These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 951 fasta sequence [TAATACAGAACCATCATCATATGTTACTCTGTTCTCCAATACACCTGGAAAGTTGACAAAGGAATTAGTAGACCTTAGAGATGAAGAATTTTCTTGTGGGAGGAATAGGGCTATTGATTTTGTTACATTTACCATGAAATATGGCTGTTTGAGTTACGAAGGGACCAATACTGGATGGAGCAAATCAGAAGTGCCAGTGCTCAGTTTGAAAAGTGATTCTGTTACCAATGATGCTCGACAAACAATAATATCAGTTGATACTAAGTCATCTACGCGTTGGTCACTGGCAATCAATAAACAAGAAATTGATGACTTCACAGTTCATGTGGATTCGGAGAACTTGGTTCCACTGGGTAATAAGAGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAAATTTCAGCTAACCCTTTTCTGGGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGAATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATGTGAATAGAGTTACACCGAAGGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTCTCCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTTTAACAGAATCATGTGATAGGGGCCTCAAACATACAGGATAGCCACGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAAAAAAAAAAAAGAAA] [+] EMBL AK071665 [TAATACAGAACCATCATCATATGTTACTCTGTTCTCCAATACACCTGGAAAGTTGACAAAGGAATTAGTAGACCTTAGAGATGAAGAATTTTCTTGTGGGAGGAATAGGGCTATTGATTTTGTTACATTTACCATGAAATATGGCTGTTTGAGTTACGAAGGGACCAATACTGGATGGAGCAAATCAGAAGTGCCAGTGCTCAGTTTGAAAAGTGATTCTGTTACCAATGATGCTCGACAAACAATAATATCAGTTGATACTAAGTCATCTACGCGTTGGTCACTGGCAATCAATAAACAAGAAATTGATGACTTCACAGTTCATGTGGATTCGGAGAACTTGGTTCCACTGGGTAATAAGAGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAAATTTCAGCTAACCCTTTTCTGGGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGAATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATGTGAATAGAGTTACACCGAAGGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTCTCCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTTTAACAGAATCATGTGATAGGGGCCTCAAACATACAGGATAGCCACGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCT ] [-] EMBL CA759541 [ CACTGGCAATCAATAAACAAGAAAGTGATGACTTCCCAGTTCATGTGGATTCGGAGAACTTGGTTCCCCTGGGTAATAAGAGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAAATTTCAGCTAACCCTTTTCTGGGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGAATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATGTGAATAGAGTTACACCGAAGGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTCTCCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCCCACCCCCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTTTAACAGAATCATGTGATAGGGGCCTCAAACATACAGGATAGCCCCGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAAAAAAAAAAAAGAAA] consensusID : consensus_5372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [TATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTGTTAACAGAATCATGTGATAGGCNCCCTCAAACATACAGGATAGCCACGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAGGATTGGCGNCNT] [+] EMBL BQ906468 [TATTTAGCCATACTTATTCTTTACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATCACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTTCCGTGTTAACAGAATCATGTGATAGGCNCCCTCAAACATACAGGATAGCCACGGGTTCAAATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAATGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAGGATTGGCGNCNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5372#0 TAATACAGAACCATCATCATATGTTACTCTGTTCTCCAATACACCTGGAAAGTTGACAAA 60 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 GGAATTAGTAGACCTTAGAGATGAAGAATTTTCTTGTGGGAGGAATAGGGCTATTGATTT 120 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 TGTTACATTTACCATGAAATATGGCTGTTTGAGTTACGAAGGGACCAATACTGGATGGAG 180 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 CAAATCAGAAGTGCCAGTGCTCAGTTTGAAAAGTGATTCTGTTACCAATGATGCTCGACA 240 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 AACAATAATATCAGTTGATACTAAGTCATCTACGCGTTGGTCACTGGCAATCAATAAACA 300 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 AGAAATTGATGACTTCACAGTTCATGTGGATTCGGAGAACTTGGTTCCACTGGGTAATAA 360 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 GAGCGAGATCGATGGGTGGCATACAATCCAGTTTGCTGGTGGTAAGGACTCACCAACAAA 420 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 ATTTCAGCTAACCCTTTTCTGGGCAAGTAATTCCAAGGATGCATTCCCAAAGCAAGTCGA 480 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 ATCAGAAGATCATTCTTTCTTACTAAAACTAAGAACGGATGTGAATAGAGTTACACCGAA 540 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 GGTTGGCAGGGTTCTCGAGAAGCTTCCAGGATGGTGTGCACCCTTTGGCAAGTCTACTTC 600 consensus_5372#1 ------------------------------------------------------------ consensus_5372#0 TCCTTATACATTGGCTTTCTTGACCGCTCTTCCTGTCAATATTTAGCCATACTTATTCTT 660 consensus_5372#1 ---------------------------------------TATTTAGCCATACTTATTCTT 21 ********************* consensus_5372#0 TACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATC 720 consensus_5372#1 TACCAGACTTAGGGTATTCGTAGTGTTTACTTTTTCTAATTTAGATATGCATATCCGATC 81 ************************************************************ consensus_5372#0 ACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTT 780 consensus_5372#1 ACACCACCACATAGTTTACACTTATAGCCAACAAATGTACACGAAAATTGCCAGCAACTT 141 ************************************************************ consensus_5372#0 CCGT-TTAACAGAATCATGTGATAGGGGCC-TCAAACATACAGGATAGCCACGGGTTCAA 838 consensus_5372#1 CCGTGTTAACAGAATCATGTGATAGGCNCCCTCAAACATACAGGATAGCCACGGGTTCAA 201 **** ********************* ** ***************************** consensus_5372#0 ATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAA 898 consensus_5372#1 ATATGTTTCTTACGAACGAGCAGTTTCATAGTTTCATGTGAAAATGCTGAGATGTAATAA 261 ************************************************************ consensus_5372#0 TGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAAAAAAAAAAAAGAAA 951 consensus_5372#1 TGGCTGTAATAAAGACTGATGCTTTGATTCCTCAAAAAGGATTGGCGNCNT-- 312 ************************************** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||