These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence [GTAACACCAAAAATTTATTAAATACGAATGACGTAACACCAAAAATTTTATAATAGTAGAGATTTAGACAAACCTGTTAAACTGGTAAAAAGGTCAGCTCGACCCAGCTCGACCCAACTGTGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAGTTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCAGCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCCTCTCCTCTCTCATCCCCTCTCTTCTCTCTCATCCCACCCGTGGAGCGGCGGCGCATGGAGCCGGCAGGATGGAGCGGGGCGGCGGCGGGCGGAGTGGGCCGATGATGAGGTAAACCGGTGGTGGGCGGAAAGGGGCGACGGCGAGGTAAACCGGCGGCGGGTGGAGAAGGCGAAAAGGGAGATGGCGGTGGAGACAACGGTGGCGCGATGGAAGGCATCAAAGGAGATGGGGAGCGCACTCCACGCCGTCGTGTCTCGTCGTCGCTGCTCCAAACACTGCTCCTCGTCCCCTC] [+] EMBL CB642644 [GTAACACCAAAAATTTATTAAATACGAATGACGTAACACCAAAAATTTTATAATAGTAGAGATTTAGACAAACCTGTTAAACTGGTAAAAAGGTCAGCTCGACCCAGCTCGACCCAACTGTGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAGTTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCAGCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCCTCTCCTCTCTCATCCCCTCTCTTCTCTCTCATCCCACCCGTGGAGCGGCGGCGCATGGAGCCGGCAGGATGGAGCGGGGCGGCGGCGGGCGGAGTGGGCCGATGATGAGGTAAACCGGTGGTGGGCGGAAAGGGGCGACGGCGAGGTAAACCGGCGGCGGGTGGAGAAGGCGAAAAGGGAGATGGCGGTGGAGACAACGGTGGCGCGATGGAAGGCATCAAAGGAGATGGGGAGCGCACTCCACGCCGTCGTGTCTCGTCGTCGCTGCTCCAAACACTGCTCCTCGTCCCCTC] [-] EMBL AU070980 [ TAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCAGCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCCTCTCCTCTCTCATCCCCTCTCTTCTCTCTCATCCCACCCGTGGAGCGGCGGCGNATGGAGCCGGNAGGATGGNGCGGGGCGGCGGCGGGCGGNGTGGGCCGATGATGAGGTAGACCGGTGGTGGGCGGAGAGGGGCGACGGCGAGGTAGACCGGCGGCGGGTGGAGAAGGCGAAAAGGGAGATGGCGGTGGAGACAACGGCGG ] consensusID : consensus_5341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [TTNTTTTTTNTCGACCCAACTGTGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGTCCCTCAACTTGTCATCGAGTTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCANCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCNTCTCCTCTCTCATNCCCTCT] [-] EMBL AU078150 [TTNTTTTTTNTCGACCCAACTGTGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGTCCCTCAACTTGTCATCGAGTTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAACCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCANCTGACTCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCGATCNTCTCCTCTCTCATNCCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5341#0 GTAACACCAAAAATTTATTAAATACGAATGACGTAACACCAAAAATTTTATAATAGTAGA 60 consensus_5341#1 ------------------------------------------------------------ consensus_5341#0 GATTTAGACAAACCTGTTAAACTGGTAAAAAGGTCAGCTCGACCCAGCTCGACCCAACTG 120 consensus_5341#1 --------------------------------------TTNTTTTTTNTCGACCCAACTG 22 * ************ consensus_5341#0 TGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAG 180 consensus_5341#1 TGACGTCGACCATTTAATACTGGAAAAAGTACACCGAAG-TCCCTCAACTTGTCATCGAG 81 *************************************** ******************** consensus_5341#0 TTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAA 240 consensus_5341#1 TTACAAGATCGTCCCCTAACCGCAAAACACCGGATGTAGCGCATCCTTCATCTTATAAAA 141 ************************************************************ consensus_5341#0 CCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCAGCTGAC 300 consensus_5341#1 CCAGTGCAAAGTAGGTCCCTCGGCGATTTTGACTCCAGTTTTGTCCACGTGGCANCTGAC 201 ****************************************************** ***** consensus_5341#0 TCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCG 360 consensus_5341#1 TCACGGTGGGACCCACGTGGCCCCCACCCGTCAGCCTCTTCATCCCCTCCCCTCTCTCCG 261 ************************************************************ consensus_5341#0 ATCCTCTCCTCTCTCATCCCCTCTCTTCTCTCTCATCCCACCCGTGGAGCGGCGGCGCAT 420 consensus_5341#1 ATCNTCTCCTCTCTCATNCCCTCT------------------------------------ 285 *** ************* ****** consensus_5341#0 GGAGCCGGCAGGATGGAGCGGGGCGGCGGCGGGCGGAGTGGGCCGATGATGAGGTAAACC 480 consensus_5341#1 ------------------------------------------------------------ consensus_5341#0 GGTGGTGGGCGGAAAGGGGCGACGGCGAGGTAAACCGGCGGCGGGTGGAGAAGGCGAAAA 540 consensus_5341#1 ------------------------------------------------------------ consensus_5341#0 GGGAGATGGCGGTGGAGACAACGGTGGCGCGATGGAAGGCATCAAAGGAGATGGGGAGCG 600 consensus_5341#1 ------------------------------------------------------------ consensus_5341#0 CACTCCACGCCGTCGTGTCTCGTCGTCGCTGCTCCAAACACTGCTCCTCGTCCCCTC 657 consensus_5341#1 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||