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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1217 fasta sequence
[CTTTTTAGTTTTAAAATACAGGACGTTTAATTTACACAAACCCTGTACAACCATGAACATTATTACATATTTAGCATCTCACATCCGATCGAAGAACTAAACTGACGAACTAATTAAAGTTGAGTAGAACTGTAGATAATTTTTGTACTTGGACACACGCATTCATTCATATAGCATAGCTATCAGAGATTTCAGAGATGCAGCGGATGAACACACGGACGAGACGATAATATGGAGCAAAACAGAGAGCATGAGTAGAGTGTCATCATCAGTCTTTGTCCAACCCGAACTTACGATCGATGTAGCCGCCAACGGCGTGGAACGCCGGGCCGAAGAACCCGCCGCCGCCGCCGTTGCTTCCTGATCCAGCGCCGCCGCCGCCGCCGCCTCTCCTCCTCCTGTCGCCCTCGCTCTCGTACTGCGACGACGAGCCGTAGCCGGGCGGCGTGTGGTAGATGACCTTCACCTCCTCCGCGCTGATGTACACCGGCGTCGCCCCGGACCTGCCGTCCTGCGGCGGCGGCGGAACCGGCCAGCCGGTGTAGGGAATAGGTGCGGCGCCGGCTCCGGTTATGATGATGCTGCTGCCGCCGCCGTCCTTGCCGCCGTAGGAAGAGTTGCCGCCGCCGTAGGGAGAGTTGCTGCCGCCGTAGCCGCCGTCTTTACCGTAGGAAGATGATCCACCGCCGTAGGAAGTGTTGCCGCCGCCATAGCCGCCGCCGCCGCCGCTGTAGTAGGAGCCTGAACCTGCGACTCCCGTGCTGCTGCCGTAGTAATTGTTGGGGTTGCCGCTGTTGCCGCCATAGCTGTCCTTGCTGTAGTTGCTGCTGTTGCCGCCGCCGCCATGGCTGTCCTTGTTGTGGTTGTTCCGGTCTTTCTCGTCGTCCTTGTGCTTGTTGCTGCTGGTGGTCTTGTGCTTGTTCTGGTCTTTGTCGTTGTCGCTGCCATTGTTGTTGTTGTTGCTGCTTGTGTAGCTGTGGTAATCCTTCGTCTTGGTCTCCTTCTTGTCGCCGGCGCCGCGCGGCGGCGACGACGACCGCCTGTTGCCGCCGCCGCCTGATCCGGCACCGTACGGAGGGTTGTCGTAGTACGGGCTGTTCCACGCCGACATCGTCTCGATCTCTAGCTTGATCCCCAACTTAATCACTCAAGATCGAGCTAGGGTTCGTCTAGATATATATCCCAGATCGACAGGGGAAGCAGATAGCTAGCTAGTG]
[+] EMBL CB621464 [CTTTTTAGTTTTAAAATACAGGACGTTTAATTTACACAAACCCTGTACAACCATGAACATTATTACATATTTAGCATCTCACATCCGATCGAAGAACTAAACTGACGAACTAATTAAAGTTGAGTAGAACTGTAGATAATTTTTGTACTTGGACACACGCATTCATTCATATAGCATAGCTATCAGAGATTTCAGAGATGCAGCGGATGAACACACGGACGAGACGATAATATGGAGCAAAACAGAGAGCATGAGTAGAGTGTCATCATCAGTCTTTGTCCAACCCGAACTTACGATCGATGTAGCCGCCAACGGCGTGGAACGCCGGGCCGAAGAACCCGCCGCCGCCGCCGTTGCTTCCTGATCCAGCGCCGCCGCCGCCGCCGCCTCTCCTCCTCCTGTCGCCCTCGCTCTCGTACTGCGACGACGAGCCGTAGCCGGGCGGCGTGTGGTAGATGACCTTCACCTCCTCCGCGCTGATGTACACCGGCGTCGCCCCGGACCTGCCGTCCTGCGGCGGCGGCGGAACCGGCCAGCCGGTGTAGGGAATAGGTGCGGCGCCGGCTCCGGTTATGATGATGCTGCTGCCGCCGCCGTCCTTGCCGCCGTAGGAAGAGTTGCCGCCGCCGTAGGGAGAGTTGCTGCCGCCGTAGCCGCCGTCTTTACCGTAGGAAGATGATCCACCGCCGTAGGAAGTGTTGCCGCCGCCATAGCCGCCGCCGCCGCCGCTGTAGTAGGAGCCTGAACCTGCGACTCCCGTGCTGCTGCCGTAGTAATTGTTGGGGTTGCCGCTGTTGCCGCCATAGCTGTCCTTGCTGTAGTT ]
