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Oryza sativa
cluster # 5295 cluster # 5295       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5295#0 length = 1345 sequences # 3  

consensusID : consensus_5295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1345
fasta sequence
                              [GGACGAGACAAGGGGGTCCAAAACTGGTGCTATCCAGAATTTGCAGCTAGGCAGAATAGGAGATTTATCGGATTTGATGGCTCTGCTGTGGTTGCCTTGCGGGCTGACTTTTCAGCTGTGTGATATGTTCAACATGGGAGTACTACTTTAGCGATAACGAGGATAGCAAAACATTTGTTTATGCGAGTGACACTTATTTCTTTCACTCCTTGAAAAAGGACTCTCCATTATGGTTGAATGGTTTTCAAAGGTTTCAGATTATCATCTCTCCTCTGAAGGATGACCAAGCCTTGGATACTGATGCACAACTAATGAAGGCAGATTTCATCTTTCGGAGTTCCTACTTTAAGACAAAACACTTTACACATTCCATTGATCTTGATAAGTTTCTTGAAATAAACGGTACCTTTGATGTTCCTTCCGAAACTGAGGGCATTCTTGGTCATGCTGAACTGGTATCATTAAAGAGATTAGCGACCACCAGGTCTTCAGACCTGAATATTACTAGTATGGAAGCAGTTCGAGAACTTTGGATAGAGAATTGTAGCCAACTGGAGAGTCTTCTCTCAGTGGATGAAATTGAGATTTTGTCTGCATGGGGCAACTTGCACAATCTATGGATCTCCAACCTAGAAAGGTTGTCATCCCTTTTGGAAGGGGTGAAAGATGTGGTTAGTTTCAGTTGTCTGAAGCACTTGCTCATTGATTGTTGTCCAAATCTCAAGTGGATCTTTCCTTCAATGGTATGTCTTCCGAATCTTGAAACGATGCATGTAAAGTTTTGTGACATTCTGGAGAGGGTATTTGAAGATGACAGTGTCTTGGGAGATGACGCTCTTCCAAGGCTGCAGTCACTGGAACTGTGGGAGCTTCCTGAGCTATCCTGTATCTGTGGTGGAACTTTGCCGTCTCTGAAGAATCTCAAGGTGAGAAGCTGTGCAAAGCTGAGAAAAATCCCTGTTGGCGTTGATGAAAACAGTCCATTTGTCACGACGATAGGAGAAACATTCTGGTGGGACTGTTTAATCTGGGACGACGAAAGCATTAAGCGTTGGATACTGTTCAGAAAGTGGGGGCCAATGCTACCATATCTTGCAACTGAAGGATGAAGATGCATCCGATTCCGGGCTGAACATTTCTGCTGATTGGTGGTTCTCAACACGAGGAATATGGAAGCAGCAGCTCCAAGGATTCGACACAATTGAGAAAAACAACAGTGAACAGATATCCAAAAGCACATGAGCTTCTGTTTAGCAGGCCCATATATTAAGTTGTACTATATGGTTTTATCAAAGAACATCACTCTTAGTTGGAAAATTT-ATGATAAA-TGTGGAC-GGTTAATTAG]

