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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTTTCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCATGTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAATATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGAAGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGGCAGGTATACATTCCGTTCCTCTTCTTCTATACATTGTATTGTACATAGAAAGAAATAACATGCATGCTTAGTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGTTCAAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCTTTGTTGCCCAGTGAATATATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCACCGCTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTACAAAACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAACCTTAAGAATAACAGAATCATCAAAGCAAT]
[+] EMBL CB629986 [ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTTTCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCATGTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAATATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGAAGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGGCAGGTATACATTCCGTTCCTCTTCTTCTATACATTGTATTGTACATAGAAAGAAATAACATGCATGCTTAGTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGTTCAAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCTTTGTTGCCCAGTGAATATATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCACCGCTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTACAAAACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAACCTTAAGAATAACAGAATCATCAAAGCAAT]
consensusID : consensus_530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence
[TGATAGAATGACTTACATTGTGAAACGGAGGAAGTATAATATATGTAAATTACTTTTAGGCTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATATTGTTGCAAAGATTTAATTATTACGAACACAACGGTGTAATCGGATTGTAAATCGGATGAGTAATTTAAGAGAAAATTTTATTTGAAGCATAGATGATAGGAATATTTCCCATACTTACTTAATGGATTAGGACTATAATAAAGTAAGATTCTTCAAGCTAACACATATCTGGATTCTAGATAGGCGTCGCTAGTTATGACTAAATCGAGAGTGCTCTCGAATTAGATTTTGCGTTTTCTTTTGGTTGACCTCATTAGTTTTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGTGTGTTTTTGTCTCTGTTAAGAAAATCATGGAAATGTCATGCTTATGTCTAAGAGCCATCAAACATCATGAATTATTAAACTTTTT]
[+] EMBL CA998365 [TGATAGAATGACTTACATTGTGAAACGGAGGAAGTATAATATATGTAAATTACTTTTAGGCTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATATTGTTGCAAAGATTTAATTATTACGAACACAACGGTGTAATCGGATTGTAAATCGGATGAGTAATTTAAGAGAAAATTTTATTTGAAGCATAGATGATAGGAATATTTCCCATACTTACTTAATGGATTAGGACTATAATAAAGTAAGATTCTTCAAGCTAACACATATCTGGATTCTAGATAGGCGTCGCTAGTTATGACTAAATCGAGAGTGCTCTCGAATTAGATTTTGCGTTTTCTTTTGGTTGACCTCATTAGTTTTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGTGTGTTTTTGTCTCTGTTAAGAAAATCATGGAAATGTCATGCTTATGTCTAAGAGCCATCAAACATCATGAATTATTAAACTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_530#0 ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTT 60
consensus_530#1 ------------------------------------------------------------
consensus_530#0 TCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCAT 120
consensus_530#1 ------------------------------------------------------------
consensus_530#0 GTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAAT 180
consensus_530#1 -------------------TGATAGAATGACTTACATT-GTGAAACGGAGGAAGTATAAT 40
** * * **** * ** ** * * ******
consensus_530#0 ATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTA 240
consensus_530#1 ATATGTAAATTACTTTTAGGCTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTA 100
************ ********** ** ********************************
consensus_530#0 GTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAAT 300
consensus_530#1 GTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAAT 160
**************************** ***** *************************
consensus_530#0 ATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGA 360
consensus_530#1 ATAATCATGTGAGATATTGTTGCAAAGATTTAATTATTACGAACACAACG-GTGTAATCG 219
*************** ***** ***************** * *** * * *
consensus_530#0 AGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGG 420
consensus_530#1 GATTGTAAATCGGATGA------GTAATTTAAGAGAAAATTTTATTTGAAGCATAGATGA 273
* ** * * *** * * *** * * * * ** **
consensus_530#0 CAGGTATACATTCCGTTCCTCTTCTTCTATACATT-GTATTGTACATAGAAAGAAATAAC 479
consensus_530#1 TAGGAATATTTCCCATA---CTTACTTAATGGATTAGGACTATA---ATAAAGTAAGATT 327
*** *** * ** * *** * ** *** * * * ** * **** ** *
consensus_530#0 ATGCATGCTTA-GTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGT 538
consensus_530#1 CTTCAAGCTAACACATATCTGG-ATTCTAGATAGGCGTCGCTAGTTATGACTA-----AA 381
* ** *** * ** ***** *** *** * * * ***
consensus_530#0 TCAAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCT 598
consensus_530#1 TCGAGAG-----TGCTCTCGAATTAGATTTTGCGTTTTCTTTTGGTTGACCTCATTAGTT 436
** **** * * * * ** ** ** * * * ** * *
consensus_530#0 TTGTTGCCCAGTGAATA-TATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCA 657
consensus_530#1 TTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGT-GTGTTTTTG--TCTCTGTTA 493
** ** * * * * ** ** *** * * ***** * *** ** * * *
consensus_530#0 CCGCTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTAC 717
consensus_530#1 AGAAAATCATGGAAATGTCATGCTTATGTCTAAGA-GCCATCAAAC--ATCATGAATTAT 550
** * * * * * ** * * *** *** ** * ***
consensus_530#0 AAAACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAAC 777
consensus_530#1 TAAACTTTTT-------------------------------------------------- 560
**** ** *
consensus_530#0 CTTAAGAATAACAGAATCATCAAAGCAAT 806
consensus_530#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||