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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 530 cluster # 530       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_530#0 length = 806 sequences # 1  
consensus_530#1 length = 560 sequences # 1  

consensusID : consensus_530#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 806
fasta sequence
                              [ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTTTCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCATGTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAATATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGAAGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGGCAGGTATACATTCCGTTCCTCTTCTTCTATACATTGTATTGTACATAGAAAGAAATAACATGCATGCTTAGTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGTTCAAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCTTTGTTGCCCAGTGAATATATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCACCGCTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTACAAAACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAACCTTAAGAATAACAGAATCATCAAAGCAAT]

[+] EMBL CB629986             [ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTTTCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCATGTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAATATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGAAGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGGCAGGTATACATTCCGTTCCTCTTCTTCTATACATTGTATTGTACATAGAAAGAAATAACATGCATGCTTAGTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGTTCAAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCTTTGTTGCCCAGTGAATATATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCACCGCTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTACAAAACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAACCTTAAGAATAACAGAATCATCAAAGCAAT]


>consensus_530#0 ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTT TCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCAT GTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAAT ATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTA GTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAAT ATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGA AGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGG CAGGTATACATTCCGTTCCTCTTCTTCTATACATTGTATTGTACATAGAAAGAAATAACA TGCATGCTTAGTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGTTC AAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCTTT GTTGCCCAGTGAATATATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCACCG CTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTACAAA ACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAACCTT AAGAATAACAGAATCATCAAAGCAAT



consensusID : consensus_530#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence
                              [TGATAGAATGACTTACATTGTGAAACGGAGGAAGTATAATATATGTAAATTACTTTTAGGCTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATATTGTTGCAAAGATTTAATTATTACGAACACAACGGTGTAATCGGATTGTAAATCGGATGAGTAATTTAAGAGAAAATTTTATTTGAAGCATAGATGATAGGAATATTTCCCATACTTACTTAATGGATTAGGACTATAATAAAGTAAGATTCTTCAAGCTAACACATATCTGGATTCTAGATAGGCGTCGCTAGTTATGACTAAATCGAGAGTGCTCTCGAATTAGATTTTGCGTTTTCTTTTGGTTGACCTCATTAGTTTTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGTGTGTTTTTGTCTCTGTTAAGAAAATCATGGAAATGTCATGCTTATGTCTAAGAGCCATCAAACATCATGAATTATTAAACTTTTT]

[+] EMBL CA998365             [TGATAGAATGACTTACATTGTGAAACGGAGGAAGTATAATATATGTAAATTACTTTTAGGCTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATATTGTTGCAAAGATTTAATTATTACGAACACAACGGTGTAATCGGATTGTAAATCGGATGAGTAATTTAAGAGAAAATTTTATTTGAAGCATAGATGATAGGAATATTTCCCATACTTACTTAATGGATTAGGACTATAATAAAGTAAGATTCTTCAAGCTAACACATATCTGGATTCTAGATAGGCGTCGCTAGTTATGACTAAATCGAGAGTGCTCTCGAATTAGATTTTGCGTTTTCTTTTGGTTGACCTCATTAGTTTTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGTGTGTTTTTGTCTCTGTTAAGAAAATCATGGAAATGTCATGCTTATGTCTAAGAGCCATCAAACATCATGAATTATTAAACTTTTT]


>consensus_530#1 TGATAGAATGACTTACATTGTGAAACGGAGGAAGTATAATATATGTAAATTACTTTTAGG CTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTT AGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATATTGT TGCAAAGATTTAATTATTACGAACACAACGGTGTAATCGGATTGTAAATCGGATGAGTAA TTTAAGAGAAAATTTTATTTGAAGCATAGATGATAGGAATATTTCCCATACTTACTTAAT GGATTAGGACTATAATAAAGTAAGATTCTTCAAGCTAACACATATCTGGATTCTAGATAG GCGTCGCTAGTTATGACTAAATCGAGAGTGCTCTCGAATTAGATTTTGCGTTTTCTTTTG GTTGACCTCATTAGTTTTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGTGTGTT TTTGTCTCTGTTAAGAAAATCATGGAAATGTCATGCTTATGTCTAAGAGCCATCAAACAT CATGAATTATTAAACTTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_530#0      ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTT 60
consensus_530#1      ------------------------------------------------------------
                                                                                 

consensus_530#0      TCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCAT 120
consensus_530#1      ------------------------------------------------------------
                                                                                 

consensus_530#0      GTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAAT 180
consensus_530#1      -------------------TGATAGAATGACTTACATT-GTGAAACGGAGGAAGTATAAT 40
                                           ** * * **** * ** **   * *       ******

consensus_530#0      ATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTA 240
consensus_530#1      ATATGTAAATTACTTTTAGGCTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTA 100
                     ************  ********** ** ********************************

consensus_530#0      GTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAAT 300
consensus_530#1      GTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAAT 160
                     **************************** ***** *************************

consensus_530#0      ATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGA 360
consensus_530#1      ATAATCATGTGAGATATTGTTGCAAAGATTTAATTATTACGAACACAACG-GTGTAATCG 219
                     *************** *****  ***************** *   ***    * * *   

consensus_530#0      AGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGG 420
consensus_530#1      GATTGTAAATCGGATGA------GTAATTTAAGAGAAAATTTTATTTGAAGCATAGATGA 273
                        *  **  *     *       ***   *   * ***    *   * * *  ** ** 

consensus_530#0      CAGGTATACATTCCGTTCCTCTTCTTCTATACATT-GTATTGTACATAGAAAGAAATAAC 479
consensus_530#1      TAGGAATATTTCCCATA---CTTACTTAATGGATTAGGACTATA---ATAAAGTAAGATT 327
                      *** ***  * ** *    ***  *  **  *** * * * **   * **** ** *  

consensus_530#0      ATGCATGCTTA-GTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGT 538
consensus_530#1      CTTCAAGCTAACACATATCTGG-ATTCTAGATAGGCGTCGCTAGTTATGACTA-----AA 381
                      * ** *** *   ** *****     *** ***      *  * *    ***       

consensus_530#0      TCAAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCT 598
consensus_530#1      TCGAGAG-----TGCTCTCGAATTAGATTTTGCGTTTTCTTTTGGTTGACCTCATTAGTT 436
                     ** ****     *  * *  *   ** ** **    *   *         *  **  * *

consensus_530#0      TTGTTGCCCAGTGAATA-TATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCA 657
consensus_530#1      TTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGT-GTGTTTTTG--TCTCTGTTA 493
                     ** ** * *  * * ** ** ***    *  *  *****     * ***  ** * *  *

consensus_530#0      CCGCTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTAC 717
consensus_530#1      AGAAAATCATGGAAATGTCATGCTTATGTCTAAGA-GCCATCAAAC--ATCATGAATTAT 550
                           **       * *  *  *    * **  *  * *** ***  **  *   *** 

consensus_530#0      AAAACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAAC 777
consensus_530#1      TAAACTTTTT-------------------------------------------------- 560
                      **** ** *                                                  

consensus_530#0      CTTAAGAATAACAGAATCATCAAAGCAAT 806
consensus_530#1      -----------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)