|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 763 fasta sequence
[CACCTCCCAATCTCCTCTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGACGCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGGGGGCTGGGCCGCGTGCGGCGAATGGCGACGGCGACATCGGGGGCGGTGCCGCGTAGGGCGGATGGCGACGGCGGTTGCTCGGCGGCGCGAGGCGACGACTTGCGGCTTGCGGCGACGAGCGTAACCGGCCGCGCCGCCGTCGGGGCGGCCGGGTCACGGCGACGGCCAGCGCGAGGCGACGTCGTGTGGGTGCGGCGGACGGCAACGCCGGCCTCGGGGCGGCCGGATCCGGGGTTGGCGGCCCTGGAGCCGCGGGATCCGACGTCGTGAGGCGACGACGACGGAGGGGGCTCGGCGGCGCGAGGGGACGGCGTGCGGCGGACGGCGACGAGCGGATCCGGCGTGCGACGTGCGACGGCAACGGCGGGAACTCGGCGGCGCGAAGCGACGGCGTGCGGCGGACGGCGACGAGCTTTTTTCAATGTTTTAATTTGGATTTTTCTGTTTATTATGATTCGGATATCCGGCAAAAACGGTCGGATAGTTTCCGACCGAATCCGAGTTCTGACGGATACCATCGCTACTGTATTTGAATTCGTATCCGAGAAAAACTATCTGAATTCGTATCCGAATCCGAAAATATCTGAAAAAATCCGACCGCAACAATCCGCATCCGAAAAACAGGATCGGAACTCGGAAATTATCC]
[+] EMBL AK111323 [CACCTCCCAATCTCCTCTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGACGCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGGGGGCTGGGCCGCGTGCGGCGAATGGCGACGGCGACATCGGGGGCGGTGCCGCGTAGGGCGGATGGCGACGGCGGTTGCTCGGCGGCGCGAGGCGACGACTTGCGGCTTGCGGCGACGAGCGTAACCGGCCGCGCCGCCGTCGGGGCGGCCGGGTCACGGCGACGGCCAGCGCGAGGCGACGTCGTGTGGGTGCGGCGGACGGCAACGCCGGCCTCGGGGCGGCCGGATCCGGGGTTGGCGGCCCTGGAGCCGCGGGATCCGACGTCGTGAGGCGACGACGACGGAGGGGGCTCGGCGGCGCGAGGGGACGGCGTGCGGCGGACGGCGACGAGCGGATCCGGCGTGCGACGTGCGACGGCAACGGCGGGAACTCGGCGGCGCGAAGCGACGGCGTGCGGCGGACGGCGACGAGCTTTTTTCAATGTTTTAATTTGGATTTTTCTGTTTATTATGATTCGGATATCCGGCAAAAACGGTCGGATAGTTTCCGACCGAATCCGAGTTCTGACGGATACCATCGCTACTGTATTTGAATTCGTATCCGAGAAAAACTATCTGAATTCGTATCCGAATCCGAAAATATCTGAAAAAATCCGACCGCAACAATCCGCATCCGAAAAACAGGATCGGAACTCGGAAATTATCC]
[-] EMBL CF326619 [ GGCCGGGTCACGGCGACGGCCAGCGCGAGGCGACGTCGTGTGGGTGCGGCGGACGGCAACGCCGGCCTCGGGGCGGCCGGATCCGGGGTTGGCGGCCCTGGAGCCGCGGGATCCGACGTCGTGAGGCGACGACGACGGAGGGGGCTCGGCGGCGCGAGGGGACGGCGTGCGGCGGACGGCGACGAGCGGATCCGGCGTGCGACGTGCGACGGCAACGGCGGGAACTCGGCGGCGCGAAGCGACGGCGTGCGGCGGACGGCGACGAGCTTTTTTCAATGTTTTAATAGAAATTTTTCTGTTTATTATGATTCGGATATCCGGCAAAAACGGTCGGATAGTTTCCGACCGAATCCGAGTTCTGACGGATACCATCGCTACTGTATTTGAATTCGTATCCGAGAAAAACTATCCGAATTCGaaaaa ]
consensusID : consensus_5302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGACGCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGNGGGCTGGGCCGCGTGCGCGAATGGCGACGGCGACATCGGGGGCGNTGNCGCGTAGGGCGGATGTCGACGNCGGTTGCTCGNCGGCGCGAGGCGACGACTTGCGGCTTGCGTCGACGAGCGTAACCNTNCGTGTCGNCGTCGGGNCGCCCNTNTCANGGCGACGTCANNNNTANNNACGTCGTGTGGGNTGNGNCGTACNGAAANNNTTCTTTNTGNGCGGCNGNATCGTNGNTTTNNGNTCTTGGAATCTNGNGGATTCTTAAGTTGTNAANNTAAGATGAACGAAGNNTGGTTTTGNGTTGTNAANGGAATTTGTTGNNTGNATNTNATNATTGAATTTTGGTTTTAAGTTTNANNGAAAGTNTNAAATTTGNTNTTAAANNTGTNTTNNTGTTAATNTTANNANTTTTTTAAATNTTTAATTNGANTTTNTTGTTATNATATTTNGTTATNGGAAAAATNTNNGTAATTTNNGNAATNTNTTTTNGATNAATNNTNTTTATTANTTGNTTTGAAAATTTNNATTNTTTGAAAANNATNAATANNAAATTGTN]
