cluster # 5308

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Oryza sativa
cluster # 5308 cluster # 5308 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5308#0 length = 819 sequences # 3

consensusID : consensus_5308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 819
fasta sequence

                              [TTTTTTTTTTCAATGCAGATAACGACTCATTAACGCAAAACTCTGCCTGTTGGGCAAAAATCGATCGATACATAAGGGGCTGCGCTGCTCAAATAATGATACAGGAAAAGCTCTTTCTACGATAATGTACACGCTCACGCACCAACAGATGGCCAAAAAAAAAAAA-----ACTATGTTTTTCGTT-TGTGTGTCAGCTCTACATTGCATCGTAACAGGGGGTTGAGGAAACACTCAACACTGTACACCGCACCTTGTTTGTGCCTGGGCAAACGCCAAGAAAATCTTCTCATCGTGTTCAACTGCGAAAGGCATCAGCTGTTTGATGTATGTAGACATGCCCTTTGAATCTTTCAACAACCAAATGCCACTGGCTTGTCATTAACTCTACTGCTGTTTGAGTGAGGGCATCAATTAAAGAACCCATCCCATCCCATACAGTATGAATGTATGTGTGGGAGAGCACCCTGAGGGCATCAACTAAAAGCTTCATGGGCACATTTTTGCCTTGGCTCAGATTCCATCTTTTTGTTCATAGTGGCATAGTGCTTACTGCTTACAACCATGCTCCCCACCCTGGAAACATTTGGCACAACCGGTCCGCATCTACTGCATCCTGTATCAGTTGTTGCACCTGGCCCTGTACACTTCTCATTTCACCATCTTCATATCCATCTAGTTTCTGCTTAACACGGAGGATAGCTCGGGCTGCATCCTTGTTGCCCTCGCAAGCCTCTTGCGAGTCATCCAAGCACGAGTCAATGTCTTCACTTTCCTTTTGACGCTGTAAAGCCTTCAGTGGTGAAAGAGCCCATTTATACAACG]

