These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [GCCATCAGTGGTCAGTGGTGTGATCAGTTGGAATCTAGCTAGCTAGAAGGTATAGAGATATTAGTGATGGCCCCGGCCTTTCTCTCCGACGAGCTCGCCGTCACGGTGTTGGCGGAGAGGCTGTAGAAGGTGTTCATGGACGCGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGACGACATTGTGGTTGAGGGGAATGGCGGTCCAGGCACCATCTACACCATGAAGCTTAACCCCGGTCGGTTTCGAACAATAGCATTGGCACATTTTCACTTCGTACACCTGTAATTTTGGAAAAGAAATTTTGGGAGGTGGGGGTGAGGAGCTTAATTTTCATCCTTTAGGCTAAGCTCGGGAGTGAGGGTTGGGAACCTTCACTTTCAGCATGCAAAATGAAGCGGCAGTTAGCGCATGACTAATTAAGTTTTAGCTAAAATAAGCATTGAAATAGATTAATATGATTTTCTAAAACAACTTTCATATAGATATTTTTTTGTAAAAACAAAATTTAGAAGTTTGATAAGCATACCTGCGAAAAACGAGGTAGAAGTTTGGAAGGAAAGTTTAGAACACAGCCTAGTTTTTTTTTTTTTTTGGATCTTTCTACTAACCTAGCCTCATCTGTCACTCGGTATCTTGAGATAAGTTGAGATCTTAACTAAGATAGTGTTTGGGAAGAAGTGACTAAAGTTTAGTCTCTCA] [+] EMBL CB676941 [GCCATCAGTGGTCAGTGGTGTGATCAGTTGGAATCTAGCTAGCTAGAAGGTATAGAGATATTAGTGATGGCCCCGGCCTTTCTCTCCGACGAGCTCGCCGTCACGGTGTTGGCGGAGAGGCTGTAGAAGGTGTTCATGGACGCGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGACGACATTGTGGTTGAGGGGAATGGCGGTCCAGGCACCATCTACACCATGAAGCTTAACCCCGGTCGGTTTCGAACAATAGCATTGGCACATTTTCACTTCGTACACCTGTAATTTTGGAAAAGAAATTTTGGGAGGTGGGGGTGAGGAGCTTAATTTTCATCCTTTAGGCTAAGCTCGGGAGTGAGGGTTGGGAACCTTCACTTTCAGCATGCAAAATGAAGCGGCAGTTAGCGCATGACTAATTAAGTTTTAGCTAAAATAAGCATTGAAATAGATTAATATGATTTTCTAAAACAACTTTCATATAGATATTTTTTTGTAAAAACAAAATTTAGAAGTTTGATAAGCATACCTGCGAAAAACGAGGTAGAAGTTTGGAAGGAAAGTTTAGAACACAGCCTAGTTTTTTTTTTTTTTTGGATCTTTCTACTAACCTAGCCTCATCTGTCACTCGGTATCTTGAGATAAGTTGAGATCTTAACTAAGATAGTGTTTGGGAAGAAGTGACTAAAGTTTAGTCTCTCA] consensusID : consensus_5317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [ATCTTGACCATGCCAAAATACCCATCCACCATCGTCTTCTCCTGCTCCGGCGACAACAAGCTGCCGTCGGCGAGCTCATACTCCACCTTGAACTTGGCCACGCAGGAGCCATCGCCGGTGCCCTCCATCTTCTTCTCCGTCGAGTGCGACTTGAGCTTGCCCACCTTGCTTTCTGCCTCCAGCACCTCTGACTTTAGCACGCGTGCTGCATTGTCACACACCGCCACTCGGGTCTTGAATGAATTCCCGACTCCCGCATCTGCATATAATAGGAATACTCCCTCCGTTTCAAAATATTTGACACCTTTGACTTTTTAACACATGTTTGACCGTTCGTCTTATTCAAAAAAAAATTGTGAAATATGTAAAACTATATGTGCACATGAAAGTATATTTAACAATGAGTCAAATGATACGAAAATAATAAATAATTACTTAAATTTTTTGAATAAGACAAATGATCAAACACATACGAAAAAATCAGCGGTGTCAAACATTTTGAAACGGAGGGAGTATTTTCTGTTATACATACCCAATCAATTCGCCTTGCACAGCTGTAATTTTA] [+] EMBL CB676942 [ATCTTGACCATGCCAAAATACCCATCCACCATCGTCTTCTCCTGCTCCGGCGACAACAAGCTGCCGTCGGCGAGCTCATACTCCACCTTGAACTTGGCCACGCAGGAGCCATCGCCGGTGCCCTCCATCTTCTTCTCCGTCGAGTGCGACTTGAGCTTGCCCACCTTGCTTTCTGCCTCCAGCACCTCTGACTTTAGCACGCGTGCTGCATTGTCACACACCGCCACTCGGGTCTTGAATGAATTCCCGACTCCCGCATCTGCATATAATAGGAATACTCCCTCCGTTTCAAAATATTTGACACCTTTGACTTTTTAACACATGTTTGACCGTTCGTCTTATTCAAAAAAAAATTGTGAAATATGTAAAACTATATGTGCACATGAAAGTATATTTAACAATGAGTCAAATGATACGAAAATAATAAATAATTACTTAAATTTTTTGAATAAGACAAATGATCAAACACATACGAAAAAATCAGCGGTGTCAAACATTTTGAAACGGAGGGAGTATTTTCTGTTATACATACCCAATCAATTCGCCTTGCACAGCTGTAATTTTA] consensusID : consensus_5317#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [TCTCCGACGAGCTTCCCCGTCACGGTGTTGCCGGAGAGCCTGTAGAAGGTGTTCATGACGCGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGACGACATTGTGTTGAGGGGAATGCGGTCCAGGCACCATCTACACCATGAAGCTTAACCCCGATGCGGGAGTCGGGAATACATACAAGACCCGAGTGCGGTGTGTGACAATGCAGCACGCGTGCTAAAGTCAGAGGTGCTGGAGGCAGAAAGCAAGGTGGGCAAGCTCAAGTCGCACTCAACGGAGACGAAGCTGGAGGGCACCGGCGATGGCTCCTGCGTGGCCAAGCTCAAGGTGGAGTACGAGCTCGCCGACGGCAGCTCAGCTGTCGCCGGAGCAGGAGAAGACGATGGTCGACGGCTACTTCGGCATGCTCAAGATGATGGAGGCGTACCTCGCCGCTCACCCTGCCGAATTCGCCTGAAAACTGTCTCAACCAACACAATCCATGGCTGATAATTAAATAATGCGAGCTCCAATTTTCTCGTGGCGTTTGATTTTTTTGAGACAGTTAAAAA] [+] EMBL BI799690 [TCTCCGACGAGCTTCCCCGTCACGGTGTTGCCGGAGAGCCTGTAGAAGGTGTTCATGACGCGTCCGCCATGCCCAAGGTCTGTGCCGGCTTCGTCGACGACATTGTGTTGAGGGGAATGCGGTCCAGGCACCATCTACACCATGAAGCTTAACCCCGATGCGGGAGTCGGGAATACATACAAGACCCGAGTGCGGTGTGTGACAATGCAGCACGCGTGCTAAAGTCAGAGGTGCTGGAGGCAGAAAGCAAGGTGGGCAAGCTCAAGTCGCACTCAACGGAGACGAAGCTGGAGGGCACCGGCGATGGCTCCTGCGTGGCCAAGCTCAAGGTGGAGTACGAGCTCGCCGACGGCAGCTCAGCTGTCGCCGGAGCAGGAGAAGACGATGGTCGACGGCTACTTCGGCATGCTCAAGATGATGGAGGCGTACCTCGCCGCTCACCCTGCCGAATTCGCCTGAAAACTGTCTCAACCAACACAATCCATGGCTGATAATTAAATAATGCGAGCTCCAATTTTCTCGTGGCGTTTGATTTTTTTGAGACAGTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5317#0 GCCATCAGTGGTCAGTGGTGTGATCAGTTGGAATCTAGCTAGCTAGAAGGTATAGAGATA 60 consensus_5317#2 ------------------------------------------------------------ consensus_5317#1 ------------------------------------------------------------ consensus_5317#0 TTAGTGATGGCCCCGGCCTTTCTCTCCGACGAGCT-CGCCGTCACGGTGTTGGCGGAGAG 119 consensus_5317#2 ----------------------TCTCCGACGAGCTTCCCCGTCACGGTGTTGCCGGAGAG 38 consensus_5317#1 ----------------------------------------ATCTTGACCATGCCAAAATA 20 ** * ** * * consensus_5317#0 GCTGTAGAAGGTGTTCATGGACGCGTCCGCCATGCCCAAG--GTCTGTGCCGGCTTCGTC 177 consensus_5317#2 CCTGTAGAAGGTGTTCATG-ACGCGTCCGCCATGCCCAAG--GTCTGTGCCGGCTTCGTC 95 consensus_5317#1 CCCATCCACCATCGTCTTCTCCTGCTCCGGCGACAACAAGCTGCCGTCGGCGAGCTCATA 80 * * * * ** * * **** * **** * * * ** ** * consensus_5317#0 GACGACATTGTGGTTGAGGGGAATGGCGGTCCAGGCACCATCTACACCATGAAGCTTAAC 