cluster # 5297

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Oryza sativa
cluster # 5297 cluster # 5297 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5297#0 length = 780 sequences # 1

consensus_5297#1 length = 472 sequences # 1
consensus_5297#2 length = 250 sequences # 1

consensusID : consensus_5297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 780
fasta sequence

                              [GCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCTCCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCGCCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCGGCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCATCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATCCCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCACCTGGGGCGACACCGTCTCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGATGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAGCAAAACGAACCAAATCGGTGGCAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTTCAAATTGAGTTTTGAATTTGTAGCTGAAAATAGTATTTGTGTTGCAATTGATGGTGCGAATAAAAACTGTCCTCGAGCAGCAG]

[+] EMBL AK108910             [GCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCTCCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCGCCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCGGCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCATCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATCCCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCGCCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCACCTGGGGCGACACCGTCTCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGATGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAGCAAAACGAACCAAATCGGTGGCAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTTCAAATTGAGTTTTGAATTTGTAGCTGAAAATAGTATTTGTGTTGCAATTGATGGTGCGAATAAAAACTGTCCTCGAGCAGCAG]




>consensus_5297#0
GCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCT
CCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCG
CCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCG
GCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCA
TCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATC
CCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCG
CCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCA
CCTGGGGCGACACCGTCTCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCC
GTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGAT
GAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGAT
CACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAGCAAAACGAACCAAATCGGTGGCAA
ATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTTCAAATTGAGTTTTGAATTTGTAG
CTGAAAATAGTATTTGTGTTGCAATTGATGGTGCGAATAAAAACTGTCCTCGAGCAGCAG

consensusID : consensus_5297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [CGGCGACGGCGAGAACGGCGAGGCACTGCTGCTGTGGGAGTCCCGCGGAGGCGCTCGTCGACGGCGGCGGCGAGGACGCGGGGAGCAACGTGCGCGCGTTCATGGACCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGACGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAGCAAAACGAACCAAATCGGTGGCAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTTCAAATTGAGTTTTGAATTTGTAGCTGAAAATAGTATTTGTGTTGCAATTGATGGTGCGAATAAAAACTGTCCTCGAGCAGCAGCGACAACTTGACATGCAGAAAAA]

[+] EMBL BI813262             [CGGCGACGGCGAGAACGGCGAGGCACTGCTGCTGTGGGAGTCCCGCGGAGGCGCTCGTCGACGGCGGCGGCGAGGACGCGGGGAGCAACGTGCGCGCGTTCATGGACCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGACGAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAGCAAAACGAACCAAATCGGTGGCAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTTCAAATTGAGTTTTGAATTTGTAGCTGAAAATAGTATTTGTGTTGCAATTGATGGTGCGAATAAAAACTGTCCTCGAGCAGCAGCGACAACTTGACATGCAGAAAAA]




>consensus_5297#1
CGGCGACGGCGAGAACGGCGAGGCACTGCTGCTGTGGGAGTCCCGCGGAGGCGCTCGTCG
ACGGCGGCGGCGAGGACGCGGGGAGCAACGTGCGCGCGTTCATGGACCCGCGGCTTGGCG
GCGACTACCCGCTCGACCTGGCCATGGCCGTGGCGTCGCTGGCGGCGCGGTGCGTGGCGA
GGCAGCCCGCCGCGCGGCCGGCCATGGACGAGGTGTTCGTCTCGCTCGCGGCGGTGTACG
GCTCCACGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGA
GGTAGCAAAACGAACCAAATCGGTGGCAAATTCGATTCAAATCGATGCGAAAAGATCGGA
ATTTTTCAAATTGAGTTTTGAATTTGTAGCTGAAAATAGTATTTGTGTTGCAATTGATGG
TGCGAATAAAAACTGTCCTCGAGCAGCAGCGACAACTTGACATGCAGAAAAA

consensusID : consensus_5297#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [CCGGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACCGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTTACCCAAACCGAACCAAATCGGTGCCAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTCTCAAATTGAGTTTGAATTTGTAGCTGAAAATAGTATTTGGTGTGCCCAATTGATGGGTGGCGAATNCANCCGGTCCCTNGACGCAGCAGCGA]

[+] EMBL BM419290             [CCGGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACCGGTGGACTGGAACCCCTCGGATCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTTACCCAAACCGAACCAAATCGGTGCCAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTCTCAAATTGAGTTTGAATTTGTAGCTGAAAATAGTATTTGGTGTGCCCAATTGATGGGTGGCGAATNCANCCGGTCCCTNGACGCAGCAGCGA]




