These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1963 fasta sequence [GCCCCCTCGCCTTATCCGCATCCCCAACCGCCACTACAGGCAGCGGCGCAGCACCAGAGAGCGGAGGCGGCGGGAGGAGCGGGATTCGGAGGGGGAGCGCGGCCACGGAGGGGCACACGGGGGCGCAACAGGGTCGGGCGCTCGGCGCCATGGATGCTAAGAAGGGCTCGGGGGAGCCGGAGTTCTTCAGCGAGTACGGCGATGCGAGCCGGTACGAGGTCACCGAGGTGGTCGGCAAGGGCAGCTACGGCGTGGTGGCCGCCGCCGTCGACACTCACACCGGCGGGCGCGTCGCCATCAAGAAGATCAACGACGTCTTCGAGCACATCTCCGACGCCACCCGCATCCTCCGCGAGATCAAGCTACTCCGCCTCCTGCGCCACCCGGACATCGTCGAGATCAAGCACATCATGCTCCCACCCTCCCGCCGCGAGTTTCGCGACATTTACATTATCTTCGAACTCATGGAGTCCGATCTCCACCAGGTCATCAAGGCCAACGACGACCTCACCCCCGAGCACCACCAGTTCTTCCTCTACCAGCTGCTTCGTGGGATGAAGTACATTCATGCCGCCAGCGTCTTCCACCGGGACCTCAAGCCCAAGAACATTCTTGCCAATGCTGATTGCAAGGTCAAGATTTGTGACTTCGGCCTTGCTCGAGTGTCCTTCGACGACACTCCGTCCGCGATATTCTGGACGGATTACGTGGCAACAAGATGGTATCGCGCTCCAGAGTTGTGCGGCTCTTTCTTTTCAAAGTACACTCCTGCAATTGATATTTGGAGCGTCGGTTGTATATTTGCTGAAATGCTTATGGGAAAGCCACTTTTTCCTGGAAAGAATGTGGTACATCAATTGGATCTCATGACCGACTTACTTGGCTCTCCTTCAGGAGAAACTATTTCCAGGATTCGGAATGAGAAAGCTCGACGATATTTGGGCAACATGAGAAAAAAGCCTCGAGTGCCTTTTTCTCAGAAATTTCCTGGTGCAGACCCAATGGCTCTCCATTTGCTTGAACGGTTACTTGCTTTTGATCCCAAGGATCGGCCAACTGCTGCAGAGGCCTTAACAGATCCATACTTTACTGGATTGGCAAATTCGGAACGTGAACCCATAGCACAACCCATCTCAAAACTCGAGTTTGAGTTTGAGAGAAGGAAGCTAGCAAAAGATGATGTCCGGGAATTAATTTACAGAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGTCAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGTCGATGGATTTCACTGTCACCCTATACTTTATTCTTAGCCGAGCATAGGAGACTTAGTCACTGATTAGATCATGTAACTAGTGATAACAATGTATCAACATATGCAT] [+] EMBL AK069424 [GCCCCCTCGCCTTATCCGCATCCCCAACCGCCACTACAGGCAGCGGCGCAGCACCAGAGAGCGGAGGCGGCGGGAGGAGCGGGATTCGGAGGGGGAGCGCGGCCACGGAGGGGCACACGGGGGCGCAACAGGGTCGGGCGCTCGGCGCCATGGATGCTAAGAAGGGCTCGGGGGAGCCGGAGTTCTTCAGCGAGTACGGCGATGCGAGCCGGTACGAGGTCACCGAGGTGGTCGGCAAGGGCAGCTACGGCGTGGTGGCCGCCGCCGTCGACACTCACACCGGCGGGCGCGTCGCCATCAAGAAGATCAACGACGTCTTCGAGCACATCTCCGACGCCACCCGCATCCTCCGCGAGATCAAGCTACTCCGCCTCCTGCGCCACCCGGACATCGTCGAGATCAAGCACATCATGCTCCCACCCTCCCGCCGCGAGTTTCGCGACATTTACATTATCTTCGAACTCATGGAGTCCGATCTCCACCAGGTCATCAAGGCCAACGACGACCTCACCCCCGAGCACCACCAGTTCTTCCTCTACCAGCTGCTTCGTGGGATGAAGTACATTCATGCCGCCAGCGTCTTCCACCGGGACCTCAAGCCCAAGAACATTCTTGCCAATGCTGATTGCAAGGTCAAGATTTGTGACTTCGGCCTTGCTCGAGTGTCCTTCGACGACACTCCGTCCGCGATATTCTGGACGGATTACGTGGCAACAAGATGGTATCGCGCTCCAGAGTTGTGCGGCTCTTTCTTTTCAAAGTACACTCCTGCAATTGATATTTGGAGCGTCGGTTGTATATTTGCTGAAATGCTTATGGGAAAGCCACTTTTTCCTGGAAAGAATGTGGTACATCAATTGGATCTCATGACCGACTTACTTGGCTCTCCTTCAGGAGAAACTATTTCCAGGATTCGGAATGAGAAAGCTCGACGATATTTGGGCAACATGAGAAAAAAGCCTCGAGTGCCTTTTTCTCAGAAATTTCCTGGTGCAGACCCAATGGCTCTCCATTTGCTTGAACGGTTACTTGCTTTTGATCCCAAGGATCGGCCAACTGCTGCAGAGGCCTTAACAGATCCATACTTTACTGGATTGGCAAATTCGGAACGTGAACCCATAGCACAACCCATCTCAAAACTCGAGTTTGAGTTTGAGAGAAGGAAGCTAGCAAAAGATGATGTCCGGGAATTAATTTACAGAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGTCAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGTCGATGGATTTCACTGTCACCCTATACTTTATTCTTAGCCGAGCATAGGAGACTTAGTCACTGATTAGATCATGTAACTAGTGATAACAATGTATCAACATATGCAT] consensusID : consensus_5328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence [GGAATTAATTTACAGAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGTCAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGCCTCGTGCCGAATCCGGCACG] [-] EMBL CA998105 [GGAATTAATTTACAGAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGTCAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGCCTCGTGCCGAATC ] [-] EMBL CA998052 [ CCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCAGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGAGATATTTGACTTCAGCTCCTGATTTTAGCCTCGTGCCGAATTCGGCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5328#0 GCCCCCTCGCCTTATCCGCATCCCCAACCGCCACTACAGGCAGCGGCGCAGCACCAGAGA 60 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 GCGGAGGCGGCGGGAGGAGCGGGATTCGGAGGGGGAGCGCGGCCACGGAGGGGCACACGG 120 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 GGGCGCAACAGGGTCGGGCGCTCGGCGCCATGGATGCTAAGAAGGGCTCGGGGGAGCCGG 180 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 AGTTCTTCAGCGAGTACGGCGATGCGAGCCGGTACGAGGTCACCGAGGTGGTCGGCAAGG 240 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 GCAGCTACGGCGTGGTGGCCGCCGCCGTCGACACTCACACCGGCGGGCGCGTCGCCATCA 300 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 AGAAGATCAACGACGTCTTCGAGCACATCTCCGACGCCACCCGCATCCTCCGCGAGATCA 360 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 AGCTACTCCGCCTCCTGCGCCACCCGGACATCGTCGAGATCAAGCACATCATGCTCCCAC 420 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 