237 consensus_5317#2 GACGACATTGTG-TTGAGGGGAATG-CGGTCCAGGCACCATCTACACCATGAAGCTTAAC 153 consensus_5317#1 CTCCACCTTGAACTTG---GCCACGCAGG---AGCCATCGCCGGTGCCCTCCATCTTCTT 134 * ** *** *** * * * ** ** ** * * ** * * *** consensus_5317#0 CCCGGTC------GGTTTCGAACAATAGCATTGGC---ACATTTTCACTTCGTACACCTG 288 consensus_5317#2 CCCGATGCGG---GAGTCGGGAATACATACAAGAC---CCGAGTGCGGTGTGTGACAATG 207 consensus_5317#1 CTCCGTCGAGTGCGACTTGAGCTTGCCCACCTTGCTTTCTGCCTCCAGCACCTCTGACTT 194 * * * * * * * * * * consensus_5317#0 TAATTTTGGAAAAGAAATTTTGGGAGGTGGGGGTGAGGAGCTTAATTTTCATCCTTTAGG 348 consensus_5317#2 CAGCACGCGTGCTAAAGTCAGAGGTGCTGGAGGCAGAAAGCAAGGTGGGCAAGCTCAAGT 267 consensus_5317#1 TAGCACGCGTGCTGCATTGTCACACACCGCCACTCGGGTCTTGAATGAATTCCCGACTCC 254 * * * * * * * consensus_5317#0 CTAAGCT--CGGGAGTGAGGGTTGGGAACCTTCACTTTCAG-CATGCAAAATGAAGCGGC 405 consensus_5317#2 CGCACTCAACGGAGACGAAGCTGGAGGGCACCGGCGATGGCTCCTGCGTGGCCAAGCTCA 327 consensus_5317#1 CGCATCTGCATATAATAGGAAT--ACTCCCTCCGTTTCAAAATATTTGACACCTTTGACT 312 * * * * * consensus_5317#0 AGTTAGCGCATGACTAA--TTAAGTTTTAGCTAAAATAAG-CATTGAAATAGATTAATAT 462 consensus_5317#2 AGGTGGAGTACGAGCTC--GCCGACGGCAGCTCAGCTGT--CGCCGGAGCAGGAGAAGAC 383 consensus_5317#1 TTTTAACACATGTTTGACCGTTCGTCTTATTCAAAAAAAAATTGTGAAATATGTAAAACT 372 * * * * * * * * ** consensus_5317#0 GATTTTCTAAAACAACTTTCATATAGATATTTTTTTGTAAAAACAAAATTTAGAAGTTTG 522 consensus_5317#2 GATGGTCGACGGCTACTTCGGCATG--------CTCAAGATGATGGAGGC--GTACCTCG 433 consensus_5317#1 ATATGTGCACATGAAAGTATATTTAACAATGAGTCAAATGATACGAAAAT-AATAAATAA 431 * * * * * * * * * consensus_5317#0 ATAAGCATACCTGCGAAAAACGAGGTAGAAGTTTGGAAGGAAAGTTTAGAACACAGCCTA 582 consensus_5317#2 CCGCTCAC-CCTGCCGAATTCGCCTGAAAACTGTCTCAACCA--------ACACAATCCA 484 consensus_5317#1 TTACTTAAATTTTTTGAATAAGAC---AAATGATCAAACACATACGAAAAAATCAGCGGT 488 * * ** * ** * * * * ** consensus_5317#0 GTTTTTTTTTTTTTTTGGATCTTTCTACTAA-CCTAGCCTCATCTGTC-ACTCGGTATCT 640 consensus_5317#2 ----TGGCTGATAATTAAATAATGCGAGCT--CCAATTTTCTCGTGGC-GTTTGATTTTT 537 consensus_5317#1 G---TCAAACATTTTGAAACGGAGGGAGTATTTTCTGTTATACATACCCAATCAATTCGC 545 * * * * * * * * * consensus_5317#0 TGAGATAAGTTGAGATCTTAACTAAGATAGTGTTTGGGAAGAAGTGACTAAAGTTTAGTC 700 consensus_5317#2 TTGAGACAGTTAAAAA-------------------------------------------- 553 consensus_5317#1 CTTGCACAGCTGTAATTTTA---------------------------------------- 565 ** * * consensus_5317#0 TCTCA 705 consensus_5317#2 ----- consensus_5317#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||