These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1454 fasta sequence [GTGCGTTTGTAACTTCCTCCGCAGCTATCTCCCTTGCTCTCGCCATCTCGCCATTCTAGCTCCCGCAAAGCTCTCCCCCCCCGAGGCGAGCTCTCTCTGCTCCCGAGCGAGAGCTCTCGCCATGGCGAAGAACGCATGCAAGCTCTGCTACCGCCGCTTCGCTAGCCCACGCGCCCTCGCGGGGCACATGCGGTCTCACTCTGTGGCGGCCGCCAACGCAGCCGCGGCTGCGGCGGCGGCCGCAGCCGCGAAGCTGCAGATCTCATCGGCGTCGTCCGCGTCGACGTCGTTCACCGCGGCCGATGGGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGCGTGGGATTCAAGAAGCCCCTTTCCATCTACGCGCTCCGGGAGAATCCCAAGCGCAGCCTCCGCGTCTCCGAGTACGCGTTCTCCGACCGCGAGAGCGAGGCCGAGTCCACCCCGACGCCCGCAGCCAAGGGCTTACGCGCCGGCGGCGGCGGCGGCGGCGGCGATGGCGAGCCCATGAGCTCGTTGTCGTACGCGGGAACGCCGGAGGAGGAGGTGGCGCTGGCCCTCATGATGCTCTCCCGCGACACCTGGCCGTCCGTCGAGCGCGGTGGCGGCGGGGGCGAGTACTCGGACGACGGGAGCGACGACGGCTACGCGCTCCCTCCGCCGTCTCCCGCTCCGGCGCCGGCGCCGGTGCCGGAGAAGCGGACGCGGTTCCAGTGCCCCGCGTGCAAGAAGGTGTTCCGGTCCTACCAGGCGCTCGGCGGCCACCGCGCCAGCCACGTCCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCCGTCGCTCCTCCCCCTCAGCCGCATCCGCAGCCGCCATTGCCGGAGCACGACGCGGGCGAGGAAGACATGGACGGGAAGGCGCCGCCGCACGAGTGCCCCTACTGCTACCGCGTGTTCGCCTCCGGGCAAGCTCTGGGCGGCCACAAGAAGTCTCACGTCTGCTCCGCCGCCGCCGCCGCGGCCCATGCACAGACACCCGGCGGCGGCGCTCCTCCGCCCCAGCCCAAAATTCTCGGCATGATCGATCTCAACTTCGCGCCGCCCGTGGATGAGGTGGAGCTCTCCGCCGTGTCAGATCCCCACTTCCCCTCCAATCCACCAGGTCCTTGAAGCAAGAAAACCAGACTTGGCAATGGCGGAGATGATGATCTGAGGTGAGGCATAAATCGAAGAAACAGAAAGAATAACAAAAAGAGGGAAAAAAAAAGAGAAGAGAAGGATAAACACAAGAACATATTTTTTAGCCCCTTAGTTAATCTTCTGGTCGTACCTTTTAGTATTCCATTCCATTGATTTGTGTTCAGAATGTTTAATTAATATGTTACTACCATGCTGTTGCTTTGTTTTTTTTTGCCTGTTTAAGCTATGGAATCGATGTAGATTTGAGCAACTGACAGTGCAACAAGAACTAGCCCCT] [+] EMBL AK064694 [GTGCGTTTGTAACTTCCTCCGCAGCTATCTCCCTTGCTCTCGCCATCTCGCCATTCTAGCTCCCGCAAAGCTCTCCCCCCCCGAGGCGAGCTCTCTCTGCTCCCGAGCGAGAGCTCTCGCCATGGCGAAGAACGCATGCAAGCTCTGCTACCGCCGCTTCGCTAGCCCACGCGCCCTCGCGGGGCACATGCGGTCTCACTCTGTGGCGGCCGCCAACGCAGCCGCGGCTGCGGCGGCGGCCGCAGCCGCGAAGCTGCAGATCTCATCGGCGTCGTCCGCGTCGACGTCGTTCACCGCGGCCGATGGGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGCGTGGGATTCAAGAAGCCCCTTTCCATCTACGCGCTCCGGGAGAATCCCAAGCGCAGCCTCCGCGTCTCCGAGTACGCGTTCTCCGACCGCGAGAGCGAGGCCGAGTCCACCCCGACGCCCGCAGCCAAGGGCTTACGCGCCGGCGGCGGCGGCGGCGGCGGCGATGGCGAGCCCATGAGCTCGTTGTCGTACGCGGGAACGCCGGAGGAGGAGGTGGCGCTGGCCCTCATGATGCTCTCCCGCGACACCTGGCCGTCCGTCGAGCGCGGTGGCGGCGGGGGCGAGTACTCGGACGACGGGAGCGACGACGGCTACGCGCTCCCTCCGCCGTCTCCCGCTCCGGCGCCGGCGCCGGTGCCGGAGAAGCGGACGCGGTTCCAGTGCCCCGCGTGCAAGAAGGTGTTCCGGTCCTACCAGGCGCTCGGCGGCCACCGCGCCAGCCACGTCCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCCGTCGCTCCTCCCCCTCAGCCGCATCCGCAGCCGCCATTGCCGGAGCACGACGCGGGCGAGGAAGACATGGACGGGAAGGCGCCGCCGCACGAGTGCCCCTACTGCTACCGCGTGTTCGCCTCCGGGCAAGCTCTGGGCGGCCACAAGAAGTCTCACGTCTGCTCCGCCGCCGCCGCCGCGGCCCATGCACAGACACCCGGCGGCGGCGCTCCTCCGCCCCAGCCCAAAATTCTCGGCATGATCGATCTCAACTTCGCGCCGCCCGTGGATGAGGTGGAGCTCTCCGCCGTGTCAGATCCCCACTTCCCCTCCAATCCACCAGGTCCTTGAAGCAAGAAAACCAGACTTGGCAATGGCGGAGATGATGATCTGAGGTGAGGCATAAATCGAAGAAACAGAAAGAATAACAAAAAGAGGGAAAAAAAAAGAGAAGAGAAGGATAAACACAAGAACATATTTTTTAGCCCCTTAGTTAATCTTCTGGTCGTACCTTTTAGTATTCCATTCCATTGATTTGTGTTCAGAATGTTTAATTAATATGTTACTACCATGCTGTTGCTTTGTTTTTTTTTGCCTGTTTAAGCTATGGAATCGATGTAGATTTGAGCAACTGACAGTGCAACAAGAACTAGCCCCT] consensusID : consensus_532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1320 fasta sequence [CCTCTGAAAGCTCGTATTTTTAGCTCTCCTAAGCTCTGTGCCTCATCAAGCTCTATCCAAGCTCTCGCCATGGCCAAGAACACATGCAAGCTCTGCTACCGCCGCTTCGGCAACCCCCGCGCCCTCGCCGGCCACATGCGCTCCCACTCAGTCGCCGCCTCGAGGTCGCAGATCTCCTCGACGTCCTCCGCGTCCACATCCGTCGCGGTCGGCGACGACGACGGCGGCGGTGATGCCAAGAGGCCCATCCAGGGATACGTGCTGCGGGAGAAGCCCAAGCGGAGGGTCCGCCTCGCCGAGTCCGACTTCTCGGATCGCGAGAGCGAGACGGAGTACTACTCCTCGCCGCCTCACGGCAAGCGCGCGAACACCGGATCGGGCGATGTCGAGCAGGTGAGCTCGGTGTCCGACGCCACGTCGGAGGAGGACGTAGCGCTGTCCCTCATGATGCTCTCCCGCGACACCTGGCCAGCCACGCCGCCGCCGCCGCCGCCCTACCGTCTCCGCGGCGCAGGCTACGACGACGGGAGCGACGGTGGCGACGCACCTCCGGCTCCGGCCGCAGCGGCCGCGCAGAAGCGGACGCGGTTCCAGTGCCCCGCATGCAAGAAGGTGTTCCGATCGTACCAGGCCCTCGGCGGCCATCGCGCTAGCCACATGCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCGCCTAACCCTCCTCCTTCTCCCGCTACGCCTCTCCAGCCATTGCCGGAGTGCGACGGCGGCGAGGAGGAGGGCGCGAAGCCGCATCCTCACGAGTGCCCCTACTGCTTCCGCGTGTTCGCGTCCGGCCAAGCTCTGGGCGGCCACAAGCGGTCCCAGCTGTGCTCAGCCGCGGCGGCGGCCGCATCGGGCGACGATATTCCAGCCATGATTAAAAGCAACGGCTTCATTGATCTGAACCTCCCGGCGCCGTTCGACGACGTGGAGCTCTCCGCCGTTTCAGATCCTTTCCTCTCCTCGAAGCCAGGTTCTTGAAAGCAAGCAGAGCATGAGAGAGCGAGCATACTGGCTGTTCAGTGCTCTCTCTCCTTTCGGTTGATTCCAAAGAAGATGGTTAGAGCTATGGATTCGAGAGAAAGAGCTGCTTAACCAGGCAGCCGAAAAGGTAAAGAAAATATCATAAAAAGGAGACATCTTTGCTTTGGTAGTTTTTTTTTTCTCAGTTGTTTTGTTCATTCAGCTACAAAAATTGCTTGATGCTGTCCTCCATTCTGTTCTGTCTTTTTGTTTGTTTCAAGCTACCCGAACAGTGTACATTGGGGCAACTAGCAGAGCTTAGCATCTTGCTTA] [+] EMBL