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Oryza sativa
cluster # 534 cluster # 534       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_534#0 length = 1425 sequences # 2  

consensusID : consensus_534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1425
fasta sequence
                              [GAATTTGGAGAAAAGTGCAGGTGGAATCAAGATTGTCCGGGTTGAAAAGGCTGTTGAGCCAAGAAAAGAGTTTGATGAAACTGCAAAAGCAAGTGGTGGAGCGACACGAAACACATTGCCCCTTTTTGATAGTATTGCCAAAGAGAATTTAATGAGGCCCTCAATTTTTCGGGAAACTAAGATGCAGCACATGGCTGCTGAGGCAGCTGTGTTGCTATCCAAGGAATCCGATGACATGAGGAGTTGTGCCATGTCATTAGGCTCATCTGGCTTGCATGATAAGGAGCAGGAGTCTTCGCTGGAATCAGAAGGTGGCTGTGAAGAAGATGATGATGATGACATGGATAGTGAATACTTGGCATATACCAGAGATAGTACTAAAACGGCAACTAATGATGGTGAATGTCTTACTCAAGAGGAGATGGCTGGATCATCAGGGAATCAGAAGCCACTATCTTCACTGGACTTCACAACAGGTTGTGATGACATGCCATGTTCCGATGTCCATCACCATTCACTGGGAAATAGTGAACTGGAAAATGACGATACCACTAAGTCGTGTGCTTGTTCTTTCTGTCTTAAGGCTGCATTCATGTGGACCGATCTCCATTATCAGGACACAAGGGGACGGCTTGCTGCATTGAAGAAGAGCATAAAGTTCGCTAGATTGCTGGGCAAGAGAAGCCAAGGAGATGAATATTCTGTTAATGCAGGCAGATACAACTTGAAACGGGTTGCAGAGATGGAGTTTGAGCTATATCAACAGCAAAGATCACTCTTCCTTCATACAGAAAATGTCCTTATCCGTGAGAGCGCACAGCTTCATTCATCTCTTGTGAAGTTAAAGG-AATTCAGAGAGAACTGCAAGACAGATCTCGAGACGGCTAGCAGTTCGTTGTTGGGAAAATGAATCTTTCATGGTTGTGCTGTTAAACTGCTTTTGCCTGGGATTCTTCAGATCAGCTGGGCCAGTTTGAGTCAAGTTGTGCATTGAGATTGGTTGATTGCTAGGAAGATTAGTGGTTATTGCCAGTCAGGAAGTTTGGTTATAGTGATGGTACTACCTATATGCAGTGTTCAGCATCTTTGTTTGTAAAAATCGTGTGGGAAGGTCGGAACTCCAAGTTAGCGACATGATTCTCCTCAGTTGTAACTGGCAGTTAGCTTGCGCCATGTGGTATCTGTATGATGTTTCCTGCTCCCAAGCATAATGGTGGAAGAACGATGATTTGACTTCTTTTTTTTCTTGCTTGCCGCCCCTCAATGTTCAGGTCTGTTTGCTTACACTGGCTAACATGTAGTAAGTACTCTGCAGATTTGCTGTTACTACGTGTACTATCCTTGACTTGCGTGAGCCGGCCGATGCCTGTATCGCTGTAACCACAAGCATTGTCAAGGATTTTCAATCTGATCTTTAACATTCTC]

[+] EMBL AK072544             [GAATTTGGAGAAAAGTGCAGGTGGAATCAAGATTGTCCGGGTTGAAAAGGCTGTTGAGCCAAGAAAAGAGTTTGATGAAACTGCAAAAGCAAGTGGTGGAGCGACACGAAACACATTGCCCCTTTTTGATAGTATTGCCAAAGAGAATTTAATGAGGCCCTCAATTTTTCGGGAAACTAAGATGCAGCACATGGCTGCTGAGGCAGCTGTGTTGCTATCCAAGGAATCCGATGACATGAGGAGTTGTGCCATGTCATTAGGCTCATCTGGCTTGCATGATAAGGAGCAGGAGTCTTCGCTGGAATCAGAAGGTGGCTGTGAAGAAGATGATGATGATGACATGGATAGTGAATACTTGGCATATACCAGAGATAGTACTAAAACGGCAACTAATGATGGTGAATGTCTTACTCAAGAGGAGATGGCTGGATCATCAGGGAATCAGAAGCCACTATCTTCACTGGACTTCACAACAGGTTGTGATGACATGCCATGTTCCGATGTCCATCACCATTCACTGGGAAATAGTGAACTGGAAAATGACGATACCACTAAGTCGTGTGCTTGTTCTTTCTGTCTTAAGGCTGCATTCATGTGGACCGATCTCCATTATCAGGACACAAGGGGACGGCTTGCTGCATTGAAGAAGAGCATAAAGTTCGCTAGATTGCTGGGCAAGAGAAGCCAAGGAGATGAATATTCTGTTAATGCAGGCAGATACAACTTGAAACGGGTTGCAGAGATGGAGTTTGAGCTATATCAACAGCAAAGATCACTCTTCCTTCATACAGAAAATGTCCTTATCCGTGAGAGCGCACAGCTTCATTCATCTCTTGTGAAGTTAAAGG