cluster # 5360

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5360 cluster # 5360 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5360#0 length = 1543 sequences # 1

consensus_5360#1 length = 315 sequences # 2

consensusID : consensus_5360#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1543
fasta sequence

                              [AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGACGACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCGGTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACCCGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGCGCCGCCGCCGCGGCGCTCTCCATCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACGCAGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGTTAACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTTTATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGTACTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAAATATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTTTAATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATTTAGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCAGTGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCTGGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAATGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAACCTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGGCCTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCCATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATCTTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAAGCAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT]

[+] EMBL AK107672             [AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGACGACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCGGTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACCCGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGCGCCGCCGCCGCGGCGCTCTCCATCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACGCAGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGTTAACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTTTATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGTACTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAAATATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTTTAATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATTTAGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCAGTGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCTGGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAATGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAACCTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGGCCTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCCATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATCTTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAAGCAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT]




>consensus_5360#0
AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGAC
GACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCG
GTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACC
CGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGC
GCCGCCGCCGCGGCGCTCTCCATCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATT
GTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTG
ACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCA
TCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAA
ATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTT
ACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACGC
AGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGTT
AACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTTT
ATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGTA
CTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAAA
TATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTTT
AATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATTT
AGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCAG
TGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCTG
GCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGGG
GTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAAT
GTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAAC
CTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGGC
CTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCCA
TAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATCT
TGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAAG
CAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT

consensusID : consensus_5360#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 315
fasta sequence

                              [TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATC]

[+] EMBL CA998931             [TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATC]
[+] EMBL CA998928             [TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGAC                                                                                                                                                               ]




>consensus_5360#1
TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAA
TTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATC
TGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAAC
CATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCA
AAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACT
TTACCGACTTCCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5360#0      AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGAC 60
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      GACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCG 120
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      GTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACC 180
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      CGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGC 240
consensus_5360#1      -----------------------------------------------------------T 1
                                                                                  

consensus_5360#0      GCCGCCGCCGCGGCGCTCTCCAT-CCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAAT 299
consensus_5360#1      GCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAAT 61
                      **    *         *    ** ************************************

consensus_5360#0      TGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCT 359
consensus_5360#1      TGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCT 121
                      ************************************************************

consensus_5360#0      GACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACC 419
consensus_5360#1      GACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACC 181
                      ************************************************************

consensus_5360#0      ATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAA 479
consensus_5360#1      ATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAA 241
                      ************************************************************

consensus_5360#0      AATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTT 539
consensus_5360#1      AATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTT 301
                      ************************************************************

consensus_5360#0      TACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACG 599
consensus_5360#1      TACCGACTTCCATC---------------------------------------------- 315
                      **************                                              

consensus_5360#0      CAGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGT 659
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      TAACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTT 719
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      TATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGT 779
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      ACTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAA 839
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      ATATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTT 899
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      TAATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATT 959
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      TAGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCA 1019
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      GTGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCT 1079
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      GGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGG 1139
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      GGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAA 1199
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      TGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAA 1259
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      CCTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGG 1319
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      CCTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCC 1379
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      ATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATC 1439
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      TTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAA 1499
consensus_5360#1      ------------------------------------------------------------
                                                                                  

consensus_5360#0      GCAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT 1543
consensus_5360#1      --------------------------------------------