These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5289#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence [AATCTCAATACAATGCNGGTTGTTGGANCNGTGGGGTTCATGGNCCACAGGTTGGACATTCCAAGCGNTNTTGATCCTCATTGGGCGTCGATGATCGAGAGTTNCTGGGACAGTGACCCGCAGCNTCGCCCTTCGTTCCAAGAACTGCTAGATCAGCTCCGAGATCTGCAGAAGCAATACAACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCCAAGATGAGTNTTGNCGATTGCTAACTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGNGGTCCCAGCAGGCCAGCAAAATGGGATTCGTTAGGAGTCCNGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTTTGCTNCTTTTCTGAAGAAGCTGTGGCAGCAATTGAGTTTGTGCCAGAAAAAGATGGTGCATTCGATCTGAAGCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAGCNGTGATGACCGATGAAATTTCGGCAGTCATCGAATACAATGCTGTATTCACCCTATTAACCATGTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGTNTTCTGCAAAAAAAAA] [+] EMBL AU030126 [AATCTCAATACAATGCNGGTTGTTGGANCNGTGGGGTTCATGGNCCACAGGTTGGACATTCCAAGCGNTNTTGATCCTCATTGGGCGTCGATGATCGAGAGTTNCTGGGACAGTGACCCGCAGCNTCGCCCTTCGTTCCAAGAACTGCTAGATCAGCTCCGAGATCTGCAGAAGCAATACAACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCCAAGATGAGTNTTGNCGATTGCTAACTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGNGGTCCCAGCAGGCCAGCAAAATGGGATTCGTTAGGAGTCCNGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTTTGCTNCTTTTCTGAAGAAGCTGTGGCAGCAATTGAGTTTGTGCCAGAAAAAGATGGTGCATTCGATCTGAAGCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAGCNGTGATGACCGATGAAATTTCGGCAGTCATCGAATACAATGCTGTATTCACCCTATTAACCATGTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGTNTTCTGCAAAAAAAAA] [+] EMBL AU030125 [ CAATACAATGCAGGTTGTTGGAGCAGTGGGGTTCATGGACCACAGGTTGGACATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCGAGAGTTGCTGGGACAGTGACCCGCAGCGTCGCCCTTCGTTCCAAGAACNGCTAGATCAGCTCCGAGATCTGCAGAAGCAATACAACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCCAAGATGAGTGTTGACGATTGCTAACTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGAGGTCCCAGCAGGCCAGCAAAATGGGATTCGTANGGAGTCCAGTCTAACCAAAANGGG TCTG ATTCTGAACATTTTGC ACTTTCCTGAAG ANCTGTGGCAGCAtt ] consensusID : consensus_5289#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [GCCACAATGGATGGCTCCAGAGGTTGTTGGAGCAGTGGGGTTCATGGACCACAGGTTTGGACATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCTAGAGTTGCTGGGACAGTGACCCGCAGCGTCGCCCTTCGTTCCAAGAACTGCTAGATCATCTCCAACATCTGCATAAGCAATACAACTTGCATGCTCAACTGCAGCGAACTGCATCTGCCAAGATGATTGTTGACAATTGCTAACTTCAAAATCTGAATGGTCCATGTTCATCTTGTTGCCAATATGATGTCCCATCACGCCATCAAAATGGGATTCGATATGAGTCCAGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTTTGCTACTTTTCTGAAGAACCTGTGGCAGCAATTGAGTTTGTGCCAAAAAAAGATGGTGCATTCGATCTGAACCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAACAGTGATGACCGATGAAATTTCGGCAGTCATCTAATACAATGCTGTATTCACCCTATTAACCATGTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGT] [+] EMBL CB679016 [GCCACAATGGATGGCTCCAGAGGTTGTTGGAGCAGTGGGGTTCATGGACCACAGGTTTGGACATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCTAGAGTTGCTGGGACAGTGACCCGCAGCGTCGCCCTTCGTTCCAAGAACTGCTAGATCATCTCCAACATCTGCATAAGCAATACAACTTGCATGCTCAACTGCAGCGAACTGCATCTGCCAAGATGATTGTTGACAATTGCTAACTTCAAAATCTGAATGGTCCATGTTCATCTTGTTGCCAATATGATGTCCCATCACGCCATCAAAATGGGATTCGATATGAGTCCAGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTTTGCTACTTTTCTGAAGAACCTGTGGCAGCAATTGAGTTTGTGCCAAAAAAAGATGGTGCATTCGATCTGAACCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAACAGTGATGACCGATGAAATTTCGGCAGTCATCTAATACAATGCTGTATTCACCCTATTAACCATGTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5289#0 AATCTCAATACAATGCN-----GGTTGTTGGANCNGTGGGGTTCATGGNCCACAGGTT-G 54 consensus_5289#1 -GCCACAATGGATGGCTCCAGAGGTTGTTGGAGCAGTGGGGTTCATGGACCACAGGTTTG 59 * **** * ** ********** * ************* ********* * consensus_5289#0 GACATTCCAAGCGNTNTTGATCCTCATTGGGCGTCGATGATCGAGAGTTNCTGGGACAGT 114 consensus_5289#1 GACATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCTAGAGTTGCTGGGACAGT 119 ************* * ************************** ****** ********** consensus_5289#0 GACCCGCAGCNTCGCCCTTCGTTCCAAGAACTGCTAGATCAGCTCCGAGATCTGCAGAAG 174 consensus_5289#1 GACCCGCAGCGTCGCCCTTCGTTCCAAGAACTGCTAGATCATCTCCAACATCTGCATAAG 179 ********** ****************************** **** * ******* *** consensus_5289#0 CAATACAACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCCAAGATGAGTNTTGNCGAT 234 consensus_5289#1 CAATACAACTTGCATGCTCAACTGCAGCGAACTGCATCTGCCAAGATGATTGTTGACAAT 239 ************** ********************* ************ * *** * ** consensus_5289#0 TGCTAACTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGNGGTCCCAGCA 294 consensus_5289#1 TGCTAACTTCAAAATCTGAATGGTCCATGTTCATCTTGTTGCCAATATGATGTCCCATCA 299 ********************************* *************** ****** ** consensus_5289#0 GGCCAGCAAAATGGGATTCGTTAGGAGTCCNGTCTAACCAAAAAGGGTTCTGAATTCTGA 354 consensus_5289#1 CGCCATCAAAATGGGATTCGATATGAGTCCAGTCTAACCAAAAAGGGTTCTGAATTCTGA 359 **** ************** ** ****** ***************************** consensus_5289#0 ACATTTTGCTNCTTTTCTGAAGAAGCTGTGGCAGCAATTGAGTTTGTGCCAGAAAAAGAT 414 consensus_5289#1 ACATTTTGCTACTTTTCTGAAGAACCTGTGGCAGCAATTGAGTTTGTGCCAAAAAAAGAT 419 ********** ************* ************************** ******** consensus_5289#0 GGTGCATTCGATCTGAAGCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAGCNGT 474 consensus_5289#1 GGTGCATTCGATCTGAACCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAACAGT 479 ***************** ************************************* * ** consensus_5289#0 GATGACCGATGAAATTTCGGCAGTCATCGAATACAATGCTGTATTCACCCTATTAACCAT 534 consensus_5289#1 GATGACCGATGAAATTTCGGCAGTCATCTAATACAATGCTGTATTCACCCTATTAACCAT 539 **************************** ******************************* consensus_5289#0 GTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGTNTTCTGCAAAAAAAAA 589 consensus_5289#1 GTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGT---------------- 578 *************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||