cluster # 53

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Oryza sativa
cluster # 53 cluster # 53 Sequences # 2 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_53#0 length = 948 sequences # 2

consensusID : consensus_53#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 948
fasta sequence

                              [TGAATGATCCCTTCTCACTTCCAAGTACTCCACGAATGTAACAACTTGATGTGACCTCAGTTCTTCTCCCATCTCCTCTTCTCCCCACCACGCGCGCGCCGCCCTGCCCAGATGTTTCTCCACTCCCTCTTGATGCAAAACATGGCCAAGAACACAACAACGCAGCAGCAGCAGCAGACGAGGTCGTCGAAAGAGGCGGGCGGCGGCGGCGCGGCGAGGTCGAGAGGGGTGTCGTCGAAGAAGTCGCCGTGGTACCAGCGGGCGGTTGAGGTGTTGCTGCTGATATGGAAGCAGCCGACGGGGGCGGGGACGGGGACGACGACGAAGGCCGCGGCGGCGTC-GGGG--ATGGGGGCTCGGCTGCGGAAGTCGTCGTCGCTGAACGTGGCGGCGTCGTTCACGCGGGTCTGCCTGTGCGCGCCTATCTCGTCGTACAATGAGCAGGCGCTCTACTTCCAGGCGGGCGACGTGGCGCCGCGCCGGAGCTACAGCTACCCGCGGGCGTCGTCGGCGTCGGCGTCCGGGTGCAGCGGAGGCGGAAACAGCAACCCGCTGGTGGCGCCGCCGCCCGCGGCCGAGCAGAGGGCGCTGATGAGGACGCCTGGCCCCGGCGGGGAGAGCGCGAGGCGGCCGGTGTTCCGCGGCAAGTCGCTGACGGACGACATCCTGATGCGGCGGTTCGTCGTCGACGAGGAGGCCACGCGGCGGCGCAACGAGATGGAGGTGATCCGGCGCCGCCACGCGGCCGCCGCCAAGCGGCGGCGCCTCGGCCCCAGCCCGCTCCGCCGGATGGCCCTGGCGGAATCGGAGTCGGAGGCCGACGACGAGGAGGAGACGACGACGACGGAAGCAGCCGAGCCGACGTCACGGAGGAAACCCCAAGCCGTACCCATCGCAGCGTAACAGCGAAGCCTCCCTGCTTGTCCCTGTCTCCCCTCTCAATTTTTTTTC]

