These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1100 fasta sequence [TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAGCAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTTAAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGATCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAGTGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGACATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAGGTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCAAAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTGTCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTTGGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGAGTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACCGAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCTTTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTCTACAGTAAATAAAAAGGTGACGTCGTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGT] [+] EMBL AK058656 [TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAGCAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTTAAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGATCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAGTGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGACATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAGGTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCAAAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTGTCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTTGGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGAGTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACCGAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCTTTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTCTACAGTAAATAAAAAGGTGACGTCGTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGT] consensusID : consensus_5291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 438 fasta sequence [AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCAGTATTAGATTTTCTTAAT] [-] EMBL BI306032 [AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCAGTATTAGATTTTCTTAAT] [-] EMBL CB966426 [ GCACTTGAGCCAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTT CAGTATTAGATTTTCTTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5291#0 TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAG 60 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 CAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTT 120 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 AAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGA 180 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 TCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAG 240 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 TGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGAC 300 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 ATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAG 360 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 GTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCA 420 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 AAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTG 480 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 TCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTT 540 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 GGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGA 600 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 GTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACC 660 consensus_5291#1 ------------------------------------------------------------ consensus_5291#0 GAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCT 720 consensus_5291#1 -----AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTG--------- 46 ********************************************** consensus_5291#0 TTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTC 780 consensus_5291#1 -----------------------------------GAGCTTGCAAGGCGTCAAGCCAGTC 71 ************************* consensus_5291#0 AACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTC 840 consensus_5291#1 AACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTC 131 ************************************************************ consensus_5291#0 TGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATT-CTAC 899 consensus_5291#1 TGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTAC 191 ******************************************************* **** consensus_5291#0 AGTAAATAAAAAGGTGACGTCGT-GGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGA 958 consensus_5291#1 AGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGA 251 ********** ************ ************************************ consensus_5291#0 TGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGAC 1018 consensus_5291#1 TGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTAC-------AAGTGTCCGATGGAC 304 ************************************** *************** consensus_5291#0 AAAAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATT 1078 consensus_5291#1 AAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATT 364 ************************** ************** ****************** consensus_5291#0 TTTAAACTAATCATTGGAAAGT-------------------------------------- 1100 consensus_5291#1 TTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCAGTAT 424 ********************** consensus_5291#0 -------------- consensus_5291#1 TAGATTTTCTTAAT 438 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||