[+] EMBL AU069581 [CTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGACGCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGNGGGCTGGGCCGCGTGCGCGAATGGCGACGGCGACATCGGGGGCGNTGNCGCGTAGGGCGGATGTCGACGNCGGTTGCTCGNCGGCGCGAGGCGACGACTTGCGGCTTGCGTCGACGAGCGTAACCNTNCGTGTCGNCGTCGGGNCGCCCNTNTCANGGCGACGTCANNNNTANNNACGTCGTGTGGGNTGNGNCGTACNGAAANNNTTCTTTNTGNGCGGCNGNATCGTNGNTTTNNGNTCTTGGAATCTNGNGGATTCTTAAGTTGTNAANNTAAGATGAACGAAGNNTGGTTTTGNGTTGTNAANGGAATTTGTTGNNTGNATNTNATNATTGAATTTTGGTTTTAAGTTTNANNGAAAGTNTNAAATTTGNTNTTAAANNTGTNTTNNTGTTAATNTTANNANTTTTTTAAATNTTTAATTNGANTTTNTTGTTATNATATTTNGTTATNGGAAAAATNTNNGTAATTTNNGNAATNTNTTTTNGATNAATNNTNTTTATTANTTGNTTTGAAAATTTNNATTNTTTGAAAANNATNAATANNAAATTGTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5302#0 CACCTCCCAATCTCCTCTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGAC 60
consensus_5302#1 ----------------CTCAGCCGCCGCCCTTCCTCCCGGGCTCCCGGCTCCCGCGAGAC 44
********************************************
consensus_5302#0 GCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGGGGG 120
consensus_5302#1 GCCACCACGGGGGCGGGGCCCGCGTGTGGCGGACGGCGACGGCGACGGCGACGACGNGGG 104
******************************************************** ***
consensus_5302#0 CTGGGCCGCGTGCGGCGAATGGCGACGGCGACATCGGGGGCGGTGCCGCGTAGGGCGGAT 180
consensus_5302#1 CTGGGCCGCGTGCG-CGAATGGCGACGGCGACATCGGGGGCGNTGNCGCGTAGGGCGGAT 163
************** *************************** ** **************
consensus_5302#0 GGCGACGGCGGTTGCTCGGCGGCGCGAGGCGACGACTTGCGGCTTGCGGCGACGAGCGTA 240
consensus_5302#1 GTCGACGNCGGTTGCTCGNCGGCGCGAGGCGACGACTTGCGGCTTGCGTCGACGAGCGTA 223
* ***** ********** ***************************** ***********
consensus_5302#0 ACCGGCCGCGCCGCCGTCGGGGCGGCCGGGTCACGGCGACGGCCAGCGCGAGGCGACGTC 300
consensus_5302#1 ACCNTNCGTGTCGNCGTCGGGNCGCCCNTNTCANGGCGACGTC--ANNNNTANNNACGTC 281
*** ** * ** ******* ** ** *** ******* * *****
consensus_5302#0 GTGTGGGT-GCGGCGGACGGCAACGCCGGCCTCGGGGCGGCCGGATCCGGGGTTGGCGGC 359
consensus_5302#1 GTGTGGGNTGNGNCGTACNGAAANNNTTCTTTNTGNGCGGCNGNATCGTNGNTTTNNGNT 341
******* * * ** ** * ** * * ***** * *** * ** *
consensus_5302#0 CCTGGAGCCGCGGGA--TCCGACGTCGTGAGGCGACGACGA-CGGAGGG-GGCTCGGCGG 415
consensus_5302#1 CTTGGAATCTNGNGGATTCTTAAGTTGTNAANNTAAGATGAACGAAGNNTGGTTTTGNGT 401
* **** * * * ** * ** ** * * ** ** ** ** ** * * *
consensus_5302#0 CGCGAGGGGACGGCGTGCGGCGGACGGCGACGAGCGGATCCGGCGTGCGACGTGCGACGG 475
consensus_5302#1 TGTNAANGGAATTTGTTGNNTGNATN-TNATNATTGAATTTTG-GTTTTAAGTTTNANNG 459
* * *** ** * * * * * ** * ** * ** * *
consensus_5302#0 CAACGGCGGGAACTCGGCGGCGCGAAGCGACGGCGTGCGGCGGACGGCGACGAGCTTTTT 535
consensus_5302#1 -AAAGTNTNAAATTTGNT-------NTTAAANNTGTNTTNNTGTTAATNTTANNANTTTT 511
** * ** * * * ** * ****
consensus_5302#0 TCAATGTTTTAATTTGGATTTTTCTGTTTATTATGATTCGGATATCCGGCAAAAACGGTC 595
consensus_5302#1 TTAAATNTTTAATTNGANTTTNTTG--TTATNAT-ATTTNGTTATNGG--AAAAATN--T 564
* ** ******* * *** * **** ** *** * *** * *****
consensus_5302#0 GGATAGTTTCCGACCGAATCCGAGTTCTGACGGATACCATC-GCTACTGTATTTGAA--T 652
consensus_5302#1 NNGTAATTTNNG---NAATNTNT-TTTNGATNAATNNTNTTTATTANTTGNTTTGAAAAT 620
** *** * *** ** ** ** * ** * ****** *
consensus_5302#0 TCGTATCCGAGAAAAACTATCTGAATTCGTATCCGAATCCGAAAATATCTGAAAAAATCC 712
consensus_5302#1 TTNNATTNTTTGAAAANNATN--AATANNAAATTGTN----------------------- 655
* ** **** ** *** * *
consensus_5302#0 GACCGCAACAATCCGCATCCGAAAAACAGGATCGGAACTCGGAAATTATCC 763
consensus_5302#1 ---------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||