AK121993 [CCTCTGAAAGCTCGTATTTTTAGCTCTCCTAAGCTCTGTGCCTCATCAAGCTCTATCCAAGCTCTCGCCATGGCCAAGAACACATGCAAGCTCTGCTACCGCCGCTTCGGCAACCCCCGCGCCCTCGCCGGCCACATGCGCTCCCACTCAGTCGCCGCCTCGAGGTCGCAGATCTCCTCGACGTCCTCCGCGTCCACATCCGTCGCGGTCGGCGACGACGACGGCGGCGGTGATGCCAAGAGGCCCATCCAGGGATACGTGCTGCGGGAGAAGCCCAAGCGGAGGGTCCGCCTCGCCGAGTCCGACTTCTCGGATCGCGAGAGCGAGACGGAGTACTACTCCTCGCCGCCTCACGGCAAGCGCGCGAACACCGGATCGGGCGATGTCGAGCAGGTGAGCTCGGTGTCCGACGCCACGTCGGAGGAGGACGTAGCGCTGTCCCTCATGATGCTCTCCCGCGACACCTGGCCAGCCACGCCGCCGCCGCCGCCGCCCTACCGTCTCCGCGGCGCAGGCTACGACGACGGGAGCGACGGTGGCGACGCACCTCCGGCTCCGGCCGCAGCGGCCGCGCAGAAGCGGACGCGGTTCCAGTGCCCCGCATGCAAGAAGGTGTTCCGATCGTACCAGGCCCTCGGCGGCCATCGCGCTAGCCACATGCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCGCCTAACCCTCCTCCTTCTCCCGCTACGCCTCTCCAGCCATTGCCGGAGTGCGACGGCGGCGAGGAGGAGGGCGCGAAGCCGCATCCTCACGAGTGCCCCTACTGCTTCCGCGTGTTCGCGTCCGGCCAAGCTCTGGGCGGCCACAAGCGGTCCCAGCTGTGCTCAGCCGCGGCGGCGGCCGCATCGGGCGACGATATTCCAGCCATGATTAAAAGCAACGGCTTCATTGATCTGAACCTCCCGGCGCCGTTCGACGACGTGGAGCTCTCCGCCGTTTCAGATCCTTTCCTCTCCTCGAAGCCAGGTTCTTGAAAGCAAGCAGAGCATGAGAGAGCGAGCATACTGGCTGTTCAGTGCTCTCTCTCCTTTCGGTTGATTCCAAAGAAGATGGTTAGAGCTATGGATTCGAGAGAAAGAGCTGCTTAACCAGGCAGCCGAAAAGGTAAAGAAAATATCATAAAAAGGAGACATCTTTGCTTTGGTAGTTTTTTTTTTCTCAGTTGTTTTGTTCATTCAGCTACAAAAATTGCTTGATGCTGTCCTCCATTCTGTTCTGTCTTTTTGTTTGTTTCAAGCTACCCGAACAGTGTACATTGGGGCAACTAGCAGAGCTTAGCATCTTGCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_532#0 GTGCGTTTGTAACTTCCTCCGCAGCTATCTCCCTTGCTCTCGCCATCTCGCCATTCTAGC 60 consensus_532#1 ------------------------------------CCTCTGAAAGCTCGTATTTTTAGC 24 * * * **** ** **** consensus_532#0 TCCCGCAAAGCTCTCCCCCCCCGAGGCGAGCTCTCTCTGCTCCCGAGCGAGAGCTCTCGC 120 consensus_532#1 TCTC-CTAAGCTCTGTGCCTC---ATCAAGCTCTATCCA------------AGCTCTCGC 68 ** * * ******* ** * * ****** ** ********* consensus_532#0 CATGGCGAAGAACGCATGCAAGCTCTGCTACCGCCGCTTCGCTAGCCCACGCGCCCTCGC 180 consensus_532#1 CATGGCCAAGAACACATGCAAGCTCTGCTACCGCCGCTTCGGCAACCCCCGCGCCCTCGC 128 ****** ****** *************************** * *** *********** consensus_532#0 GGGGCACATGCGGTCTCACTCTGTGGCGGCCGCCAACGCAGCCGCGGCTGCGGCGGCGGC 240 consensus_532#1 CGGCCACATGCGCTCCCACTCAGT------------------------------------ 152 ** ******** ** ***** ** consensus_532#0 