These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTTTCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCATGTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAATATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGAAGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGGCAGGTATACATTCCGTTCCTCTTCTTCTATACATTGTATTGTACATAGAAAGAAATAACATGCATGCTTAGTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGTTCAAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCTTTGTTGCCCAGTGAATATATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCACCGCTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTACAAAACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAACCTTAAGAATAACAGAATCATCAAAGCAAT] [+] EMBL CB629986 [ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTTTCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCATGTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAATATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGAAGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGGCAGGTATACATTCCGTTCCTCTTCTTCTATACATTGTATTGTACATAGAAAGAAATAACATGCATGCTTAGTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGTTCAAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCTTTGTTGCCCAGTGAATATATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCACCGCTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTACAAAACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAACCTTAAGAATAACAGAATCATCAAAGCAAT] consensusID : consensus_530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [TGATAGAATGACTTACATTGTGAAACGGAGGAAGTATAATATATGTAAATTACTTTTAGGCTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATATTGTTGCAAAGATTTAATTATTACGAACACAACGGTGTAATCGGATTGTAAATCGGATGAGTAATTTAAGAGAAAATTTTATTTGAAGCATAGATGATAGGAATATTTCCCATACTTACTTAATGGATTAGGACTATAATAAAGTAAGATTCTTCAAGCTAACACATATCTGGATTCTAGATAGGCGTCGCTAGTTATGACTAAATCGAGAGTGCTCTCGAATTAGATTTTGCGTTTTCTTTTGGTTGACCTCATTAGTTTTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGTGTGTTTTTGTCTCTGTTAAGAAAATCATGGAAATGTCATGCTTATGTCTAAGAGCCATCAAACATCATGAATTATTAAACTTTTT] [+] EMBL CA998365 [TGATAGAATGACTTACATTGTGAAACGGAGGAAGTATAATATATGTAAATTACTTTTAGGCTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTAGTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAATATAATCATGTGAGATATTGTTGCAAAGATTTAATTATTACGAACACAACGGTGTAATCGGATTGTAAATCGGATGAGTAATTTAAGAGAAAATTTTATTTGAAGCATAGATGATAGGAATATTTCCCATACTTACTTAATGGATTAGGACTATAATAAAGTAAGATTCTTCAAGCTAACACATATCTGGATTCTAGATAGGCGTCGCTAGTTATGACTAAATCGAGAGTGCTCTCGAATTAGATTTTGCGTTTTCTTTTGGTTGACCTCATTAGTTTTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGTGTGTTTTTGTCTCTGTTAAGAAAATCATGGAAATGTCATGCTTATGTCTAAGAGCCATCAAACATCATGAATTATTAAACTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_530#0 ATTTTAACAGTAAGTTCAATGTTAACTTCAACACACATAAGATACATACTATTGCATTTT 60 consensus_530#1 ------------------------------------------------------------ consensus_530#0 TCAAATTGAAAGGAGACACTCGATGGAGTATAAACCAGCTACGACTAGCTGTGTAGTCAT 120 consensus_530#1 ------------------------------------------------------------ consensus_530#0 GTCCAATGAAAAATGCATGCATTAAAGTTACTTTCTTTTGTTCTAAGTTACTTCTATAAT 180 consensus_530#1 -------------------TGATAGAATGACTTACATT-GTGAAACGGAGGAAGTATAAT 40 ** * * **** * ** ** * * ****** consensus_530#0 ATATGTAAATTATCTTTAGGCTTTGCTGAATTTACTTTTATATGTCTAAGAAGTAACTTA 240 consensus_530#1 ATATGTAAATTACTTTTAGGCTTTACTAAATTTACTTTTATATGTCTAAGAAGTAACTTA 100 ************ ********** ** ******************************** consensus_530#0 GTGAAATCTAAAAGTAATTTAGACATATTATAAATGTAATTTGTGATTTTTCATCAAAAT 300 consensus_530#1 GTGAAATCTAAAAGTAATTTAGACATATCATAAAAGTAATTTGTGATTTTTCATCAAAAT 160 **************************** ***** ************************* consensus_530#0 ATAATCATGTGAGATCTTGTTATAAAGATTTAATTATTACTAGATCAATATATATGAAGA 360 consensus_530#1 ATAATCATGTGAGATATTGTTGCAAAGATTTAATTATTACGAACACAACG-GTGTAATCG 219 *************** ***** ***************** * *** * * * consensus_530#0 AGCTAAAATGCAATCAATTTGTCATAACAAACAGGCAAAAGGAAAAGGGATCTCAGTTGG 420 consensus_530#1 GATTGTAAATCGGATGA------GTAATTTAAGAGAAAATTTTATTTGAAGCATAGATGA 273 * ** * * *** * * *** * * * * ** ** consensus_530#0 CAGGTATACATTCCGTTCCTCTTCTTCTATACATT-GTATTGTACATAGAAAGAAATAAC 479 consensus_530#1 TAGGAATATTTCCCATA---CTTACTTAATGGATTAGGACTATA---ATAAAGTAAGATT 327 *** *** * ** * *** * ** *** * * * ** * **** ** * consensus_530#0 ATGCATGCTTA-GTATTTCTGGTGACATAGGTAGTTAGAACATGCTGGAGCTACCGACGT 538 consensus_530#1 CTTCAAGCTAACACATATCTGG-ATTCTAGATAGGCGTCGCTAGTTATGACTA-----AA 381 * ** *** * ** ***** *** *** * * * *** consensus_530#0 TCAAGAGACCCTTTTTTTTTATCAAGCTTCTGTAAATAACTGCACAAAGTCGTATCTGCT 598 consensus_530#1 TCGAGAG-----TGCTCTCGAATTAGATTTTGCGTTTTCTTTTGGTTGACCTCATTAGTT 436 ** **** * * * * ** ** ** * * * ** * * consensus_530#0 TTGTTGCCCAGTGAATA-TATCTACAAGTCTTAGCAAGTCACAGTCTTGAATCCCAGCCA 657 consensus_530#1 TTTTTTCTCTTTTAGTACTAACTATGGTTTATGACAAGT-GTGTTTTTG--TCTCTGTTA 493 ** ** * * * * ** ** *** * * ***** * *** ** * * * consensus_530#0 CCGCTTTCTCCTTTTTATTGTCATGTGATTTACTATACTATCCAACTTATTTTTCCTTAC 717 consensus_530#1 AGAAAATCATGGAAATGTCATGCTTATGTCTAAGA-GCCATCAAAC--ATCATGAATTAT 550 ** * * * * * ** * * *** *** ** * *** consensus_530#0 AAAACATTCTTAATGCATGGAAGTTATATCAGCAATATGCACACATTTAATTTAAGGAAC 777 consensus_530#1 TAAACTTTTT-------------------------------------------------- 560 **** ** * consensus_530#0 CTTAAGAATAACAGAATCATCAAAGCAAT 806 consensus_530#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||