AATTCAGAGAGAACTGCAAGACAGATCTCGAGACGGCTAGCAGTTCGTTGTTGGGAAAATGAATCTTTCATGGTTGTGCTGTTAAACTGCTTTTGCCTGGGATTCTTCAGATCAGCTGGGCCAGTTTGAGTCAAGTTGTGCATTGAGATTGGTTGATTGCTAGGAAGATTAGTGGTTATTGCCAGTCAGGAAGTTTGGTTATAGTGATGGTACTACCTATATGCAGTGTTCAGCATCTTTGTTTGTAAAAATCGTGTGGGAAGGTCGGAACTCCAAGTTAGCGACATGATTCTCCTCAGTTGTAACTGGCAGTTAGCTTGCGCCATGTGGTATCTGTATGATGTTTCCTGCTCCCAAGCATAATGGTGGAAGAACGATGATTTGACTTCTTTTTTTTCTTGCTTGCCGCCCCTCAATGTTCAGGTCTGTTTGCTTACACTGGCTAACATGTAGTAAGTACTCTGCAGATTTGCTGTTACTACGTGTACTATCCTTGACTTGCGTGAGCCGGCCGATGCCTGTATCGCTGTAACCACAAGCATTGTCAAGGATTTTCAATCTGATCTTTAACATTCTC]
[+] EMBL AU062544             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        caanCACCNTTNACTNGNAAATAGTNAACTGGAAAATNACGATACCACTAANTNGTGTNCNTATACTNNNTATNTTAAGGCTGCATTCATGTGGACCGATCTCCATTATCAGGACACAAGGGGACGGCTTGCTGCATTGAAGAAGAGCATAAAGTTCGCTAGATTNCTGGGCAAGAGAAGCCAAGGAGATGAATATTCTGTTAATGCAGGCAGATACAACTTGAAACGGGCTGCAGAGATGGAGTTTNAGCTATATCAACAGCAANGATCACTCTTCCTTCATACAGAAAATGTCCTTATCCGTGAGAGCGCACAGCTTCATTCATCTCTTGTGAAGTTAAAGGNAATTCAGAGNGAACTGCAGGNCAGATCTCGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_534#0 GAATTTGGAGAAAAGTGCAGGTGGAATCAAGATTGTCCGGGTTGAAAAGGCTGTTGAGCC AAGAAAAGAGTTTGATGAAACTGCAAAAGCAAGTGGTGGAGCGACACGAAACACATTGCC CCTTTTTGATAGTATTGCCAAAGAGAATTTAATGAGGCCCTCAATTTTTCGGGAAACTAA GATGCAGCACATGGCTGCTGAGGCAGCTGTGTTGCTATCCAAGGAATCCGATGACATGAG GAGTTGTGCCATGTCATTAGGCTCATCTGGCTTGCATGATAAGGAGCAGGAGTCTTCGCT GGAATCAGAAGGTGGCTGTGAAGAAGATGATGATGATGACATGGATAGTGAATACTTGGC ATATACCAGAGATAGTACTAAAACGGCAACTAATGATGGTGAATGTCTTACTCAAGAGGA GATGGCTGGATCATCAGGGAATCAGAAGCCACTATCTTCACTGGACTTCACAACAGGTTG TGATGACATGCCATGTTCCGATGTCCATCACCATTCACTGGGAAATAGTGAACTGGAAAA TGACGATACCACTAAGTCGTGTGCTTGTTCTTTCTGTCTTAAGGCTGCATTCATGTGGAC CGATCTCCATTATCAGGACACAAGGGGACGGCTTGCTGCATTGAAGAAGAGCATAAAGTT CGCTAGATTGCTGGGCAAGAGAAGCCAAGGAGATGAATATTCTGTTAATGCAGGCAGATA CAACTTGAAACGGGTTGCAGAGATGGAGTTTGAGCTATATCAACAGCAAAGATCACTCTT CCTTCATACAGAAAATGTCCTTATCCGTGAGAGCGCACAGCTTCATTCATCTCTTGTGAA GTTAAAGGAATTCAGAGAGAACTGCAAGACAGATCTCGAGACGGCTAGCAGTTCGTTGTT GGGAAAATGAATCTTTCATGGTTGTGCTGTTAAACTGCTTTTGCCTGGGATTCTTCAGAT CAGCTGGGCCAGTTTGAGTCAAGTTGTGCATTGAGATTGGTTGATTGCTAGGAAGATTAG TGGTTATTGCCAGTCAGGAAGTTTGGTTATAGTGATGGTACTACCTATATGCAGTGTTCA GCATCTTTGTTTGTAAAAATCGTGTGGGAAGGTCGGAACTCCAAGTTAGCGACATGATTC TCCTCAGTTGTAACTGGCAGTTAGCTTGCGCCATGTGGTATCTGTATGATGTTTCCTGCT CCCAAGCATAATGGTGGAAGAACGATGATTTGACTTCTTTTTTTTCTTGCTTGCCGCCCC TCAATGTTCAGGTCTGTTTGCTTACACTGGCTAACATGTAGTAAGTACTCTGCAGATTTG CTGTTACTACGTGTACTATCCTTGACTTGCGTGAGCCGGCCGATGCCTGTATCGCTGTAA CCACAAGCATTGTCAAGGATTTTCAATCTGATCTTTAACATTCTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)