTCATGGGTGGAGCCGATAGCTCAGAGCTAGACGATGAGGACGGTGTAGAT TATGAAGATTAAATCCTCCCTTTGTTGTACTGCACGATTCTTTCTGAAGTGTTAATTTGC CAAAGCACCGGTTGTGGTGCTTGAAAATGTTCTTCCCATGGTTAGTCAGAGAGATCGCAT ACTTCATCATATTGTAGTTAGCAATACACTGAGTTGGTCAGCAGCCGGCAGTTCCATAGT TTTGGTACTTCAAAAGTAAAACATAATCTGTGGAATTTTGTATTGGTTTCGTTGGACGCA ACTGTAAGCATATGCAAAGTAGTTGTGCCGAATGCCCTTTGCCCTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)