These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 893 fasta sequence [GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGC-GGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAA-GCGGGGGTGCCGGCGACGGAGCCGTGCTG-CCGCTGCTGAAC-GGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAA-GCCAACGTGCTGGGCATCAACCTCAA-CT-CCCATCCACCTCACCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGTTTTTGAAAAAAAA] [+] EMBL AU101404 [GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGC GGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAA GCGGGGGTGCCGGCGACGGAGCCGTGCTG CCGCTGCTGAAC GGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAA GCCAACGTGCTGGGCATCAACCTCAA CT CCCATCCACCTCAC ] [+] EMBL AU101405 [ GGCGGAAGCGGCGGTTACGGAGGAGGCAACGGCGGGNTACGGAGNAAGCGGCAGCAACGGCGGCGGATACGGCGNCGGCGGGGGGTCGTCGACGANCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAAGGCGGGGGTGCCGGCGACGGAGCCGTGCTGCCCGCTGCTGAACGGGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACGGCCATCAAGGCCAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGTTTTTGAAAAAAAA] consensusID : consensus_5296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence [ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATC] [+] EMBL AK063684 [ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGCTAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCCCTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGCAGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGCGGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGCGGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAGCTGGGGGTGTGCGCGAACGTGCTGGGCATCAACCTCAACCTCCCCATCCACCTCAGCCTCATCCTCAACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5296#0 --------------------GGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGC 40 consensus_5296#1 ACACTTGCAGTTGCAGTGGTGGTAGACTGGTAGTGCATTCTCAGCTTAATTTGCTTGAGC 60 **************************************** consensus_5296#0 TAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCC 100 consensus_5296#1 TAGTAGCTGCTCGTGAGCTGTGCACCAATGGCGTCGTCCAGGGCGTCGGCTTCCTGTGCC 120 ************************************************************ consensus_5296#0 CTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGC 160 consensus_5296#1 CTCTTCCTCGCCCTCAACCTCCTCCTCTTCGCCATCACCACCGCCTGCCCGTCCTGCGGC 180 ************************************************************ consensus_5296#0 AGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGC 220 consensus_5296#1 AGCGGCGGCGGCGGCGGCCATGGCCATTACGGTGGCGGCGGCAGCAGCGGCGGAGGCGGC 240 ************************************************************ consensus_5296#0 GGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGC 280 consensus_5296#1 GGCTACGGAGGAGGCAGCGGCGGCTACGGAGGAGGCGGCAGCAGCGGCGGCGGATACGGC 300 ************************************************************ consensus_5296#0 GGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAG 340 consensus_5296#1 GGCGGCGGGGGGTCGTCGACGAGCGGGTGGTACGGGAAGTGCCCGACGGACGCGCTGAAG 360 ************************************************************ consensus_5296#0 CTGGGGGTGTGCGCGAACGTGCTGGACCTGATAAAGGCGAAGCGGGGGTGCCGGCGACGG 400 consensus_5296#1 CTGGGGGTGTGCGCGAACGTGCTGGGC--------------------------------- 387 ************************* * consensus_5296#0 AGCCGTGCTGCCGCTGCTGAACGGCTGGTGGACCTGGAGGCGGCGGTGTGCCTGTGCACG 460 consensus_5296#1 ------------------------------------------------------------ consensus_5296#0 GCCATCAAGCCAACGTGCTGGGCATCAACCTCAACTCCCATCCACCTCACCCTCATCCTC 520 consensus_5296#1 ---ATCAACC--------------TCAACCTC----CCCATCCACCTCAGCCTCATCCTC 426 ***** * ******** ************* ********** consensus_5296#0 AACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCC 580 consensus_5296#1 AACTTCTGCGGCAAGGGCGTCCCCACCGGCTTCATGTGCTCTTAATCTCTCTTTTCATCC 486 ************************************************************ consensus_5296#0 ACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGT 640 consensus_5296#1 ACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAATTTGGGAGT 546 ************************************************************ consensus_5296#0 CATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGT 700 consensus_5296#1 CATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGT 606 ************************************************************ consensus_5296#0 GTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTC 760 consensus_5296#1 GTTGATTGCTAGCTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTC 666 ************************************************************ consensus_5296#0 CTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATG 820 consensus_5296#1 CTTTGATGCGTATTTGTTCGCTCGCTGGGTAATTGTCACCAGTTTGTGTGTGTTGTAATG 726 ************************************************************ consensus_5296#0 TCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATCCAGGT 880 consensus_5296#1 TCTTGTTTTAGTTTCACTGTTTCGGATTCAAATTTAAGATGGAACCTGAACAATC----- 781 ******************************************************* consensus_5296#0 TTTTGAAAAAAAA 893 consensus_5296#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||