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Oryza sativa
cluster # 5307 cluster # 5307       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5307#0 length = 1485 sequences # 3  

consensusID : consensus_5307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1485
fasta sequence
                              [TTGGGAGCTGTTGGCTCTTCTTGCTTTCTTCTTCTTCTTCTTCTTGCAGACGACGAGACGAGATAGAGATTATTTGAGACTCTCTCACACACACACACAAAGAGAAAGAGAGCAGAGAGAGAGAGAGAGAGTGTGTGTGTGTCGTCAATGGCGACGACGTCCAGATAGCATAGCTAGGGTTTCGTTTGCAGGTGGGCCGGGGGAGATGGCCGCCGATTCGAGCACGGCCATGACCTTGTACCAGGGCGTCCCCTTCCACCAGCAGCAGAACCAGATTGAGATAGAGTCCATGCTCTCCTTCCAATCCTCCTCCATCCCCCCACCTCCCACACCCGCCACCATGCTTCTTGCCCCATCCTCCTCTTCCTCCGACTTCCGCAACTACAAGTTCGTCACCTGTTCCCCCGCCGATTGGCCCCACCACGACCTCGCTATCTTGAACGACGGCCTCCTCAGATATGCTCATGAACCCAATATTATCAAGTACACCAAGATTGCCGCAATGCTGCCTACTAGGACTATCAGGGATGTCGCTTTAAGATGCCGATGGACTAAAGACAACGAAAGTAGGCGTGGAAAACTTGACCAAGTCTACACGGGGAAAATGATAAGGGGCTTGAAGGACAACATGGTTTCGTCTACCTTGGCAGCTAATATTCAAATCCAAAATCCAAACAATATGGTACCATTCTCAATATCAATGCATTATCAGGGTCAAAACAGCCTGCTTCATAAGGAAGTCCCTGTTTTAGATAGTGCAACTCAGCATCTTTTGGAGGAAAATAACCAGTTACTAAGCCAGATTGCCGAAAATATCGAAACTTTCAAGACGGTGGAGAATATGGATCTCTTTCTGCGGACGAATAATAATATCAGAACAGTTCTTAAAAGAATGAGTGAGACGCCTGGTATCATGGGTCAGATGCCTCCCTTGCCAGTACCTGTAAATGAAGGCAGCCTGAATACACTTCTCCAAATGGACAGAATGGTTGGTGCCTATGGTATACCATGAAACTCCCATATGGACGCGGGACTGATGTAAAAGATCCTGTTTGGAAAGGGGGAGAGATGTATTGCATAGCATCCTATCGGGGAAGTTGACAGAGAGGAGCCTTTGCCTGATTTGTACTAATGGCATGAAGACAACCAAAGGATGCTAGAGCTTAGACTAACCAAGGTGCCACGGGATAAGTAATGTTTTTTGAGGATTTTCTTTTTCTTTTTCCTTTGAATTGTTTTAGCTGCCGTGTGTCTATCCTTGATTATTGGGGAAGAACATGCCATCAGTCAGGCGGGTATGCGGGTACTTTCTTGGTTGCTGCAAGAAAGTGGAGTACATGCTGCCGCTGCACTTTATTCAATAGAAAGGGAATGTCTGTAAATATTGGGTCAGGTGTGGTGGTGGTTGGTATTCTAAGGCCGCTGTTAATGTAAAAGAACGTCTGTTCTCTCGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK106602             [TTGGGAGCTGTTGGCTCTTCTTGCTTTCTTCTTCTTCTTCTTCTTGCAGACGACGAGACGAGATAGAGATTATTTGAGACTCTCTCACACACACACACAAAGAGAAAGAGAGCAGAGAGAGAGAGAGAGAGTGTGTGTGTGTCGTCAATGGCGACGACGTCCAGATAGCATAGCTAGGGTTTCGTTTGCAGGTGGGCCGGGGGAGATGGCCGCCGATTCGAGCACGGCCATGACCTTGTACCAGGGCGTCCCCTTCCACCAGCAGCAGAACCAGATTGAGATAGAGTCCATGCTCTCCTTCCAATCCTCCTCCATCCCCCCACCTCCCACACCCGCCACCATGCTTCTTGCCCCATCCTCCTCTTCCTCCGACTTCCGCAACTACAAGTTCGTCACCTGTTCCCCCGCCGATTGGCCCCACCACGACCTCGCTATCTTGAACGACGGCCTCCTCAGATATGCTCATGAACCCAATATTATCAAGTACACCAAGATTGCCGCAATGCTGCCTACTAGGACTATCAGGGATGTCGCTTTAAGATGCCGATGGACTAAAGACAACGAAAGTAGGCGTGGAAAACTTGACCAAGTCTACACGGGGAAAATGATAAGGGGCTTGAAGGACAACATGGTTTCGTCTACCTTGGCAGCTAATATTCAAATCCAAAATCCAAACAATATGGTACCATTCTCAATATCAATGCATTATCAGGGTCAAAACAGCCTGCTTCATAAGGAAGTCCCTGTTTTAGATAGTGCAACTCAGCATCTTTTGGAGGAAAATAACCAGTTACTAAGCCAGATTGCCGAAAATATCGAAACTTTCAAGACGGTGGAGAATATGGATCTCTTTCTGCGGACGAATAATAATATCAGAACAGTTCTTAAAAGAATGAGTGAGACGCCTGGTATCATGGGTCAGATGCCTCCCTTGCCAGTACCTGTAAATGAAGGCAGCCTGAATACACTTCTCCAAATGGACAGAATGGTTGGTGCCTATGGTATACCATGAAACTCCCATATGGACGCGGGACTGATGTAAAAGATCCTGTTTGGAAAGGGGGAGAGATGTATTGCATAGCATCCTATCGGGGAAGTTGACAGAGAGGAGCCTTTGCCTGATTTGTACTAATGGCATGAAGACAACCAAAGGATGCTAGAGCTTAGACTAACCAAGGTGCCACGGGATAAGTAATGTTTTTTGAGGATTTTCTTTTTCTTTTTCCTTTGAATTGTTTTAGCTGCCGTGTGTCTATCCTTGATTATTGGGGAAGAACATGCCATCAGTCAGGCGGGTATGCGGGTACTTTCTTGGTTGCTGCAAGAAAGTGGAGTACATGCTGCCGCTGCACTTTATTCAATAGAAAGGGAATGTCTGTAAATATTGGGTCAGGTGTGGTGGTGGTTGGTATTCTAAGGCCGCTGTTAATGTAAAAGAACGTCTGTT                                      ]
[+] EMBL AU070148             [                                     TTCTTCTTGCAGACGACGAGACGAGATAGAGATTATTTGAGACTCTCTCACACACACACACAAAGAGAAAGAGAGCAGAGAGAGAGAGAGAGAGTGTGTGTGTGTCGTCAATGGCGACGACGTCCAGATAGCATAGCTAGGGTTTCGTTTGCAGGTGGGCCGGGGGAGATGGCCGCCGATTCGAGCACGGCCATGACCTTGTACCAGGGCGTCCCCTTCCACCAGCAGCAGAACCAGATTGAGATAGAGTCCATGCTCTCCTTCCAATCCTCCTCCATCCCCCCACCTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU095204             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAATAGAAAGGGAATGTCTGTAAATATTGGGTCAGGTGTGGTGGTGGTTGGTATTNTAAGGCCGCTNTTAATGTAAAAGAACGTCTGTTCTCTCGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_5307#0 TTGGGAGCTGTTGGCTCTTCTTGCTTTCTTCTTCTTCTTCTTCTTGCAGACGACGAGACG AGATAGAGATTATTTGAGACTCTCTCACACACACACACAAAGAGAAAGAGAGCAGAGAGA GAGAGAGAGAGTGTGTGTGTGTCGTCAATGGCGACGACGTCCAGATAGCATAGCTAGGGT TTCGTTTGCAGGTGGGCCGGGGGAGATGGCCGCCGATTCGAGCACGGCCATGACCTTGTA CCAGGGCGTCCCCTTCCACCAGCAGCAGAACCAGATTGAGATAGAGTCCATGCTCTCCTT CCAATCCTCCTCCATCCCCCCACCTCCCACACCCGCCACCATGCTTCTTGCCCCATCCTC CTCTTCCTCCGACTTCCGCAACTACAAGTTCGTCACCTGTTCCCCCGCCGATTGGCCCCA CCACGACCTCGCTATCTTGAACGACGGCCTCCTCAGATATGCTCATGAACCCAATATTAT CAAGTACACCAAGATTGCCGCAATGCTGCCTACTAGGACTATCAGGGATGTCGCTTTAAG ATGCCGATGGACTAAAGACAACGAAAGTAGGCGTGGAAAACTTGACCAAGTCTACACGGG GAAAATGATAAGGGGCTTGAAGGACAACATGGTTTCGTCTACCTTGGCAGCTAATATTCA AATCCAAAATCCAAACAATATGGTACCATTCTCAATATCAATGCATTATCAGGGTCAAAA CAGCCTGCTTCATAAGGAAGTCCCTGTTTTAGATAGTGCAACTCAGCATCTTTTGGAGGA AAATAACCAGTTACTAAGCCAGATTGCCGAAAATATCGAAACTTTCAAGACGGTGGAGAA TATGGATCTCTTTCTGCGGACGAATAATAATATCAGAACAGTTCTTAAAAGAATGAGTGA GACGCCTGGTATCATGGGTCAGATGCCTCCCTTGCCAGTACCTGTAAATGAAGGCAGCCT GAATACACTTCTCCAAATGGACAGAATGGTTGGTGCCTATGGTATACCATGAAACTCCCA TATGGACGCGGGACTGATGTAAAAGATCCTGTTTGGAAAGGGGGAGAGATGTATTGCATA GCATCCTATCGGGGAAGTTGACAGAGAGGAGCCTTTGCCTGATTTGTACTAATGGCATGA AGACAACCAAAGGATGCTAGAGCTTAGACTAACCAAGGTGCCACGGGATAAGTAATGTTT TTTGAGGATTTTCTTTTTCTTTTTCCTTTGAATTGTTTTAGCTGCCGTGTGTCTATCCTT GATTATTGGGGAAGAACATGCCATCAGTCAGGCGGGTATGCGGGTACTTTCTTGGTTGCT GCAAGAAAGTGGAGTACATGCTGCCGCTGCACTTTATTCAATAGAAAGGGAATGTCTGTA AATATTGGGTCAGGTGTGGTGGTGGTTGGTATTCTAAGGCCGCTGTTAATGTAAAAGAAC GTCTGTTCTCTCGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)