These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence [CGATGATGTTAAGTAAGAAAAAAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGTTGCCAGTCTGATAGTGCTGGTGCTGATCGCGTTATTTGTAATCCTGGCACCGATGCTTTCCCAGTTTGCCTATGACGATACTGACTGGGCGATGATGTCCAGCGCCCCGGATATGGAGTCCGGTCACTACTTTGGTACTGACTCATCCGGTCGCGACCTGCTTGTGCGCGTTGCGATTGGCGGGCGTATCTCACTCATGGTCGGTGTTGCTGCGGCACTGGTGGCTGTGGTCGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCGGTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCGGTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTTTCCTGGCTGGATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTACTCGGTGTGGTGGTGGTCTACGCATCACTTCTGGTGCCCAGCATGATCCTCTTTGAATCTTTCCTTAGCTTCCTGGGGTTGGGTACGCAAGAGCCGTTAAGCAGCTGGGGTGCATTGCTGAGTGATGGCGCGAACTCGATGGAAGTCTCTCCATGGTTATTGTTGTTCCCAGCGGGATTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATC] [+] EMBL CF340073 [CGATGATGTTAAGTAAGAAAAAAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGTTGCCAGTCTGATAGTGCTGGTGCTGATCGCGTTATTTGTAATCCTGGCACCGATGCTTTCCCAGTTTGCCTATGACGATACTGACTGGGCGATGATGTCCAGCGCCCCGGATATGGAGTCCGGTCACTACTTTGGTACTGACTCATCCGGTCGCGACCTGCTTGTGCGCGTTGCGATTGGCGGGCGTATCTCACTCATGGTCGGTGTTGCTGCGGCACTGGTGGCTGTGGTCGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCGGTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCGGTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTTTCCTGGCTGGATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGC ] [-] EMBL CF306713 [ CGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCGGTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCGGTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTTTCCTGGCTGGATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTACTCGGTGTGGTGGTGGTCTACGCATCACTTCTGGTGCCCAGCATGATCCTCTTTGAATCTTTCCTTAGCTTCCTGGGGTTGGGTACGCAAGAGCCGTTAAGCAGCTGGGGTGCATTGCTGAGTGATGGCGCGAACTCGATGGAAGTCTCTCCATGGTTATTGTTGTTCCCAGCGGGATTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATC] consensusID : consensus_5290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GCTGTGGTCGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCNNTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCNNTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTNTCCTGGCTGGATATGGCTCNNNTTGTGCGTGGGCAAACCCTGNNTCTGNNNNGNNNNNNNNTTATTGAGGCGGCACANGNNNNNGNNNTATCCACN] [+] EMBL CF195763 [GCTGTGGTCGTCGGGACACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCNNTAATGATGCGTCTGCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTTCNNTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTNTCCTGGCTGGATATGGCTCNNNTTGTGCGTGGGCAAACCCTGNNTCTGNNNNGNNNNNNNNTTATTGAGGCGGCACANGNNNNNGNNNTATCCACN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5290#0 CGATGATGTTAAGTAAGAAAAAAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGT 60 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 CGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGT 120 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 TGCCAGTCTGATAGTGCTGGTGCTGATCGCGTTATTTGTAATCCTGGCACCGATGCTTTC 180 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 CCAGTTTGCCTATGACGATACTGACTGGGCGATGATGTCCAGCGCCCCGGATATGGAGTC 240 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 CGGTCACTACTTTGGTACTGACTCATCCGGTCGCGACCTGCTTGTGCGCGTTGCGATTGG 300 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 CGGGCGTATCTCACTCATGGTCGGTGTTGCTGCGGCACTGGTGGCTGTGGTCGTCGGGAC 360 consensus_5290#1 -------------------------------------------GCTGTGGTCGTCGGGAC 17 ***************** consensus_5290#0 ACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCGGTAATGATGCGTCT 420 consensus_5290#1 ACTTTATGGTTCGCTTTCCGGTTATCTGGGCGGTAAAGTGGATTCNNTAATGATGCGTCT 77 ********************************************* ************* consensus_5290#0 GCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTT 480 consensus_5290#1 GCTGGAAATCCTCAACTCCTTCCCATTCATGTTCTTCGTCATTTTGCTGGTGACCTTTTT 137 ************************************************************ consensus_5290#0 CGGTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTTTCCTGGCTGGATATGGC 540 consensus_5290#1 CNNTCAAAACATCCTGCTGATTTTCGTGGCGATAGGCATGGTNTCCTGGCTGGATATGGC 197 * *************************************** ***************** consensus_5290#0 TCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACA 600 consensus_5290#1 TCNNNTTGTGCGTGGGCAAACCCTGNNTCTGNNNNGNNNNNNNNTTATTGAGGCGGCACA 257 ** ******************** **** * **************** consensus_5290#0 AGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTACTCGG 660 consensus_5290#1 NGNNNNNGNNNTATCCACN----------------------------------------- 276 * * **** ** consensus_5290#0 TGTGGTGGTGGTCTACGCATCACTTCTGGTGCCCAGCATGATCCTCTTTGAATCTTTCCT 720 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 TAGCTTCCTGGGGTTGGGTACGCAAGAGCCGTTAAGCAGCTGGGGTGCATTGCTGAGTGA 780 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 TGGCGCGAACTCGATGGAAGTCTCTCCATGGTTATTGTTGTTCCCAGCGGGATTCCTCGT 840 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 GGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAA 900 consensus_5290#1 ------------------------------------------------------------ consensus_5290#0 AGATC 905 consensus_5290#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||