[-] EMBL CB621463 [ GCCGTAGCCGGGCGGCGTGTGGTAGATGACCTTCACCTCCTCCGCGCTGATGTACACCGGCGTCGCCCCGGACCTGCCGTCCTGCGGCGGCGGCGGAACCGGCCAGCCGGTGTAGGGAATAGGTGCGGCGCCGGCTCCGGTTATGATGATGCTGCTGCCGCCGCCGTCCTTGCCGCCGTAGGAAGAGTTGCCGCCGCCGTAGGGAGAGTTGCTGCCGCCGTAGCCGCCGTCTTTACCGTAGGAAGATGATCCACCGCCGTAGGAAGTGTTGCCGCCGCCATAGCCGCCGCCGCCGCCGCTGTAGTAGGAGCCTGAACCTGCGACTCCCGTGCTGCTGCCGTAGTAATTGTTGGGGTTGCCGCTGTTGCCGCCATAGCTGTCCTTGCTGTAGTTGCTGCTGTTGCCGCCGCCGCCATGGCTGTCCTTGTTGTGGTTGTTCCGGTCTTTCTCGTCGTCCTTGTGCTTGTTGCTGCTGGTGGTCTTGTGCTTGTTCTGGTCTTTGTCGTTGTCGCTGCCATTGTTGTTGTTGTTGCTGCTTGTGTAGCTGTGGTAATCCTTCGTCTTGGTCTCCTTCTTGTCGCCGGCGCCGCGCGGCGGCGACGACGACCGCCTGTTGCCGCCGCCGCCTGATCCGGCACCGTACGGAGGGTTGTCGTAGTACGGGCTGTTCCACGCCGACATCGTCTCGATCTCTAGCTTGATCCCCAACTTAATCACTCAAGATCGAGCTAGGGTTCGTCTAGATATATATCCCAGATCGACAGGGGAAGCAGATAGCTAGCTAGTG]
consensusID : consensus_5325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[TTTTTTTTTTCTTCTAGGACGTACGGCCATCCATGAAAAATACAGGACGTTTAATTTACACAAACACTGTACAACCATGAACATTATTACATATTTAGCATCTCACATCCGATCGAAGAACTAAACTGACGAACTAATTAAAGTTGAGTAGAACTGTAGATAATTTTGGTACTGTGGACACACGCATTCATTCATATAGCATAGCTATCAGAGATTTCAGAGATGCAGCGGATGAACACACGGACGAGACGATAATATGGAGCAAAACAGAGAGCATGAGTAGAGTGTCATCATCAGTCTTGGTCCAACCCGAACTTACGATCGATGTAGCCGCCAACGGCGTGGAACGCCGGGCCGAANAACCCGCCGCCGCCGCCGTTGCTTCCTGATCCAGCGCCGCCGCCGCCGCCGCTCTCCTCCTCCTGTCGCCCTCGCTCTCGTACTGGGACGACGAGCCGTAGCCGGGCTGGGTGTGGTAGATGACTTCACTCCTCCGCGCTGATGTACACCGGCGTCGCCCGG]
[-] EMBL BM420928 [TTTTTTTTTTCTTCTAGGACGTACGGCCATCCATGAAAAATACAGGACGTTTAATTTACACAAACACTGTACAACCATGAACATTATTACATATTTAGCATCTCACATCCGATCGAAGAACTAAACTGACGAACTAATTAAAGTTGAGTAGAACTGTAGATAATTTTGGTACTGTGGACACACGCATTCATTCATATAGCATAGCTATCAGAGATTTCAGAGATGCAGCGGATGAACACACGGACGAGACGATAATATGGAGCAAAACAGAGAGCATGAGTAGAGTGTCATCATCAGTCTTGGTCCAACCCGAACTTACGATCGATGTAGCCGCCAACGGCGTGGAACGCCGGGCCGAANAACCCGCCGCCGCCGCCGTTGCTTCCTGATCCAGCGCCGCCGCCGCCGCCGCTCTCCTCCTCCTGTCGCCCTCGCTCTCGTACTGGGACGACGAGCCGTAGCCGGGCTGGGTGTGGTAGATGACTTCACTCCTCCGCGCTGATGTACACCGGCGTCGCCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5325#0 --------------------------CTTTTTAGTTTTAAAATACAGGACGTTTAATTTA 34
consensus_5325#1 TTTTTTTTTTCTTCTAGGACGTACGGCCATCCA--TGAAAAATACAGGACGTTTAATTTA 58
* * * * **********************
consensus_5325#0 CACAAACCCTGTACAACCATGAACATTATTACATATTTAGCATCTCACATCCGATCGAAG 94
consensus_5325#1 CACAAACACTGTACAACCATGAACATTATTACATATTTAGCATCTCACATCCGATCGAAG 118
******* ****************************************************
consensus_5325#0 AACTAAACTGACGAACTAATTAAAGTTGAGTAGAACTGTAGATAATTTTTGTACT-TGGA 153
consensus_5325#1 AACTAAACTGACGAACTAATTAAAGTTGAGTAGAACTGTAGATAATTTTGGTACTGTGGA 178
************************************************* ***** ****
consensus_5325#0 CACACGCATTCATTCATATAGCATAGCTATCAGAGATTTCAGAGATGCAGCGGATGAACA 213
consensus_5325#1 CACACGCATTCATTCATATAGCATAGCTATCAGAGATTTCAGAGATGCAGCGGATGAACA 238
************************************************************
consensus_5325#0 CACGGACGAGACGATAATATGGAGCAAAACAGAGAGCATGAGTAGAGTGTCATCATCAGT 273
