Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5296 cluster # 5296       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5296#0 length = 893 sequences # 2  
consensus_5296#1 length = 781 sequences # 1  

consensusID : consensus_5296#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 893
fasta sequence
                              [GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGC-GGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAA-GCGGGGGTGCCGGCGACGGAGCCGTGCTG-CCGCTGCTGAAC-GGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAA-GCCAACGTGCTGGGCATCAACCTCAA-CT-CCCATCCACCTCACCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGTTTTTGAAAAAAAA]

[+] EMBL AU101404             [GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGC GGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAA GCGGGGGTGCCGGCGACGGAGCCGTGCTG CCGCTGCTGAAC GGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAA GCCAACGTGCTGGGCATCAACCTCAA CT CCCATCCACCTCAC                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU101405             [                                                                                                                                                                                                                GGCGGAAGCGGCGGTTACGGAGGAGGCAACGGCGGGNTACGGAGNAAGCGGCAGCAACGGCGGCGGATACGGCGNCGGCGGGGGGTCGTCGACGANCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAAGGCGGGGGTGCCGGCGACGGAGCCGTGCTGCCCGCTGCTGAACGGGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAAGGCCAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGTTTTTGAAAAAAAA]


>consensus_5296#0 GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTG TGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCT CCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCA TGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGG CGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGAC GAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGT GCTGGACCTGATAAAGGCGAAGCGGGGGTGCCGGCGACGGAGCCGTGCTGCCGCTGCTGA ACGGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAAGCCAACGTGCTG GGCATCAACCTCAACTCCCATCCACCTCACCCTCATCCTCAACTTCTGCGGCAAGGGCGT CCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATT ACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGT GTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTC CTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCG CTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGT TTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGTTTTTGAAAAAAAA



consensusID : consensus_5296#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 781
fasta sequence
                              [ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATC]

[+] EMBL AK063684             [ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATC]


>consensus_5296#1 ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGC TAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCC CTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGC AGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGC GGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGC GGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAG CTGGGGGTGTGCGCGAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTC ATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTT TCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTT GGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAG TTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATT GCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTT GTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAAT C



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5296#0      --------------------GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGC 40
consensus_5296#1      ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGC 60
                                          ****************************************

consensus_5296#0      TAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCC 100
consensus_5296#1      TAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCC 120
                      ************************************************************

consensus_5296#0      CTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGC 160
consensus_5296#1      CTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGC 180
                      ************************************************************

consensus_5296#0      AGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGC 220
consensus_5296#1      AGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGC 240
                      ************************************************************

consensus_5296#0      GGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGC 280
consensus_5296#1      GGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGC 300
                      ************************************************************

consensus_5296#0      GGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAG 340
consensus_5296#1      GGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAG 360
                      ************************************************************

consensus_5296#0      CTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAAGCGGGGGTGCCGGCGACGG 400
consensus_5296#1      CTGGGGGTGTGCGCGAACGTGCTGGGC--------------------------------- 387
                      ************************* *                                 

consensus_5296#0      AGCCGTGCTGCCGCTGCTGAACGGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACG 460
consensus_5296#1      ------------------------------------------------------------
                                                                                  

consensus_5296#0      GCCATCAAGCCAACGTGCTGGGCATCAACCTCAACTCCCATCCACCTCACCCTCATCCTC 520
consensus_5296#1      ---ATCAACC--------------TCAACCTC----CCCATCCACCTCAGCCTCATCCTC 426
                         ***** *              ********    ************* **********

consensus_5296#0      AACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCC 580
consensus_5296#1      AACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCC 486
                      ************************************************************

consensus_5296#0      ACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGT 640
consensus_5296#1      ACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGT 546
                      ************************************************************

consensus_5296#0      CATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGT 700
consensus_5296#1      CATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGT 606
                      ************************************************************

consensus_5296#0      GTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTC 760
consensus_5296#1      GTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTC 666
                      ************************************************************

consensus_5296#0      CTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATG 820
consensus_5296#1      CTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATG 726
                      ************************************************************

consensus_5296#0      TCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGT 880
consensus_5296#1      TCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATC----- 781
                      *******************************************************     

consensus_5296#0      TTTTGAAAAAAAA 893
consensus_5296#1      -------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)