cluster # 5364

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Oryza sativa
cluster # 5364 cluster # 5364 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5364#0 length = 916 sequences # 3

consensusID : consensus_5364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 916
fasta sequence

                              [AAGTCTTCTTTATAAAGCTTTGGTGACCACCCGGAACCATCACACCTAAGTTTCTGATATCCCTAGTGTTGTTATTAGAATGGTAAAGTTACTCATTGTTTAAAAAAAATAAAAAAGAATGTAGGTACTCTCTAGCTTCATAATATACGATAAAGTCTTTATCAACTCTAGAGCTGCAAGCATGCCAAGGTCAGTAAATTGGTGTGTAGAATGATTGAACCTTACATTAACTGCTGTGTTTTACTGCTCTCTGCAGATGTTTATCTCGCTGGAACACGTCATGCTGATCTTTGGGATGGGCTTGTACGGGCTGTTCATCAGCAATACTTCTACTGATGTTCCTTCTGAGTCTGACAGAGCTCTGCAGGGATCATCCTTATTTGGGATGTTTGCTTTAAAGGAAAGACCAAGTGGATGAAGATTACCTCCCCTGGACGAACTGAAAACCCAAGTAGGGCATGTCATCGTCATGATCCTTCTGGTGAAGATGTTCGAGAGGAGC-AAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGCTACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCACAACCTTCACAGGCCTGAACAGGATGACTCGGTTATGCCAAACTTGTAAAGTCATCGAGAGTTAGGAAAAGAAAAAAAAATCATACCACCATCAAATCATGAGCTCATGATCTGTAGCACCGGATGGAATTGTATTAGTACCATCCTGATGTGCCCAAAGCA-GGGTAAAAAAAAGAGAGCAAAGAACCCCTGAACC-ATCTCTCTGTGAAAAGGCAAGATCAAGGACAGCTTCAAATATAGCTAC-AAAAGAATTAAAGCCCTGAAAAAAAATATAGAATTCTTGGTATATTACTATATTATGTTAATTAAGGTNTAAAAAAAAAAAAAAA]

[+] EMBL BI807583             [AAGTCTTCTTTATAAAGCTTTGGTGACCACCCGGAACCATCACACCTAAGTTTCTGATATCCCTAGTGTTGTTATTAGAATGGTAAAGTTACTCATTGTTTAAAAAAAATAAAAAAGAATGTAGGTACTCTCTAGCTTCATAATATACGATAAAGTCTTTATCAACTCTAGAGCTGCAAGCATGCCAAGGTCAGTAAATTGGTGTGTAGAATGATTGAACCTTACATTAACTGCTGTGTTTTACTGCTCTCTGCAGATGTTTATCTCGCTGGAACACGTCATGCTGATCTTTGGGATGGGCTTGTACGGGCTGTTCATCAGCAATACTTCTACTGATGTTCCTTCTGAGTCTGACAGAGCTCTGCAGGGATCATCCTTATTTGGGATGTTTGCTTTAAAGGAAAGACCAAGTGGATGAAGATTACCTCCCCTGGACGAACTGAAAACCCAAGTAGGGCATGTCATCGTCATGATCCTTCTGGTGAAGATGTTCGAGAGGAGC AAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGCTACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCAC ACCTTCACAGGCCTGAACAGGATGACTCGGTTATGCCCAACTTGTAAAGTCATCGAGAGTTA  AAAAAAAAA                                                                                                                                                                                                                                                                 ]
[+] EMBL BI799145             [                                                                                                                                                                                                                                                                                                                                                                                                                                      TACCT  CCTGGACGAACTGAAAA CCAAGTAGGGCATGTCATCGTCATGATCCTTCTGGTGAAGATGTTCGAGAGGAGC AAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGCTACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCACAACCTTCACAGGCCTGAACAGGATGACTCGGTTATGCCAAACTTGTAAAGTCATCGAGAGTTAGGAAAAGAAAAAAAAATCATACCACCATCAAATCATGAGCTCATGATCTGTAGCACCGGATGGAATTGTATTAGTACCATCCTGATGTGCCCAAAGCACGGGTAAAAAAAAGAGAGCAAAGAACCCCTGAACC ATCTCTCTGTGAAAAGGCAAGATCAAGGACAGCTTCAAATATAGCTAC AAAAGAATTAAAGCCCTGAAAAAAAA                                                           ]
[+] EMBL AU173917             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTGAAGATGTTCGAGAGGAGCAAAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGCTACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCACAACCTTCACAGGCCTGAACAGGATGACTCGGTTATGCCAAACTTGTAAAGTCATCGAGAGTTAGGAAAAGAAAAAAAAATCATACCCCCATCAAATCATGAGCTCATGATCTGTAGCNCCGGATGGAATTGTATTAGTACCATCCTGATGTGCCAAAAGCA GGGTAAAAAAAAGAGAGCAAAGAACCCCTGAACCAATCTCTNTGTGAAAAGGCAAGATCAAGGACAGCTTCAAATATAGCTACAAAAAGAATTAAAGCNCTGAAATTTTGTATAGAATTCTTGGTATATTACTATATTATGTTAATTAAGGTNTAAAAAAAAAAAAAAA]




>consensus_5364#0
AAGTCTTCTTTATAAAGCTTTGGTGACCACCCGGAACCATCACACCTAAGTTTCTGATAT
CCCTAGTGTTGTTATTAGAATGGTAAAGTTACTCATTGTTTAAAAAAAATAAAAAAGAAT
GTAGGTACTCTCTAGCTTCATAATATACGATAAAGTCTTTATCAACTCTAGAGCTGCAAG
CATGCCAAGGTCAGTAAATTGGTGTGTAGAATGATTGAACCTTACATTAACTGCTGTGTT
TTACTGCTCTCTGCAGATGTTTATCTCGCTGGAACACGTCATGCTGATCTTTGGGATGGG
CTTGTACGGGCTGTTCATCAGCAATACTTCTACTGATGTTCCTTCTGAGTCTGACAGAGC
TCTGCAGGGATCATCCTTATTTGGGATGTTTGCTTTAAAGGAAAGACCAAGTGGATGAAG
ATTACCTCCCCTGGACGAACTGAAAACCCAAGTAGGGCATGTCATCGTCATGATCCTTCT
GGTGAAGATGTTCGAGAGGAGCAAATGGTGAAGATAACAACGGGGTTGGACCTGCTGAGC
TACTCGGTCTGCATCTTCCTGTCGTCCGCTTCACTGTACATCCTGCACAACCTTCACAGG
CCTGAACAGGATGACTCGGTTATGCCAAACTTGTAAAGTCATCGAGAGTTAGGAAAAGAA
AAAAAAATCATACCACCATCAAATCATGAGCTCATGATCTGTAGCACCGGATGGAATTGT
ATTAGTACCATCCTGATGTGCCCAAAGCAGGGTAAAAAAAAGAGAGCAAAGAACCCCTGA
ACCATCTCTCTGTGAAAAGGCAAGATCAAGGACAGCTTCAAATATAGCTACAAAAGAATT
AAAGCCCTGAAAAAAAATATAGAATTCTTGGTATATTACTATATTATGTTAATTAAGGTN
TAAAAAAAAAAAAAAA

clustalw multiple alignements is not computed in this case