[-] EMBL BI812128             [TTTTTTTTTTCAATGCAGATAACGACTCATTAACGCAAAACTCTGCCTGTGGGGCAAAAATCGATCGATACATAAGGCGCTGCGCTGCTCAAATAATGATACAGGAAAAACTCTTTCTACGATAATGTACACGCTCACGCACCAACAGATGGCCAAAAAAAAAAAAAAACCACTATGTTTTTCGTTGTGTGTGTCAGCTCTACATGGCATCGTACCAGGGGGTTGAGGAAACACTCAACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB629090             [             TGCAGATAACGACTCATTAACGCAAAACTCTGCCTGTTGGGCAAAAATCGATCGATACATAAGGGGCTGCGCTGCTCAAATAATGATACAGGAAAAGCTCTTTCTACGATAATGTACACGCTCACGCACCAACAGATGGCCAAAAAAAAAAAA     ACTATGTTTTTCGTT TGTGTGTCAGCTCTACATTGCATCGTAACAGGGGGTTGAGGAAACACTCAACACTGTACACCGCACCTTGTTTGTGCCTGGGCAAACGCCAAGAAAATCTTCTCATCGTGTTCAACTGCGAAAGGCATCAGCTGTTTGATGTATGTAGACATGCCCTTTGAATCTTTCAACAACCAAATGCCACTGGCTTGTCATTAACTCTACTGCTGTTTGAGTGAGGGCATCAATTAAAGAACCCATCCCATCCCATACAGTATGAATGTATGTGTGGGAGAGCACCCTGAGGGCATCAACTAAAAGCTTCATGGGCACATTTTTGCCTTGGCTCAGATTCCATCTTTTTGTTCATAGTGGCATAGTGCTTACTGCTTACAACCATGCTCCCCACCCTGGAAACATTTGGCACAACCGGTCCGCATCTACTGCATCCTGTATCAGTTGTTGCACCTGGCCCTGTACACTTCTCATTTCACCATCTTCATATCCATCTAGTTTCTGCTTAACACGGAGGATAGCTCGGGCTGCATCCTTGTTGCCCTCGCAAGCCTCTTGCGAGTCATCCAAGCACGAGTCAATGTCTTCACTTTCCTTTTGACGCTGTAAAGCCTTCAGTGGTGAAAGAGCCCATTTATACAACG]
[+] EMBL CB629160             [             TGCAGATAACGACTCATTAACGCAAAACTCTGCCTGTTGGGCAAAAATCGATCGATACATAAGGGGCTGCGCTGCTCAAATAATGATACAGGAAAAGCTCTTTCTACGATAATGTACACGCTCACGCACCAACAGATGGCCAAAAAAAAAAAA     ACTATGTTTTTCGTT TGTGTGTCAGCTCTACATTGCATCGTAACAGGGGGTTGAGGAAACACTCAACACTGTACACCGCACCTTGTTTGTGCCTGGGCAAACGCCAAGAAAATCTTCTCATCGTGTTCAACTGCGAAAGGCATCAGCTGTTTGATGTATGTAGACATGCCCTTTGAATCTTTCAACAACCAAATGCCACTGTCTTGTCATTAACTCTACTGCTGTTTGAGTGAGGGCATCAATTAAAGAACCCATCCCATCCCATACAGTATGAATGTATGTGTGGGAGAGCACCCTGAGGGCATCAACTAAAAGCTTCATGGGCACATTTTTGCCTTGGCTCAGATTCCATCTTTTTGTTCATAGTGGCATAGTGCTTACTGCTTACAACCATGCTCCCCACCCTGGAAACATTTGGCACAACCGGTCCGCATCTACTGCATCCTGTATCAGTTGTTGCACCTGGCCCTGTACACTTCTCATTTCACCATCTTCATATCCATCTAGTTTCTGCTTAACACGGAGGATAGCTCGGGCTGCATCCTTGTTGCCCTCGCAAGCCTCTTGCGAGTCA                                                                               ]




>consensus_5308#0
TTTTTTTTTTCAATGCAGATAACGACTCATTAACGCAAAACTCTGCCTGTTGGGCAAAAA
TCGATCGATACATAAGGGGCTGCGCTGCTCAAATAATGATACAGGAAAAGCTCTTTCTAC
GATAATGTACACGCTCACGCACCAACAGATGGCCAAAAAAAAAAAAACTATGTTTTTCGT
TTGTGTGTCAGCTCTACATTGCATCGTAACAGGGGGTTGAGGAAACACTCAACACTGTAC
ACCGCACCTTGTTTGTGCCTGGGCAAACGCCAAGAAAATCTTCTCATCGTGTTCAACTGC
GAAAGGCATCAGCTGTTTGATGTATGTAGACATGCCCTTTGAATCTTTCAACAACCAAAT
GCCACTGGCTTGTCATTAACTCTACTGCTGTTTGAGTGAGGGCATCAATTAAAGAACCCA
TCCCATCCCATACAGTATGAATGTATGTGTGGGAGAGCACCCTGAGGGCATCAACTAAAA
GCTTCATGGGCACATTTTTGCCTTGGCTCAGATTCCATCTTTTTGTTCATAGTGGCATAG
TGCTTACTGCTTACAACCATGCTCCCCACCCTGGAAACATTTGGCACAACCGGTCCGCAT
CTACTGCATCCTGTATCAGTTGTTGCACCTGGCCCTGTACACTTCTCATTTCACCATCTT
CATATCCATCTAGTTTCTGCTTAACACGGAGGATAGCTCGGGCTGCATCCTTGTTGCCCT
CGCAAGCCTCTTGCGAGTCATCCAAGCACGAGTCAATGTCTTCACTTTCCTTTTGACGCT
GTAAAGCCTTCAGTGGTGAAAGAGCCCATTTATACAACG

clustalw multiple alignements is not computed in this case