Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5310 cluster # 5310       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5310#0 length = 742 sequences # 3  
consensusID : consensus_5310#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 742
fasta sequence 
                              [TCTTTTTATTTTGCCGGGAAGGCCGAAGGAGGCCAACCGAGTATATTAAGAAGGAATAAAAGTTACAAGAGAAAAAACATCAAAATGCACCAAGGTGCATTGCCACACACCACACACTACCACCCAAGCACAAACCGCTGAGGGTGAAACCTAGCACCAAACGACCCCCGCTAAATGTGGCCGAACGCCGCTAGGCCTACGGCAACACCACAGAGACGAGGCTCCGAAAACGATGCCACCATGGTGGTCACGACATCCAGGATGCCGCCATCGCCCATCTAAAAAGATGTGGTTTTCACCCAGAGAAGCTCGCCAAGAAAGGGAGAGGGTAACCCTCGACAACGCTCCAAGGAAATTACGACGCCCGAAGACGTAGCCGCTGTCGGCCCGGTGAACCACCGGACTAGGCTTTCGCTTGGGACCCTACAACCTTGACTGCAGATCGCCGTCCACCAACTCAGAACCACCACACAGACAAATGGCAGCACGTGGCATCCACCACACCGCACCGACGCCCCTCCATCGGCCGACTTCAACGAACCACCACCCCTGAGAGCTGGCCCAGGACTCCTCCGTTCCACCACCCGCCGGCCGCCTCGCCAGATTTGGCCGAAGGAGAACCCGGGACTAGGTGGCATTGCTTCGGCAGCCTGAGCTTCCCCCACTGACAAGCTACCGCCTCAATCCAAACTATAAACTCCCCGCAAAGAAAGGGAGGAGCTCCATGAAAGCCGAGGGTGCC]

[+] EMBL CB656399             [TCTTTTTATTTTGCCGGGAAGGCCGAAGGAGGCCAACCGAGTCTATTAAGAAGGAATAAAAGTTACAAGAGAAAAAACATCAAAATGCACCAAGGTGCATTGCCACACACCACACACTACCACCCAAGCACAAACCGCTGAGGGTGAAACCTAGCACCAAACGACCCCCGCTAAATGTGGCCGAACGCCGCTAGGCCTACGGCAACACCACAGAGACGAGGCTCCGAAAACGATGCCACCATGGTGGTCACGACATCCAGGATGCCGCCATCGCCCATCTAAAAAGATGTGGTTTTCACCCAGAGAAGCTCGCCAAGAAAGGGAGAGGGTAACCCTCGACAACGCTCCAAGGAAATTACGACGCCCGAAGACGTAGCCGCTGTCGGCCCGGTGAACCACCGGACTAGGCTTTCGCTTGGGACCCTACAACCTTGACTGCAGATCGCCGTCCACCAACTCAGAACCACCACACAGACAAATGGCAGCACGTGGCATCCACCACACCGCACCGACGCCCCTCCATCGGCCGACTTCAACGAACCACCACCCCTGAGAGCTGGCCCAGGACTCCTCCGTTCCACCACCCGCCGGCCGCCTCGCCAGATTTGGCCGAAGGAGAACCCGGGACTAGGTGGCATTGCTTCGGCAGCCTGAGCTTCCCCCACTGACAAGCTACCGCCTCAATCCAAACTATAAACTCCCCGCAAAGAAAGGGAGGAG                      ]