CCTCCCGCCGCGAGTTTCGCGACATTTACATTATCTTCGAACTCATGGAGTCCGATCTCC 480 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 ACCAGGTCATCAAGGCCAACGACGACCTCACCCCCGAGCACCACCAGTTCTTCCTCTACC 540 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 AGCTGCTTCGTGGGATGAAGTACATTCATGCCGCCAGCGTCTTCCACCGGGACCTCAAGC 600 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 CCAAGAACATTCTTGCCAATGCTGATTGCAAGGTCAAGATTTGTGACTTCGGCCTTGCTC 660 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 GAGTGTCCTTCGACGACACTCCGTCCGCGATATTCTGGACGGATTACGTGGCAACAAGAT 720 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 GGTATCGCGCTCCAGAGTTGTGCGGCTCTTTCTTTTCAAAGTACACTCCTGCAATTGATA 780 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 TTTGGAGCGTCGGTTGTATATTTGCTGAAATGCTTATGGGAAAGCCACTTTTTCCTGGAA 840 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 AGAATGTGGTACATCAATTGGATCTCATGACCGACTTACTTGGCTCTCCTTCAGGAGAAA 900 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 CTATTTCCAGGATTCGGAATGAGAAAGCTCGACGATATTTGGGCAACATGAGAAAAAAGC 960 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 CTCGAGTGCCTTTTTCTCAGAAATTTCCTGGTGCAGACCCAATGGCTCTCCATTTGCTTG 1020 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 AACGGTTACTTGCTTTTGATCCCAAGGATCGGCCAACTGCTGCAGAGGCCTTAACAGATC 1080 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 CATACTTTACTGGATTGGCAAATTCGGAACGTGAACCCATAGCACAACCCATCTCAAAAC 1140 consensus_5328#1 ------------------------------------------------------------ consensus_5328#0 TCGAGTTTGAGTTTGAGAGAAGGAAGCTAGCAAAAGATGATGTCCGGGAATTAATTTACA 1200 consensus_5328#1 ----------------------------------------------GGAATTAATTTACA 14 ************** consensus_5328#0 GAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGT 1260 consensus_5328#1 GAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGT 74 ************************************************************ consensus_5328#0 CAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAG 1320 consensus_5328#1 CAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAG 134 ************************************************************ consensus_5328#0 AAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAA 1380 consensus_5328#1 AAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAA 194 ************************************************************ consensus_5328#0 GGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGT 1440 consensus_5328#1 GGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGT 254 ************************************************************ consensus_5328#0 TGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCT 1500 consensus_5328#1 TGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCT 314 ************************************************************ consensus_5328#0 TAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAA 1560 consensus_5328#1 TAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAA 374 ************************************************************ consensus_5328#0 AAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATG 1620 consensus_5328#1 AAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATG 434 ************************************************************ consensus_5328#0 GGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCA 1680 consensus_5328#1 GGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCA 494 ************************************************************ consensus_5328#0 ATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGA 1740 consensus_5328#1 ATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGA 554 ************************************************************ consensus_5328#0 TATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCT 1800 consensus_5328#1 TATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCT 614 ************************************************************ consensus_5328#0 CTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGTCGA 1860 consensus_5328#1 CTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGCCTC 674 ******************************************************** * consensus_5328#0 TGGATTTCACTGTCACCCTATACTTTATTCTTAGCCGAGCATAGGAGACTTAGTCACTGA 1920 consensus_5328#1 GTGCCGAATCCGGCACG------------------------------------------- 691 * * * *** consensus_5328#0 TTAGATCATGTAACTAGTGATAACAATGTATCAACATATGCAT 1963 consensus_5328#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||