These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 815 fasta sequence [GAATTCAGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTTCTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTACAGCTATCTCAGTGGAACATAAAAATTCTAACTAACCCAAACTGCATAAGCCACAAAGAAAGTAGTAAATCCCATGACTACATCAAGATGACTGCGATTTCCATTGTTGTATCGCCACACGCAAGGAATGGTTGGGAATTATGGATAAATATTGGAGCCTTTGTTTTGTGACAGGGGATGTCTTGTGTTTCTTGAGCCAAGCTTTTATTGCCCTGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATTACCTCCTGCAATATTGGGCAGATGAAGTGGCTCGGCACAGCTGCGTTTGGACTTCTTAATGTGGGAGAAGCAGTAATTCTGCTCAGAATGCTCTCGATCTCTGGCAGCACCTCCGATTCAAGGCTAGGCCTGTCTCTACATTTTAAAGCTGTACACCGCACCGCCAATTTTGCCAAGATCTCTGCCTCAGCGATTGGCCAATCAATCTGAGAACTGTCAAGAACATCGGAAATTGAGTCTTTTTTTATCGCTTCTTCTGCACTAAGTATCAGCCCGTGTGGGCGCTTGCCAGTCAGTAGTTGAAGAATGATGATCCCCAGAGCATAAACATCAGATTTCGGACGAATTGTCCCAGTTAACTGGTATTCCGGATCCATGTAATACAGTGTGCCGGCAACTGCAGTATCTCTGTACTCTGTGAGCCCTTCCGGCACAAT] [+] EMBL CB627136 [GAATTCAGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTTCTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTACAGCTATCTCAGTGGAACATAAAAATTCTAACTAACCCAAACTGCATAAGCCACAAAGAAAGTAGTAAATCCCATGACTACATCAAGATGACTGCGATTTCCATTGTTGTATCGCCACACGCAAGGAATGGTTGGGAATTATGGATAAATATTGGAGCCTTTGTTTTGTGACAGGGGATGTCTTGTGTTTCTTGAGCCAAGCTTTTATTGCCCTGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATTACCTCCTGCAATATTGGGCAGATGAAGTGGCTCGGCACAGCTGCGTTTGGACTTCTTAATGTGGGAGAAGCAGTAATTCTGCTCAGAATGCTCTCGATCTCTGGCAGCACCTCCGATTCAAGGCTAGGCCTGTCTCTACATTTTAAAGCTGTACACCGCACCGCCAATTTTGCCAAGATCTCTGCCTCAGCGATTGGCCAATCAATCTGAGAACTGTCAAGAACATCGGAAATTGAGTCTTTTTTTATCGCTTCTTCTGCACTAAGTATCAGCCCGTGTGGGCGCTTGCCAGTCAGTAGTTGAAGAATGATGATCCCCAGAGCATAAACATCAGATTTCGGACGAATTGTCCCAGTTAACTGGTATTCCGGATCCATGTAATACAGTGTGCCGGCAACTGCAGTATCTCTGTACTCTGTGAGCCCTTCCGGCACAAT] [+] EMBL CF568770 [ CCGCCAATTTTGCCAAGATCTCTGCCTCAGCGATTGGCCAATCAATCTGAGAACTGTCAAGAACATCGGAAATTGAGTCTTTTTTTATCGCTTCTTCTGCACTAAGTATCAGCCCGTGTGGGCGCTTGCCAGTCAGTAGTTGAAGAATGATGATCCCCAGAGCATAAACATCAGATTTCGGACGAATTGTCCCAGTTAACTGGTA ] consensusID : consensus_5303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [TGAATTCNGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTTCTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTACAGCTATCTCAGTGGCAACCATCAAAACACATTCTCAACTAACCCAAACGTGCATAAGCCCACAAAGCAAAGTCAGTCAACATCCCATGCACTACATCAAGCATGCACTGCGCATTTCCCATTGCTTGTATCGCCACACGCCAAGGCAATGGTTGGGCAATTATGGATCAAATATTTGGAGCCTTTGTTTTGTGCACAGGGGCATGTCTTGTGTTTACTTGAGCCAAGCTTTAATTCGCCCTGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATATACCTCCTGCAA] [-] EMBL BQ907871 [TGAATTCNGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTTCTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTACAGCTATCTCAGTGGCAACCATCAAAACACATTCTCAACTAACCCAAACGTGCATAAGCCCACAAAGCAAAGTCAGTCAACATCCCATGCACTACATCAAGCATGCACTGCGCATTTCCCATTGCTTGTATCGCCACACGCCAAGGCAATGGTTGGGCAATTATGGATCAAATATTTGGAGCCTTTGTTTTGTGCACAGGGGCATGTCTTGTGTTTACTTGAGCCAAGCTTTAATTCGCCCTGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATATACCTCCTGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5303#0 -GAATTCAGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTT 59 consensus_5303#1 TGAATTCNGCAGCTGTTTTAAGTCTTTGAATAGCAAGAAGCCATGTTAGGCTTTAGGCTT 60 ****** **************************************************** consensus_5303#0 CTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTAC 119 consensus_5303#1 CTCTGAACGTGACCAACCCTTAAGCTAACAAAACCATGTCCCTGTGCTACCATGATGTAC 120 ************************************************************ consensus_5303#0 AGCTATCTCAGTGGAA--CATAAAAA-----TTCTAACTAACCCAAAC-TGCATAAGCC- 170 consensus_5303#1 AGCTATCTCAGTGGCAACCATCAAAACACATTCTCAACTAACCCAAACGTGCATAAGCCC 180 ************** * *** **** * ************* ********** consensus_5303#0 ACAAAG-AAAGT-AGTAAA--TCCCATG-ACTACATCAAG-ATG-ACTGCGA--TTTCCA 221 consensus_5303#1 ACAAAGCAAAGTCAGTCAACATCCCATGCACTACATCAAGCATGCACTGCGCATTTCCCA 240 ****** ***** *** ** ******* *********** *** ****** ** *** consensus_5303#0 TTG-TTGTATCGCCACACGCAAGG--AATGGTTGGG-AATTATGGAT-AAATATT-GGAG 275 consensus_5303#1 TTGCTTGTATCGCCACACGCCAAGGCAATGGTTGGGCAATTATGGATCAAATATTTGGAG 300 *** **************** * * ********** ********** ******* **** consensus_5303#0 CCTTTGTTTTGTG-ACAGGGG-ATGTCTTGTGTTT-CTTGAGCCAAGCTTTTATT-GCCC 331 consensus_5303#1 CCTTTGTTTTGTGCACAGGGGCATGTCTTGTGTTTACTTGAGCCAAGCTTTAATTCGCCC 360 ************* ******* ************* *************** *** **** consensus_5303#0 TGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCAT-TACCTCCTGCAAT 390 consensus_5303#1 TGTGCTCGTAGGTGTGCCCATCAGCAGCAACATAAGGGTCATCCATATACCTCCTGCAA- 419 ********************************************** ************ consensus_5303#0 ATTGGGCAGATGAAGTGGCTCGGCACAGCTGCGTTTGGACTTCTTAATGTGGGAGAAGCA 450 consensus_5303#1 ------------------------------------------------------------ consensus_5303#0 GTAATTCTGCTCAGAATGCTCTCGATCTCTGGCAGCACCTCCGATTCAAGGCTAGGCCTG 510 consensus_5303#1 ------------------------------------------------------------ consensus_5303#0 TCTCTACATTTTAAAGCTGTACACCGCACCGCCAATTTTGCCAAGATCTCTGCCTCAGCG 570 consensus_5303#1 ------------------------------------------------------------ consensus_5303#0 ATTGGCCAATCAATCTGAGAACTGTCAAGAACATCGGAAATTGAGTCTTTTTTTATCGCT 630 consensus_5303#1 ------------------------------------------------------------ consensus_5303#0 TCTTCTGCACTAAGTATCAGCCCGTGTGGGCGCTTGCCAGTCAGTAGTTGAAGAATGATG 690 consensus_5303#1 ------------------------------------------------------------ consensus_5303#0 ATCCCCAGAGCATAAACATCAGATTTCGGACGAATTGTCCCAGTTAACTGGTATTCCGGA 750 consensus_5303#1 ------------------------------------------------------------ consensus_5303#0 TCCATGTAATACAGTGTGCCGGCAACTGCAGTATCTCTGTACTCTGTGAGCCCTTCCGGC 810 consensus_5303#1 ------------------------------------------------------------ consensus_5303#0 ACAAT 815 consensus_5303#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||