CGCAGCCGCGAAGCTGCAGATCTCATCGGCGTCGTCCGCGTCGACGTCGTTCACCGCGGC 300 consensus_532#1 CGCCGCCTCGAGGTCGCAGATCTCCTCGACGTCCTCCGCGTCCACATC---CGTCGCGGT 209 *** *** *** * ********* *** **** ******** ** ** * ***** consensus_532#0 CGATGGGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGCGTGGGATTCAAGAAGCCCCTTTC 360 consensus_532#1 CGGCGACGACGACGGCGGCGGTGATG------------------CCAAGAGGCCCATCCA 251 ** * ** ** * * * ** * ***** **** * consensus_532#0 CATCTACGCGCTCCGGGAGAATCCCAAGCGCAGCCTCCGCGTCTCCGAGTACGCGTTCTC 420 consensus_532#1 GGGATACGTGCTGCGGGAGAAGCCCAAGCGGAGGGTCCGCCTCGCCGAGTCCGACTTCTC 311 **** *** ******** ******** ** ***** ** ****** ** ***** consensus_532#0 CGACCGCGAGAGCGAGGCCGAGTCCACCCCGACGCCCGCAGCCAAGGGCTTACGCGCCGG 480 consensus_532#1 GGATCGCGAGAGCGAGACGGAGTACTACTCCTCGCC---GCCTCACGGCAAGCGCGCGAA 368 ** ************ * **** * * * **** * * *** ***** consensus_532#0 CGGCGGCGGCGGCGGCGGCGATGGCGAGCCCATGAGCTCGTTGTCGTACGCGGGAACGCC 540 consensus_532#1 CACCGG-ATCGG-----GCGATGTCGAGCAGGTGAGCTCGGTGTCCGACGCC---ACGTC 419 * *** *** ****** ***** ******** **** **** *** * consensus_532#0 GGAGGAGGAGGTGGCGCTGGCCCTCATGATGCTCTCCCGCGACACCTGGCCGTCCGT-CG 599 consensus_532#1 GGAGGAGGACGTAGCGCTGTCCCTCATGATGCTCTCCCGCGACACCTGGCCAGCCACGCC 479 ********* ** ****** ******************************* ** * consensus_532#0 AGCGCGGTGGCGGCGGGGGCGAGTACTCGGACGACGGGAGCGACGACGGCTACG-CGCTC 658 consensus_532#1 GCCGCCGCCGCCGCCCTACCGTCTCCGCGG-CGCAGGCTACGACGACGGGAGCGACGGTG 538 *** * ** ** ** * * *** ** ** ********* ** ** * consensus_532#0 CCTCCGCCGTCTCCCGCTCCGGCGCCGGCGCCGGTGCCGGAGAAGCGGACGCGGTTCCAG 718 consensus_532#1 GCGACGC-ACCTCCGGCTCCGGCCGCAGCGGCCGCGC---AGAAGCGGACGCGGTTCCAG 594 * *** **** ******** * *** * * ** ******************** consensus_532#0 TGCCCCGCGTGCAAGAAGGTGTTCCGGTCCTACCAGGCGCTCGGCGGCCACCGCGCCAGC 778 consensus_532#1 TGCCCCGCATGCAAGAAGGTGTTCCGATCGTACCAGGCCCTCGGCGGCCATCGCGCTAGC 654 ******** ***************** ** ******** *********** ***** *** consensus_532#0 CACGTCCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCCGTCGCTCCTCCCCCTCAGCCG 838 consensus_532#1 CACATGCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCGCCTAACCCTCCTCCTTCTCCC 714 *** * ******************************** ***** *** ** consensus_532#0 CATCCGCAGCC---GCCATTGCCGGAGCACGACGCGGGCGAGGAAGACATGGACGGGAAG 