>consensus_5297#2
CCGGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACCGGTGGACTGGAACCCCTCGGATC
ACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTTACCCAAACCGAACCAAATCGGTGCCA
AATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTCTCAAATTGAGTTTGAATTTGTA
GCTGAAAATAGTATTTGGTGTGCCCAATTGATGGGTGGCGAATNCANCCGGTCCCTNGAC
GCAGCAGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5297#1      ------------------------------------------------------------
consensus_5297#2      ------------------------------------------------------------
consensus_5297#0      GCGACGCGTACCTGGTGTTCCGCTCCTCCCCGCCCCTCTACGCCTCCGCTGTCTCCATCT 60
                                                                                  

consensus_5297#1      ------------------------------------------------------------
consensus_5297#2      ------------------------------------------------------------
consensus_5297#0      CCTACCTCCTCAACGTCGCCGCCGCCGCCGTCGCCGACTCCAACGCCGTCGACCCGGTCG 120
                                                                                  

consensus_5297#1      ------------------------------------------------------------
consensus_5297#2      ------------------------------------------------------------
consensus_5297#0      CCCCCGTCGCCGCCGACCGCCTCGTGCTCGCGCCCGTGCCGTGCGGCTGCTCCCCGGGCG 180
                                                                                  

consensus_5297#1      ------------------------------------------------------------
consensus_5297#2      ------------------------------------------------------------
consensus_5297#0      GCTACTACCAGCACAACGCCTCCCACACCATCCGCGACACCGGCGTCGAGACCTACTTCA 240
                                                                                  

consensus_5297#1      ------------------------------------------------------------
consensus_5297#2      ------------------------------------------------------------
consensus_5297#0      TCATCGCCAACCTCACCTACCAGGGCCTCTCGACGTGCCAGGCTCTCATCGCGCAGAATC 300
                                                                                  

consensus_5297#1      ----------------------CGGCGACGGCGAGAACGGCGAGGCACTGCT--GCTGTG 36
consensus_5297#2      ------------------------------------------------------------
consensus_5297#0      CCCTCCACGACAGCCGCGGCCTCGTCGCCGGCGACAACCTCACCGTCCCGCTCCGCTGCG 360
                                                                                  

consensus_5297#1      GGAGTCCCGCGGAGGCGCTCGTCGACGGCGGCGGCGAGGACGCGGGGAGCAACGTGCGCG 96
consensus_5297#2      ------------------------------------------------------------
consensus_5297#0      CCTGCCCCTCGCCGCCGCAGGCCGCCGCGGGCGTCAAGCACATGGTCACCTACCTCGTCA 420
                                                                                  

consensus_5297#1      CGTTCATGGAC-------CCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCC 149
consensus_5297#2      ------------------------------------------------------------
consensus_5297#0      CCTGGGGCGACACCGTCTCCGCGGCTTGGCGGCGACTACCCGCTCGACCTGGCCATGGCC 480
                                                                                  

consensus_5297#1      GTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGAC 209
consensus_5297#2      ------------------------------------------------------------
consensus_5297#0      GTGGCGTCGCTGGCGGCGCGGTGCGTGGCGAGGCAGCCCGCCGCGCGGCCGGCCATGGAT 540
                                                                                  

consensus_5297#1      GAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCAC-GGTGGACTGGAACCCCTCGGA 268
consensus_5297#2      --CCGGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCACCGGTGGACTGGAACCCCTCGGA 58
consensus_5297#0      GAGGTGTTCGTCTCGCTCGCGGCGGTGTACGGCTCCAC-GGTGGACTGGAACCCCTCGGA 599
                           ********************************* *********************

consensus_5297#1      TCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAG--CAAAACGAACCAAATCGGTGG 326
consensus_5297#2      TCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTTACCCAAACCGAACCAAATCGGTGC 118
consensus_5297#0      TCACGGCAACTCCGGGTCGTCGCTGATTGGGAGGTAG--CAAAACGAACCAAATCGGTGG 657
                      ***********************************    **** *************** 

consensus_5297#1      CAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTT-TCAAATTGAGTTTTGAATTT 385
consensus_5297#2      CAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTTCTCAAATTGAGTTT-GAATTT 177
consensus_5297#0      CAAATTCGATTCAAATCGATGCGAAAAGATCGGAATTTT-TCAAATTGAGTTTTGAATTT 716
                      *************************************** ************* ******

consensus_5297#1      GTAGCTGAAAATAGTATTTGTGTTG--CAATTGATGG--TGCGAATAAAAACTGTCCTCG 441
consensus_5297#2      GTAGCTGAAAATAGTATTTGGTGTGCCCAATTGATGGGTGGCGAATNCANCCGGTCCCTN 237
consensus_5297#0      GTAGCTGAAAATAGTATTTGTGTTG--CAATTGATGG--TGCGAATAAAAACTGTCCTCG 772
                      ********************   **  **********   ******  *  * ****   

consensus_5297#1      AGCAGCAGCGACAACTTGACATGCAGAAAAA 472
consensus_5297#2      GAC-GCAGCAGCGA----------------- 250
consensus_5297#0      AGCAGCAG----------------------- 780
                        * ****