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Oryza sativa
cluster # 5369 cluster # 5369       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5369#0 length = 1401 sequences # 3  

consensusID : consensus_5369#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1401
fasta sequence
                              [TCGTGAACAGCGGGCAAAAAATGTCTCAAGTACTATGGAGCGGGAAAAAGCAGAGCCCCTCAATCAAGCTAGTGAACTGAAAAAAGCACAAGCTGGTAAGACGATTGGATGCCCGAAGAGAAAAAGGAGCAGCAAGAATGCTGGTGAGAATAAGAGGAAAAATAAGGGCTTTCCGAGTTCTCCAAATGAAGGACTCTATCTTAGGCGTAGCAAGCGCTTGACGAAACAACCAGAACAACCAATAAATGATGATCCAGTCCAGCAGCCAGCTGCTTCTCCAAACCAATATAATTCTGATCCTCCAGACAGCAGTACAAAAAGCCAAAAAAGCTTCAGGTTCTCGTAGCTCCAATAGTCATGCAGAGTCAGAGGAGGAAGATGCTACAGAAGAGCCAAAGGACAATCAGACAGAAAAGGTAAATGAGGACGAGGACCCTTTACTGTGGAAACCCTTCCCCCCTGCATGGATGCATCCGAATTGGTGGGAGAGATTGTGTGAATATTGGGCCAAAGGAGAAGTCTTGCAGATGTCTCTGAAGTATAGGAAGAATCGGTTTGTTGGAGGTCGTGCTCATCACACATCAGGTTCTCGGAGCTTTGCCATGCAACGGCAGCTTATGGTCATAGAGAATGGTGGGAAGCCAGTGTCAGAACTTGAGATATTCAACAAGACCCATAAGTTTAATGGTGGCACAGGAGAATTTGTCAGTGAGAAAGCGAAACGGATTGTGGAGGGTTTCAAGAAGCGAATGGAGGAGGCTGGTGATAAACCTGCAGATCCCGATGCTGCATGGATACAGCAGGTGGGGGGCCGGAACCGTGGGAGGTACTATGGACTCACTGGCACCATCGACAAGGCCAAAATCGCGGAGATAGCAAAGTCCATCCCTGGTAAAAGGGGTCAGCAGAAGTTCTCGCAGGAGGAGGTCCAACAGATGATCAATCATGCTCTGCAAGGTTTAAATCAATCCTGGGAGGAGAAGTTTAAATCCCTGGAGCAAAGTGTGCGTGGTGCGCCATTGTTAGGTGTTGATCATGAGCATGCCCCTGGGTCTTCGGCAGCTGGAGGAGATGTTCAACAGGACCAGTCAAAACATCAGGACGAATCAGACAAACAGCATGTTGAAAGGCGTCAATCTGCGAGACACCACGACGACGATGACGACGACGATGACGAAGATTATGAGGTTGAGGAGG-AGGAAGTGGTGTCTACAAGCGATTGATCTGCCTCGCCGCGTAGAATTTTGGCCATGTAATATATAAACCTGCGTCTAATGATGTTTCCCTGTCCCTGGTCTTTTGGAGAGATGCTGAAATGCACTGCCAGCAGTGGTATTTCCCGCTGCTACGCTGACTCCGATCGATAGTGAAACTCATCTCTTGGNTNTTGACCCGAAAAAA]