895 consensus_532#1 GCTACGCCTCTCCAGCCATTGCCGGAGTGCGACGGCGGCGAGGAGGA---GGGCGCGAAG 771 * *** * ************* ***** ******** ** ** ** **** consensus_532#0 GCGCCGCCGCACGAGTGCCCCTACTGCTACCGCGTGTTCGCCTCCGGGCAAGCTCTGGGC 955 consensus_532#1 CCGCATCCTCACGAGTGCCCCTACTGCTTCCGCGTGTTCGCGTCCGGCCAAGCTCTGGGC 831 *** ** ******************* ************ ***** ************ consensus_532#0 GGCCACAAGAAGTCTCACGTCTGCTCCGCCGCCGCCGCCGCGGCCCATGCACAGACACCC 1015 consensus_532#1 GGCCACAAGCGGTCCCAGCTGTGCTCAGCCGCGGCGGCGGCCGC------------ATCG 879 ********* *** ** * ***** ***** ** ** ** ** * * consensus_532#0 GGCGGCGGCGCTCCTCCGCCCCAGCCCAAAATTCTCGGCATGATCGATCTCAACTTCGCG 1075 consensus_532#1 GGCGACGATATTCC---AGCCATGATTAAAAGCAACGGCTTCATTGATCTGAACCTCCCG 936 **** ** *** ** * **** **** * ** ***** *** ** ** consensus_532#0 CCGCCCGTGGATGAGGTGGAGCTCTCCGCCGTGTCAGATCCCCACTTCCCCTCCAATCCA 1135 consensus_532#1 GCGCCGTTCGACGACGTGGAGCTCTCCGCCGTTTCAGATCCTTTCCTCTCCTCGAA---G 993 **** * ** ** ***************** ******** * ** **** ** consensus_532#0 CCAGGTCCTTGAA-GCAAGAAAACCA-GACTTGGCAATGGCGGAGATGATGATCTGAGGT 1193 consensus_532#1 CCAGGTTCTTGAAAGCAAGCAGAGCATGAGAGAGCGA--GCATACTGGCTGTTCAGTGCT 1051 ****** ****** ***** * * ** ** ** * ** * * ** ** * * * consensus_532#0 GAGGCATAAATCGAAGAAA--CAGAAAGAATAACAAAAAGAGGGAA----AAAAAAAGAG 1247 consensus_532#1 CTCTCTCCTTTCGGTTGATTCCAAAGAAGATGGTTAGAGCTATGGATTCGAGAGAAAGAG 1111 * *** * ** * * ** * * * * * * ****** consensus_532#0 AAG---AGAAGGATAAACACAAGAACATATTTTTTAGCCCCTTAGTTAATCTTCTGGTCG 1304 consensus_532#1 CTGCTTAACCAGGCAGCCGAAAAGGTAAAGAAAATATCATAAAAAGGAGACATCTTTGCT 1171 * * * * * ** * * ** * * * * *** * consensus_532#0 TACCTTTTAGTATTCCATTCCATTGATTTGT--GTTCAGAATGTTTAATTAATATGTTAC 1362 consensus_532#1 TTGGTAGTTTTTTTTTTCTCAGTTGTTTTGTTCATTCAGC-TACAAAAATTGCTTGATGC 1230 * * * * ** ** *** ***** ***** * ** * ** * * consensus_532#0 TACCATGCTGTTGCTTTGTTTTTTTTTGCCTGTTT-AAGCTATGGAATCGATGTAGATTT 1421 consensus_532#1 TGTCCT-CCATTCTGTTCTGTCTTTTTGTTTGTTTCAAGCTACCCGAACAGTGTACATTG 1289 * * * * ** ** * * ****** ***** ****** * * **** *** consensus_532#0 GAGCAACTGACAGTGCAACAAGAACTAGCCCCT 1454 consensus_532#1 GGGCAACTAGCAGAGCT-TAGCATCTTGCTTA- 1320 * ****** *** ** * * ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||