These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1367 fasta sequence [TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCCGCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATATTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTGAGTTCTGTGTAAGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGGAAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCTTGAAAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCACTTGATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC] [+] EMBL AK073408 [TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCCGCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATATTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTGAGTTCTGTGTAAGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGGAAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCTTGAAAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCACTTGATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC] [+] EMBL CA998921 [ CTCTCCTGCCCCCGCAATCAACAACAGTATCAAGATGGAAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTCTCCCAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCC ] consensusID : consensus_5358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [CAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGGTATGCAAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTGACCAGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCTCACTCTGCAGTTGTATCAGAGATGATTTCTTCTGAATGATCTGTCTGTGTAATAGTATACAACAGTGTAATATAAAGAATATCCCATTTGATCTACAATATTGACTTAACTGAAAATAATT] [+] EMBL CF303879 [CAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGGTATGCAAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTGACCAGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCTCACTCTGCAGTTGTATCAGAGATGATTTCTTCTGAATGATCTGTCTGTGTAATAGTATACAACAGTGTAATATAAAGAATATCCCATTTGATCTACAATATTGACTTAACTGAAAATAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5358#0 TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCC 60 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 GCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGC 120 consensus_5358#1 -------------------------------------------------------CAAGC 5 ***** consensus_5358#0 CGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCA 180 consensus_5358#1 CGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCA 65 ************************************************************ consensus_5358#0 AGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCG 240 consensus_5358#1 AGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCG 125 ************************************************************ consensus_5358#0 GGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTG 300 consensus_5358#1 GGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAAGATTG 185 ***************************** * ************************* consensus_5358#0 AGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCAT 360 consensus_5358#1 AGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCAT 245 ************************************************************ consensus_5358#0 TGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGT 420 consensus_5358#1 TGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGT 305 ************************************************************ consensus_5358#0 TTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATA 480 consensus_5358#1 TTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGGTATG 365 ******************************************************* *** consensus_5358#0 TTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTG 540 consensus_5358#1 C---AAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTG-ACC 421 ** * ** * * * * **** * * *** * ** consensus_5358#0 AGTTCTGTGTA---AGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGG 597 consensus_5358#1 AGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCT-CACTCTGCAGTTGTATCAGAGATG 480 *** ****** * ** * * * * ** ** ** ****** * consensus_5358#0 AAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATC 657 consensus_5358#1 ATTTC----TTCTGAATGATCTGTCTGTGTAATA-GTATACAACA-------GTGTAATA 528 * * ** * ** * * * * * * ***** ** ** ** consensus_5358#0 TCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACA 717 consensus_5358#1 TAAAGAATATCCCATTTG-----ATCTACAATATTG--ACTTAACTGAAAATAATT---- 577 * *** ** * *** ****** * ** * * ** **** consensus_5358#0 TGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGA 777 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 CTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCC 837 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 CGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACA 897 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 AGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACT 957 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 TCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTC 1017 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 CAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGT 1077 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 TAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTG 1137 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 CTGCTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGT 1197 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 AGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCT 1257 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 TGAAAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCA 1317 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 CTTGATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC 1367 consensus_5358#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||