[+] EMBL CA767534             [GGACGAGACAAGGGGGTCCAAAACTGGTGCTATCCAGAATTTGCAGCTAGGCAGAATAGGAGATTTATCGGATTTGATGGCTCTGCTGTGGTTGCCTTGCGGGCTGACTTTTCAGCTGTGTGATATGTTCAACATGGGAGTACTACTTTAGCGATAACGAGGATAGCAAAACATTTGTTTATGCGAGTGACACTTATTTCTTTCACTCCTTGAAAAAGGACTCTCCATTATGGTTGAATGGTTTTCAAAGGTTTCAGATTATCATCTCTCCTCTGAAGGATGACCAAGCCTTGGATACTGATGCACAACTAATGAAGGCAGATTTCATCTTTCGGAGTTCCTACTTTAAGACAAAACACTTTACACATTCCATTGATCTTGATAAGTTTCTTGAAATAAACGGTACCTTTGATGTTCCTTCCGAAACTGAGGGCATTCTTGGTCATGCTGAACTGGTATCATTAAAGAGATTAGCGACCACCAGGTCTTCAGACCTGAATATTACTAGTATGGAAGCAGTTCGAGAACTTTGGATAGAGAATTGTAGCCAACTGGAGAGTCTTCTCTCAGTGGATGAAATTGAGATTTTGTCTGCATGGGGCAACTTGCACAATCTATGGATCTCCAACCTAGAAAGGTTGTCATCCCTTTTGGAAGGGGTGAAAGATGTGGTTAGTTTCAGTTGTCTGAAGCACTTGCTCATTGATTGGTGTCCAAATCTCAAGTGGATCTTTCCTTCAATGGTATGTCTTCCGAATCTTGAAACGATGCATGTAAAGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CB670076             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTCAGTAGATGAAATTGAGATTTTGTCTGCATGGGGCAACTTGCACAATCTATGGATCTCCAACCTAGAAAGGTTGTCATCCCTTTTGGAAGGGGTGAAAGATGTGGTTAGTTTCAGTTGTCTGAAGCACTTGCTCATTGATTGTTGTCCAAATCTCAAGTGGATCTTTCCTTCAATGGTATGTCTTCCGAATCTTGAAACGATGCATGTAAAGTTTTGTGACATTCTGGAGAGGGTATTTGAAGATGACAGTGTCTTGGGAGATGACGCTCTTCCAAGGCTGCAGTCACTGGAACTGTGGGAGCTTCCTGAGCTATCCTGTATCTGTGGTGGAACTTTGCCGTCTCTGAAGAATCTCAAGGTGAGAAGCTGTGCAAAGCTGAGAAAAATCCCTGTTGGCGTTGATGAAAACAGTCCATTTGTCACGACGATAGGAGAAACATTCTGGTGGGACTGTTTAATCTGGGACGACGAAAGCATTAAGCGTTGGATACTGTTCAGAAAGTGGGGGCCAATGCTACCATATCTTGCAACTGAAGGATGAAGATGCATCCGATTCCGGGCTGAACATTTCTGCTGATTGGTGGTTCTCAACACGAGGAATATGGAAGCAGCAGCTCCAAGGATTCGACACAATTGAGAAAAACAACAGTGAACAGATATCCAAAAGCACATGAGCTTCTGTTTAGCAGGCCCATATATTAAGTTGTACTATATGGTTTTATCAAAGAACATCACTCTTAGTTGGAAAATTT ATGATAAA TGTGGAC GGTTAAT   ]
[-] EMBL CB635275             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTTGTCTGAAGCACTTGCTCATTGATTGTTGTCCAAATCTCAAGTGGATCTTTCCTTCAATGGTATGTCTTCCGAATCTTGAAACGATGCATGTAAAGTTTTGTGACATTCTGGAGAGGGTATTTGAAGATGACAGTGTCTTGGGAGATGACGCTCTTCCAAGGCTGCAGTCACTGGAACTGTGGGAGCTTCCTGAGCTATCCTGTATCTGTGGTGGAACTTTGCCGTCTCTGAAGAATCTCAAGGTGAGAAGCTGTGCAAAGCTGAGAAAAATCCCTGTTGGCGTTGATGAAAACAGTCCATTTGTCACGACGATAGGAGAAACATTCTGGTGGGACTGTTTAATCTGGGACGACGAAAGCATTAAGCGTTGGATACTGTTCAGAAAGTGGGGGCCAATGCTACCATATCTTGCAACTGAAGGATGAAGATGCATCCGATTCCGGGCTGAACATTTCTGCTGATTGGTGGTTCTCAACACGAGGAATATGGAAGCAGCAGCTCCAAGGATTCGACACAATTGAGAAAAACAACAGTGAACAGATATCCAAAAGCACATGAGCTTCTGTTTAGCAGGCCCATATATTAAGTTGTACTATATGGTTTTATCAAAGAACATCACTCTTATTTGGAAAATTTAAGGATAAAGTGTGGACGGGTTAATTAG]


>consensus_5295#0 GGACGAGACAAGGGGGTCCAAAACTGGTGCTATCCAGAATTTGCAGCTAGGCAGAATAGG AGATTTATCGGATTTGATGGCTCTGCTGTGGTTGCCTTGCGGGCTGACTTTTCAGCTGTG TGATATGTTCAACATGGGAGTACTACTTTAGCGATAACGAGGATAGCAAAACATTTGTTT ATGCGAGTGACACTTATTTCTTTCACTCCTTGAAAAAGGACTCTCCATTATGGTTGAATG GTTTTCAAAGGTTTCAGATTATCATCTCTCCTCTGAAGGATGACCAAGCCTTGGATACTG ATGCACAACTAATGAAGGCAGATTTCATCTTTCGGAGTTCCTACTTTAAGACAAAACACT TTACACATTCCATTGATCTTGATAAGTTTCTTGAAATAAACGGTACCTTTGATGTTCCTT CCGAAACTGAGGGCATTCTTGGTCATGCTGAACTGGTATCATTAAAGAGATTAGCGACCA CCAGGTCTTCAGACCTGAATATTACTAGTATGGAAGCAGTTCGAGAACTTTGGATAGAGA ATTGTAGCCAACTGGAGAGTCTTCTCTCAGTGGATGAAATTGAGATTTTGTCTGCATGGG GCAACTTGCACAATCTATGGATCTCCAACCTAGAAAGGTTGTCATCCCTTTTGGAAGGGG TGAAAGATGTGGTTAGTTTCAGTTGTCTGAAGCACTTGCTCATTGATTGTTGTCCAAATC TCAAGTGGATCTTTCCTTCAATGGTATGTCTTCCGAATCTTGAAACGATGCATGTAAAGT TTTGTGACATTCTGGAGAGGGTATTTGAAGATGACAGTGTCTTGGGAGATGACGCTCTTC CAAGGCTGCAGTCACTGGAACTGTGGGAGCTTCCTGAGCTATCCTGTATCTGTGGTGGAA CTTTGCCGTCTCTGAAGAATCTCAAGGTGAGAAGCTGTGCAAAGCTGAGAAAAATCCCTG TTGGCGTTGATGAAAACAGTCCATTTGTCACGACGATAGGAGAAACATTCTGGTGGGACT GTTTAATCTGGGACGACGAAAGCATTAAGCGTTGGATACTGTTCAGAAAGTGGGGGCCAA TGCTACCATATCTTGCAACTGAAGGATGAAGATGCATCCGATTCCGGGCTGAACATTTCT GCTGATTGGTGGTTCTCAACACGAGGAATATGGAAGCAGCAGCTCCAAGGATTCGACACA ATTGAGAAAAACAACAGTGAACAGATATCCAAAAGCACATGAGCTTCTGTTTAGCAGGCC CATATATTAAGTTGTACTATATGGTTTTATCAAAGAACATCACTCTTAGTTGGAAAATTT ATGATAAATGTGGACGGTTAATTAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)