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Oryza sativa
cluster # 5358 cluster # 5358       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5358#0 length = 1367 sequences # 2  
consensus_5358#1 length = 577 sequences # 1  

consensusID : consensus_5358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1367
fasta sequence
                              [TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCCGCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATATTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTGAGTTCTGTGTAAGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGGAAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCTTGAAAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCACTTGATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC]

[+] EMBL AK073408             [TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCCGCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATATTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTGAGTTCTGTGTAAGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGGAAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCTTGAAAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCACTTGATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC]
[+] EMBL CA998921             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTCTCCTGCCCCCGCAATCAACAACAGTATCAAGATGGAAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTCTCCCAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCC                                                                                                                               ]


>consensus_5358#0 TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCC GCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGC CGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCA AGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCG GGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTG AGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCAT TGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGT TTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATA TTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTG AGTTCTGTGTAAGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGGAAG TTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCA AGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGG AACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTG AAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGG TGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGT TCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCA AGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAA ACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAG GGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTG CTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGA CCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCTTGA AAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCACTT GATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC



consensusID : consensus_5358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence
                              [CAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGGTATGCAAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTGACCAGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCTCACTCTGCAGTTGTATCAGAGATGATTTCTTCTGAATGATCTGTCTGTGTAATAGTATACAACAGTGTAATATAAAGAATATCCCATTTGATCTACAATATTGACTTAACTGAAAATAATT]

[+] EMBL CF303879             [CAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGGTATGCAAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTGACCAGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCTCACTCTGCAGTTGTATCAGAGATGATTTCTTCTGAATGATCTGTCTGTGTAATAGTATACAACAGTGTAATATAAAGAATATCCCATTTGATCTACAATATTGACTTAACTGAAAATAATT]


>consensus_5358#1 CAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGC GGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCAT ATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAA GATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCAC TTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATT CGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAG GTATGCAAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTGAC CAGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCTCACTCTGCAGTTGTATCAGAGATG ATTTCTTCTGAATGATCTGTCTGTGTAATAGTATACAACAGTGTAATATAAAGAATATCC CATTTGATCTACAATATTGACTTAACTGAAAATAATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5358#0      TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCC 60
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      GCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGC 120
consensus_5358#1      -------------------------------------------------------CAAGC 5
                                                                             *****

consensus_5358#0      CGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCA 180
consensus_5358#1      CGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCA 65
                      ************************************************************

consensus_5358#0      AGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCG 240
consensus_5358#1      AGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCG 125
                      ************************************************************

consensus_5358#0      GGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTG 300
consensus_5358#1      GGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAAGATTG 185
                      *****************************    * *************************

consensus_5358#0      AGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCAT 360
consensus_5358#1      AGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCAT 245
                      ************************************************************

consensus_5358#0      TGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGT 420
consensus_5358#1      TGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGT 305
                      ************************************************************

consensus_5358#0      TTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATA 480
consensus_5358#1      TTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGGTATG 365
                      ******************************************************* *** 

consensus_5358#0      TTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTG 540
consensus_5358#1      C---AAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTG-ACC 421
                           ** * ** * *     *   * ****     *     * *** *    **     

consensus_5358#0      AGTTCTGTGTA---AGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGG 597
consensus_5358#1      AGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCT-CACTCTGCAGTTGTATCAGAGATG 480
                      *** ******    * ** * *    *      *  ** **  **   ******     *

consensus_5358#0      AAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATC 657
consensus_5358#1      ATTTC----TTCTGAATGATCTGTCTGTGTAATA-GTATACAACA-------GTGTAATA 528
                      *  *     **  * **    *   * *  * *  * ***** **       **   ** 

consensus_5358#0      TCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACA 717
consensus_5358#1      TAAAGAATATCCCATTTG-----ATCTACAATATTG--ACTTAACTGAAAATAATT---- 577
                      * *** ** *     ***     ******  * **        * * ** ****      

consensus_5358#0      TGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGA 777
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      CTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCC 837
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      CGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACA 897
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      AGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACT 957
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      TCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTC 1017
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      CAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGT 1077
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      TAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTG 1137
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      CTGCTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGT 1197
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      AGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCT 1257
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      TGAAAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCA 1317
consensus_5358#1      ------------------------------------------------------------
                                                                                  

consensus_5358#0      CTTGATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC 1367
consensus_5358#1      --------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)