These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1543 fasta sequence [AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGACGACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCGGTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACCCGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGCGCCGCCGCCGCGGCGCTCTCCATCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACGCAGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGTTAACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTTTATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGTACTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAAATATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTTTAATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATTTAGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCAGTGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCTGGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAATGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAACCTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGGCCTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCCATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATCTTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAAGCAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT] [+] EMBL AK107672 [AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGACGACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCGGTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACCCGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGCGCCGCCGCCGCGGCGCTCTCCATCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACGCAGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGTTAACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTTTATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGTACTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAAATATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTTTAATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATTTAGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCAGTGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCTGGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAATGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAACCTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGGCCTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCCATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATCTTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAAGCAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT] consensusID : consensus_5360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence [TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATC] [+] EMBL CA998931 [TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATC] [+] EMBL CA998928 [TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5360#0 AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGAC 60 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 GACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCG 120 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 GTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACC 180 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 CGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGC 240 consensus_5360#1 -----------------------------------------------------------T 1 consensus_5360#0 GCCGCCGCCGCGGCGCTCTCCAT-CCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAAT 299 consensus_5360#1 GCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAAT 61 ** * * ** ************************************ consensus_5360#0 TGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCT 359 consensus_5360#1 TGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCT 121 ************************************************************ consensus_5360#0 GACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACC 419 consensus_5360#1 GACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACC 181 ************************************************************ consensus_5360#0 ATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAA 479 consensus_5360#1 ATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAA 241 ************************************************************ consensus_5360#0 AATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTT 539 consensus_5360#1 AATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTT 301 ************************************************************ consensus_5360#0 TACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACG 599 consensus_5360#1 TACCGACTTCCATC---------------------------------------------- 315 ************** consensus_5360#0 CAGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGT 659 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 TAACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTT 719 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 TATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGT 779 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 ACTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAA 839 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 ATATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTT 899 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 TAATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATT 959 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 TAGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCA 1019 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 GTGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCT 1079 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 GGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGG 1139 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 GGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAA 1199 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 TGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAA 1259 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 CCTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGG 1319 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 CCTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCC 1379 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 ATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATC 1439 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 TTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAA 1499 consensus_5360#1 ------------------------------------------------------------ consensus_5360#0 GCAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT 1543 consensus_5360#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||