[+] EMBL AK062284             [TCGTGAACAGCGGGCAAAAAATGTCTCAAGTACTATGGAGCGGGAAAAAGCAGAGCCCCTCAATCAAGCTAGTGAACTGAAAAAAGCACAAGCTGGTAAGACGATTGGATGCCCGAAGAGAAAAAGGAGCAGCAAGAATGCTGGTGAGAATAAGAGGAAAAATAAGGGCTTTCCGAGTTCTCCAAATGAAGGACTCTATCTTAGGCGTAGCAAGCGCTTGACGAAACAACCAGAACAACCAATAAATGATGATCCAGTCCAGCAGCCAGCTGCTTCTCCAAACCAATATAATTCTGATCCTCCAGACAGCAGTACAAAAAGCCAAAAAAGCTTCAGGTTCTCGTAGCTCCAATAGTCATGCAGAGTCAGAGGAGGAAGATGCTACAGAAGAGCCAAAGGACAATCAGACAGAAAAGGTAAATGAGGACGAGGACCCTTTACTGTGGAAACCCTTCCCCCCTGCATGGATGCATCCGAATTGGTGGGAGAGATTGTGTGAATATTGGGCCAAAGGAGAAGTCTTGCAGATGTCTCTGAAGTATAGGAAGAATCGGTTTGTTGGAGGTCGTGCTCATCACACATCAGGTTCTCGGAGCTTTGCCATGCAACGGCAGCTTATGGTCATAGAGAATGGTGGGAAGCCAGTGTCAGAACTTGAGATATTCAACAAGACCCATAAGTTTAATGGTGGCACAGGAGAATTTGTCAGTGAGAAAGCGAAACGGATTGTGGAGGGTTTCAAGAAGCGAATGGAGGAGGCTGGTGATAAACCTGCAGATCCCGATGCTGCATGGATACAGCAGGTGGGGGGCCGGAACCGTGGGAGGTACTATGGACTCACTGGCACCATCGACAAGGCCAAAATCGCGGAGATAGCAAAGTCCATCCCTGGTAAAAGGGGTCAGCAGAAGTTCTCGCAGGAGGAGGTCCAACAGATGATCAATCATGCTCTGCAAGGTTTAAATCAATCCTGGGAGGAGAAGTTTAAATCCCTGGAGCAAAGTGTGCGTGGTGCGCCATTGTTAGGTGTTGATCATGAGCATGCCCCTGGGTCTTCGGCAGCTGGAGGAGATGTTCAACAGGACCAGTCAAAACATCAGGACGAATCAGACAAACAGCATGTTGAAAGGCGTCAATCTGCGAGACACCACGACGACGATGACGACGACGATGACGAAGATTATGAGGTTGAGGAGG AGGAAGTGGTGTCTACAAGCGATTGATCTGCCTCGCCGCGTAGAATTTTGGCCATGTAATATATAAACCTGCGTCTAATGCTGTTTCCCTGTCCCTGGTCTTTTGGAGAGATGCTGAAATGCACTGCCAGCAGTGGTATTTCCCGCTGCTACGCTGACTCCGATCGATAGTGAAACTCATCTCTTGG                 ]
[+] EMBL CA763881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    caAGGGGGGGGTCCAACAGATGATCAATCATGCTCTGCAAGGTTTAAATCAATCCTGGGAGGAGAAGTTTAAATCCCTGGAGCAAAGTGTGCGTGGTGCGCCATTGTTAGGTGTTGATCATGAGCATGCCCCTGGGTCTTCGGCAGCTGGAGGAGATGTTCAACAGGACCAGTCAAAACATCAGGACGAATCAGACAAACAGCATGTTGAAAGGCGTCAATCTGCGAGACACCACGACGACGATGACGACGACGATGACGAAGATTATGAGGTTGAGGAGGNAGGAAGTGGTGTCTACAAGCGATTGATCTGCCTCGCCGCGTAGAATTTTGGCCATGTAATATATAAACCTGCGTCTAATGATGTTTCCCTGTCCCTGGTCTTTTGGAGGGATGCTGAAATGC                                                                                  ]
[+] EMBL BQ906470             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AACAGGACCAGTCAAAACATCAGGACGAATCAGACAAACAGCATGTTGAAAGGCGTCAATCTGCGAGACACCACGACGACGATGACGACGACGATGACGAAGATTATGAGGTTGAGGAGG AGGAAGTGGTGTCTACAAGCGATTGATCTGCCTCGCCGCGTAGAATTTTGGCCATGTAATATATAAACCTGCGTCTAATGATGTTTCCCTGT CCTGGTCTTTTGGAGAGATGCTGAAATGCACTGCCAGCAGTGGTATTTCCCGCTGCTACGCTGACTCCGATCGATAGTGCCACTCATCTCTTGGNTNTTGACCCGAAAAAA]


>consensus_5369#0 TCGTGAACAGCGGGCAAAAAATGTCTCAAGTACTATGGAGCGGGAAAAAGCAGAGCCCCT CAATCAAGCTAGTGAACTGAAAAAAGCACAAGCTGGTAAGACGATTGGATGCCCGAAGAG AAAAAGGAGCAGCAAGAATGCTGGTGAGAATAAGAGGAAAAATAAGGGCTTTCCGAGTTC TCCAAATGAAGGACTCTATCTTAGGCGTAGCAAGCGCTTGACGAAACAACCAGAACAACC AATAAATGATGATCCAGTCCAGCAGCCAGCTGCTTCTCCAAACCAATATAATTCTGATCC TCCAGACAGCAGTACAAAAAGCCAAAAAAGCTTCAGGTTCTCGTAGCTCCAATAGTCATG CAGAGTCAGAGGAGGAAGATGCTACAGAAGAGCCAAAGGACAATCAGACAGAAAAGGTAA ATGAGGACGAGGACCCTTTACTGTGGAAACCCTTCCCCCCTGCATGGATGCATCCGAATT GGTGGGAGAGATTGTGTGAATATTGGGCCAAAGGAGAAGTCTTGCAGATGTCTCTGAAGT ATAGGAAGAATCGGTTTGTTGGAGGTCGTGCTCATCACACATCAGGTTCTCGGAGCTTTG CCATGCAACGGCAGCTTATGGTCATAGAGAATGGTGGGAAGCCAGTGTCAGAACTTGAGA TATTCAACAAGACCCATAAGTTTAATGGTGGCACAGGAGAATTTGTCAGTGAGAAAGCGA AACGGATTGTGGAGGGTTTCAAGAAGCGAATGGAGGAGGCTGGTGATAAACCTGCAGATC CCGATGCTGCATGGATACAGCAGGTGGGGGGCCGGAACCGTGGGAGGTACTATGGACTCA CTGGCACCATCGACAAGGCCAAAATCGCGGAGATAGCAAAGTCCATCCCTGGTAAAAGGG GTCAGCAGAAGTTCTCGCAGGAGGAGGTCCAACAGATGATCAATCATGCTCTGCAAGGTT TAAATCAATCCTGGGAGGAGAAGTTTAAATCCCTGGAGCAAAGTGTGCGTGGTGCGCCAT TGTTAGGTGTTGATCATGAGCATGCCCCTGGGTCTTCGGCAGCTGGAGGAGATGTTCAAC AGGACCAGTCAAAACATCAGGACGAATCAGACAAACAGCATGTTGAAAGGCGTCAATCTG CGAGACACCACGACGACGATGACGACGACGATGACGAAGATTATGAGGTTGAGGAGGAGG AAGTGGTGTCTACAAGCGATTGATCTGCCTCGCCGCGTAGAATTTTGGCCATGTAATATA TAAACCTGCGTCTAATGATGTTTCCCTGTCCCTGGTCTTTTGGAGAGATGCTGAAATGCA CTGCCAGCAGTGGTATTTCCCGCTGCTACGCTGACTCCGATCGATAGTGAAACTCATCTC TTGGNTNTTGACCCGAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)