consensus_5325#1 CACGGACGAGACGATAATATGGAGCAAAACAGAGAGCATGAGTAGAGTGTCATCATCAGT 298
************************************************************
consensus_5325#0 CTTTGTCCAACCCGAACTTACGATCGATGTAGCCGCCAACGGCGTGGAACGCCGGGCCGA 333
consensus_5325#1 CTTGGTCCAACCCGAACTTACGATCGATGTAGCCGCCAACGGCGTGGAACGCCGGGCCGA 358
*** ********************************************************
consensus_5325#0 AGAACCCGCCGCCGCCGCCGTTGCTTCCTGATCCAGCGCCGCCGCCGCCGCCGCCTCTCC 393
consensus_5325#1 ANAACCCGCCGCCGCCGCCGTTGCTTCCTGATCCAGCGCCGCCGCCGCCGCCGC-TCTCC 417
* **************************************************** *****
consensus_5325#0 TCCTCCTGTCGCCCTCGCTCTCGTACTGCGACGACGAGCCGTAGCCGGGCGGCGTGTGGT 453
consensus_5325#1 TCCTCCTGTCGCCCTCGCTCTCGTACTGGGACGACGAGCCGTAGCCGGGCTGGGTGTGGT 477
**************************** ********************* * *******
consensus_5325#0 AGATGACCTTCACCTCCTCCGCGCTGATGTACACCGGCGTCGCCCCGGACCTGCCGTCCT 513
consensus_5325#1 AGATGAC-TTCAC-TCCTCCGCGCTGATGTACACCGGCGTCGCCCGG------------- 522
******* ***** ******************************* *
consensus_5325#0 GCGGCGGCGGCGGAACCGGCCAGCCGGTGTAGGGAATAGGTGCGGCGCCGGCTCCGGTTA 573
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 TGATGATGCTGCTGCCGCCGCCGTCCTTGCCGCCGTAGGAAGAGTTGCCGCCGCCGTAGG 633
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 GAGAGTTGCTGCCGCCGTAGCCGCCGTCTTTACCGTAGGAAGATGATCCACCGCCGTAGG 693
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 AAGTGTTGCCGCCGCCATAGCCGCCGCCGCCGCCGCTGTAGTAGGAGCCTGAACCTGCGA 753
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 CTCCCGTGCTGCTGCCGTAGTAATTGTTGGGGTTGCCGCTGTTGCCGCCATAGCTGTCCT 813
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 TGCTGTAGTTGCTGCTGTTGCCGCCGCCGCCATGGCTGTCCTTGTTGTGGTTGTTCCGGT 873
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 CTTTCTCGTCGTCCTTGTGCTTGTTGCTGCTGGTGGTCTTGTGCTTGTTCTGGTCTTTGT 933
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 CGTTGTCGCTGCCATTGTTGTTGTTGTTGCTGCTTGTGTAGCTGTGGTAATCCTTCGTCT 993
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 TGGTCTCCTTCTTGTCGCCGGCGCCGCGCGGCGGCGACGACGACCGCCTGTTGCCGCCGC 1053
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 CGCCTGATCCGGCACCGTACGGAGGGTTGTCGTAGTACGGGCTGTTCCACGCCGACATCG 1113
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 TCTCGATCTCTAGCTTGATCCCCAACTTAATCACTCAAGATCGAGCTAGGGTTCGTCTAG 1173
consensus_5325#1 ------------------------------------------------------------
consensus_5325#0 ATATATATCCCAGATCGACAGGGGAAGCAGATAGCTAGCTAGTG 1217
consensus_5325#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||