[+] EMBL CB676582             [             CCGGGAAGGCCGAAGGAGGCCAACCGAGTATATTAAGAAGGAATAAAAGTTACAAGAGAAAAAACATCAAAATGCACCAAGGTGCATTGCCACACACCACACACTACCACCCAAGCACAAACCGCTGAGGGTGAAACCTAGCACCAAACGACCCCCGCTAAATGTGGCCGAACGCCGCTAGGCCTACGGCAACACCACAGAGACGAGGCTCCGAAAACGATGCCACCATGGTGGTCACGACATCCAGGATGCCGCCATCGCCCATCTAAAAAGATGTGGTTTTCACCCAGAGAAGCTCGCCAAGAAAGGGAGAGGGTAACCCTCGACAACGCTCCAAGGAAATTACGACGCCCGAAGACGTAGCCGCTGTCGGCCCGGTGAACCACCGGACTAGGCTTTCGCTTGGGACCCTACAACCTTGACTGCAGATCGCCGTCCACCAACTCAGAACCACCACACAGACAAATGGCAGCACGTGGCATCCACCACACCGCACCGACGCCCCTCCATCGGCCGACTTCAACGAACCACCACCCCTGAGAGCTGGCCCAGGACTCCTCCGTTCCACCACCCGCCGGCCGCCTCGCCAGATTTGGCCGAAGGAGAACCCGGGACTAGGTGGCATTGCTTCGGCAGCCTGAGCTTCCCCCACTGACAAGCTACCGCCTCAATCCAAACTATAAACTCCCCGCAAAGAAAGGGAGGAGCTCCATGAAAGCCGAGGGTGCC]
[-] EMBL AK062794             [                      CCGAAGGAGGCCAACCGAGTATATTAAGAAGGAATAAAAGTTACAAGAGAAAAAACATCAAAATGCACCAAGGTGCATTGCCACACACCACACACTACCACCCAAGCACAAACCGCTGAGGGTGAAACCTAGCACCAAACGACCCCCGCTAAATGTGGCCGAACGCCGCTAGGCCTACGGCAACACCACAGAGACGAGGCTCCGAAAACGATGCCACCATGGTGGTCACGACATCCAGGATGCCGCCATCGCCCATCTAAAAAGATGTGGTTTTCACCCAGAGAAGCTCGCCAAGAAAGGGAGAGGGTAACCCTCGACAACGCTCCAAGGAAATTACGACGCCCGAAGACGTAGCCGCTGTCGGCCCGGTGAACCACCGGACTAGGCTTTCGCTTGGGACCCTACAACCTTGACTGCAGATCGCCGTCCACCAACTCAGAACCACCACACAGACAAATGGCAGCACGTGGCATCCACCACACCGCACCGACGCCCCTCCATCGGCCGACTTCAACGAACCACCACCCCTGAGAGCTGGCCCAGGACTCCTCCGTTCCACCACCCGCCGGCCGCCTCGCCAGATTTGGCCGAAGGAGAACCCGGGACTAGGTGGCATTGCTTCGGCAGCCTGAGCTTCCCCCACTGACAAGCTACCGCCTC                                                            ]




>consensus_5310#0
TCTTTTTATTTTGCCGGGAAGGCCGAAGGAGGCCAACCGAGTATATTAAGAAGGAATAAA
AGTTACAAGAGAAAAAACATCAAAATGCACCAAGGTGCATTGCCACACACCACACACTAC
CACCCAAGCACAAACCGCTGAGGGTGAAACCTAGCACCAAACGACCCCCGCTAAATGTGG
CCGAACGCCGCTAGGCCTACGGCAACACCACAGAGACGAGGCTCCGAAAACGATGCCACC
ATGGTGGTCACGACATCCAGGATGCCGCCATCGCCCATCTAAAAAGATGTGGTTTTCACC
CAGAGAAGCTCGCCAAGAAAGGGAGAGGGTAACCCTCGACAACGCTCCAAGGAAATTACG
ACGCCCGAAGACGTAGCCGCTGTCGGCCCGGTGAACCACCGGACTAGGCTTTCGCTTGGG
ACCCTACAACCTTGACTGCAGATCGCCGTCCACCAACTCAGAACCACCACACAGACAAAT
GGCAGCACGTGGCATCCACCACACCGCACCGACGCCCCTCCATCGGCCGACTTCAACGAA
CCACCACCCCTGAGAGCTGGCCCAGGACTCCTCCGTTCCACCACCCGCCGGCCGCCTCGC
CAGATTTGGCCGAAGGAGAACCCGGGACTAGGTGGCATTGCTTCGGCAGCCTGAGCTTCC
CCCACTGACAAGCTACCGCCTCAATCCAAACTATAAACTCCCCGCAAAGAAAGGGAGGAG
CTCCATGAAAGCCGAGGGTGCC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)