[+] EMBL AK061559             [TGAATGATCCCTTCTCACTTCCAAGTACTCCACGAATGTAACAACTTGATGTGACCTCAGTTCTTCTCCCATCTCCTCTTCTCCCCACCACGCGCGCGCCGCCCTGCCCAGATGTTTCTCCACTCCCTCTTGATGCAAAACATGGCCAAGAACACAACAACGCAGCAGCAGCAGCAGACGAGGTCGTCGAAAGAGGCGGGCGGCGGCGGCGCGGCGAGGTCGAGAGGGGTGTCGTCGAAGAAGTCGCCGTGGTACCAGCGGGCGGTTGAGGTGTTGCTGCTGATATGGAAGCAGCCGACGGGGGCGGGGACGGGGACGACGACGAAGGCCGCGGCGGCGTC GGGG  ATGGGGGCTCGGCTGCGGAAGTCGTCGTCGCTGAACGTGGCGGCGTCGTTCACGCGGGTCTGCCTGTGCGCGCCTATCTCGTCGTACAATGAGCAGGCGCTCTACTTCCAGGCGGGCGACGTGGCGCCGCGCCGGAGCTACAGCTACCCGCGGGCGTCGTCGGCGTCGGCGTCCGGGTGCAGCGGAGGCGGAAACAGCAACCCGCTGGTGGCGCCGCCGCCCGCGGCCGAGCAGAGGGCGCTGATGAGGACGCCTGGCCCCGGCGGGGAGAGCGCGAGGCGGCCGGTGTTCCGCGGCAAGTCGCTGACGGACGACATCCTGATGCGGCGGTTCGTCGTCGACGAGGAGGCCACGCGGCGGCGCAACGAGATGGAGGTGATCCGGCGCCGCCACGCGGCCGCCGCCAAGCGGCGGCGCCTCGGCCCCAGCCCGCTCCGCCGGATGGCCCTGGCGGAATCGGAGTCGGAGGCCGACGACGAGGAGGAGACGACGACGACGGAAGCAGCCGAGCCGACGTCACGGAGGAAACCCCAAGCCGTACCCATCGCAGCGTAACAGCGAAGCCTCCCTGCTTGTCCCTGTCTCCCCTCTCAATTTTTTTTC]
[+] EMBL CA755900             [                                       AACAACTTGATGTGACCTCAGTTCTTCTCCCATCTCCTCTTCTCCCCACCACGCGCGCGCCGCCCTGCCCAGATGTTTCTCCACTCCCTCTTGATGCAAAACATGGCCAAGAACACAACAACGCAGCAGCAGCAGCAGACGAGGTCGTCGAAAGAGGCGGGCGGCGGCGGCGCGGCGAGGTCGAGAGGGGTGTCGTCGAAGAAGTCGCCGTGGTACCAGCGGGCGGTTGAGGTGTTGCTGCTGATATGGAAGCAGCCGACGGGGGCGGGGACGGGGACGACGACNAAGGCCGCGGCGGC TCNGGGGAAATGGGGGCTCGGCTGCGGAAGTCGTCGTCGCTGAACGTGGCGGCGTCGTTCACGCGGGTCTGCCTGTGCGCGCCTATCTCGTCGTACAATGAGCAGGCGCTCTACTTCCAGGCGGGCGACGTGGCGCCGCGCCGGAGCTACAGCTACCCGCGGGCGTCGTCGGCGTCGGCGTCCGGGTGCAGCGGAGGCGGAAACAGCAACCCGCTGGTGGCGCCGCCGCCCGCGGNCGAGCAGAGGGCGCTGATGAGGACGCCTGGCCCCGGCGGGGAGAGCGCGAGGCGGCCGGTGTTCCGCGGCAAGTCGCTGA                                                                                                                                                                                                                                                                                                        ]




>consensus_53#0
TGAATGATCCCTTCTCACTTCCAAGTACTCCACGAATGTAACAACTTGATGTGACCTCAG
TTCTTCTCCCATCTCCTCTTCTCCCCACCACGCGCGCGCCGCCCTGCCCAGATGTTTCTC
CACTCCCTCTTGATGCAAAACATGGCCAAGAACACAACAACGCAGCAGCAGCAGCAGACG
AGGTCGTCGAAAGAGGCGGGCGGCGGCGGCGCGGCGAGGTCGAGAGGGGTGTCGTCGAAG
AAGTCGCCGTGGTACCAGCGGGCGGTTGAGGTGTTGCTGCTGATATGGAAGCAGCCGACG
GGGGCGGGGACGGGGACGACGACGAAGGCCGCGGCGGCGTCGGGGATGGGGGCTCGGCTG
CGGAAGTCGTCGTCGCTGAACGTGGCGGCGTCGTTCACGCGGGTCTGCCTGTGCGCGCCT
ATCTCGTCGTACAATGAGCAGGCGCTCTACTTCCAGGCGGGCGACGTGGCGCCGCGCCGG
AGCTACAGCTACCCGCGGGCGTCGTCGGCGTCGGCGTCCGGGTGCAGCGGAGGCGGAAAC
AGCAACCCGCTGGTGGCGCCGCCGCCCGCGGCCGAGCAGAGGGCGCTGATGAGGACGCCT
GGCCCCGGCGGGGAGAGCGCGAGGCGGCCGGTGTTCCGCGGCAAGTCGCTGACGGACGAC
ATCCTGATGCGGCGGTTCGTCGTCGACGAGGAGGCCACGCGGCGGCGCAACGAGATGGAG
GTGATCCGGCGCCGCCACGCGGCCGCCGCCAAGCGGCGGCGCCTCGGCCCCAGCCCGCTC
CGCCGGATGGCCCTGGCGGAATCGGAGTCGGAGGCCGACGACGAGGAGGAGACGACGACG
ACGGAAGCAGCCGAGCCGACGTCACGGAGGAAACCCCAAGCCGTACCCATCGCAGCGTAA
CAGCGAAGCCTCCCTGCTTGTCCCTGTCTCCCCTCTCAATTTTTTTTC

clustalw multiple alignements is not computed in this case