These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1974 fasta sequence [CGTCATTCCCGGCGCCGAATCCCCCCGAAACACACGATCCTTCCCGCGCCGCCGCTGAGGCGCCCTAACGCCGCCGTCTCCGGCCGCGCGACCACCTCCGATCACCGCCTCTCTCTCTCTCTCTCTCCACTGCTCCCCCGCGCATCGCCTCCACCATCGGGCCTACCTGCCCGCGCCGGCGCCGCCGATCAATCGCCGCCGCCGTCAGTCCTGCTCCTGCGGGCGATACCTAGCTGCTCCGGGGCGGCCATTTCCTCCGATTGCCCGCGCTGCCTCGTACCCTCTCCGCCACCGACCAGTCCCTTCCTTGAGTTCGTTGGCTGCCGTCGTTAGAAAATTATTTGGCCATGCTATTATTATTATTTTTGTTCTTAGCCACTAGTAGTACTTTTCATTCACTAAGTTTCGGTCATTGCAGTAGCTAAATCTGAATAGAAGAAAGACCAAATTGAGACAACTGGGGAAACAAGTGATCGAATCAGATCATCGATCCCTCTTTTTGGCCCAAGCTCCCGAGACGGACTATTAGTCCCTGTTCTTGGATTGACCAAGTCTGAATAGAGACAATGCAAAATGAAGCAAGCGGTGTACAGTGGTCAGAGTGTACATTTCTCTTGAACCACCATTGAGCTCCCCATATCCTTTGATGTCTCCATATCTGAAGAGTGTATAGGAATGTGAGAAAACCGGACTGCAGAGATGAATAGTACCATCCTTGATGTATTTAAGTCAAGAAATATTAATGGAGAATTTTCTGGAACTGTCATACATTTTTATTCATTCAGTTATGAGGGTAAAGATGATACATGGTATAAGGGTGAAATTTTTCCTGTCATGAGCTTGAAGACACCATTAGAGAAGGGGAAAGGAATTAGAGTTTCTATATGGACATTCCCAGCTGAGAAAGAAAAAGAATTGAAGGAAATGATTCTGGATCTATTGCCGTTGGAAAGTACCGCACTGCTGAAGCCAAGTTTTGCCGCGTACAATTCTCATATTGACCGTGCAATACTTTGTTGCACACCATGCACCTCAAATATGACTTCTTGGATCGCCAAGCAGGTTCAAATACCTTCCGATTCTTATCTCCAGGAGGATTCAAAAAACATGATACGCTCCATATTAAATCTGTCAAAGGTGATGTGGGACTTGGGCTATGCTTGTGATGGGTTAGATGACCCCCAAAGCTTTATTATGATGGATTCTAATGTCAAACTTCTCCCTTTTGGGATACGAAAGAGACAATTCTGATAGTGAAATGATGCACCGCATAAAGTTTTCAAATCTTTTAGAAAATCATCTCAGCCAAAGATGGAGTGATGTTGAAGTGGATGAATTTATCAAGCTCATGAGAAATCCTTCAGCAAGTTTGGAACATTTGCTAAATCATCCACTCTTGCTGCCCCCTGAGATTCGTATGTCCTCATACCTTAACTTGTGGATTGAGAATTTGACACCAGACCAACATAATCTGTACAACTCAATCACAAGTTATAAGGAAAAAGTACCCAATAATAAAACTTTCATGTATGGGGATACAACTCGAGAAGCTCATCGTTTTTCACGTAACACAGCATCGCACTACATAAGTCATTGGAGACGACTTATCCCGAGCAGTAATAGGACAAAAGCTCCATTCGACATGGTCGACAAAGAACTCAAGAGGTGCTTTCCAGGGTTGCCGTGTAAGATTTATGCTATGACATTAGACCCACTTTGGAACAAATGATTGGGGTGTGAGGAGTTTTCTAACATTTGCAAGTCCAATTTTTACAGTGGGAAGTGAAGTTTCTCCCCCAACGATATTCTTGTGGCTGTCGATTAGCCCTGCGATATTTTGTACTCAATCCAGAATGAAAATGTATGCACTCAATCCAGAATGAAAATGCATGTAGCATGTTGTCGTGCTCAATTGAGAATATGTAATGTAACGTCTGTTAGCAACCTGGTTCCGTGAACTTATTATAACTTGGA] [+] EMBL AK069468 [CGTCATTCCCGGCGCCGAATCCCCCCGAAACACACGATCCTTCCCGCGCCGCCGCTGAGGCGCCCTAACGCCGCCGTCTCCGGCCGCGCGACCACCTCCGATCACCGCCTCTCTCTCTCTCTCTCTCCACTGCTCCCCCGCGCATCGCCTCCACCATCGGGCCTACCTGCCCGCGCCGGCGCCGCCGATCAATCGCCGCCGCCGTCAGTCCTGCTCCTGCGGGCGATACCTAGCTGCTCCGGGGCGGCCATTTCCTCCGATTGCCCGCGCTGCCTCGTACCCTCTCCGCCACCGACCAGTCCCTTCCTTGAGTTCGTTGGCTGCCGTCGTTAGAAAATTATTTGGCCATGCTATTATTATTATTTTTGTTCTTAGCCACTAGTAGTACTTTTCATTCACTAAGTTTCGGTCATTGCAGTAGCTAAATCTGAATAGAAGAAAGACCAAATTGAGACAACTGGGGAAACAAGTGATCGAATCAGATCATCGATCCCTCTTTTTGGCCCAAGCTCCCGAGACGGACTATTAGTCCCTGTTCTTGGATTGACCAAGTCTGAATAGAGACAATGCAAAATGAAGCAAGCGGTGTACAGTGGTCAGAGTGTACATTTCTCTTGAACCACCATTGAGCTCCCCATATCCTTTGATGTCTCCATATCTGAAGAGTGTATAGGAATGTGAGAAAACCGGACTGCAGAGATGAATAGTACCATCCTTGATGTATTTAAGTCAAGAAATATTAATGGAGAATTTTCTGGAACTGTCATACATTTTTATTCATTCAGTTATGAGGGTAAAGATGATACATGGTATAAGGGTGAAATTTTTCCTGTCATGAGCTTGAAGACACCATTAGAGAAGGGGAAAGGAATTAGAGTTTCTATATGGACATTCCCAGCTGAGAAAGAAAAAGAATTGAAGGAAATGATTCTGGATCTATTGCCGTTGGAAAGTACCGCACTGCTGAAGCCAAGTTTTGCCGCGTACAATTCTCATATTGACCGTGCAATACTTTGTTGCACACCATGCACCTCAAATATGACTTCTTGGATCGCCAAGCAGGTTCAAATACCTTCCGATTCTTATCTCCAGGAGGATTCAAAAAACATGATACGCTCCATATTAAATCTGTCAAAGGTGATGTGGGACTTGGGCTATGCTTGTGATGGGTTAGATGACCCCCAAAGCTTTATTATGATGGATTCTAATGTCAAACTTCTCCCTTTTGGGATACGAAAGAGACAATTCTGATAGTGAAATGATGCACCGCATAAAGTTTTCAAATCTTTTAGAAAATCATCTCAGCCAAAGATGGAGTGATGTTGAAGTGGATGAATTTATCAAGCTCATGAGAAATCCTTCAGCAAGTTTGGAACATTTGCTAAATCATCCACTCTTGCTGCCCCCTGAGATTCGTATGTCCTCATACCTTAACTTGTGGATTGAGAATTTGACACCAGACCAACATAATCTGTACAACTCAATCACAAGTTATAAGGAAAAAGTACCCAATAATAAAACTTTCATGTATGGGGATACAACTCGAGAAGCTCATCGTTTTTCACGTAACACAGCATCGCACTACATAAGTCATTGGAGACGACTTATCCCGAGCAGTAATAGGACAAAAGCTCCATTCGACATGGTCGACAAAGAACTCAAGAGGTGCTTTCCAGGGTTGCCGTGTAAGATTTATGCTATGACATTAGACCCACTTTGGAACAAATGATTGGGGTGTGAGGAGTTTTCTAACATTTGCAAGTCCAATTTTTACAGTGGGAAGTGAAGTTTCTCCCCCAACGATATTCTTGTGGCTGTCGATTAGCCCTGCGATATTTTGTACTCAATCCAGAATGAAAATGTATGCACTCAATCCAGAATGAAAATGCATGTAGCATGTTGTCGTGCTCAATTGAGAATATGTAATGTAACGTCTGTTAGCAACCTGGTTCCGTGAACTTATTATAACTTGGA] consensusID : consensus_5376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 844 fasta sequence [AAAGATTTATTATGATGGATTCTAATGTCAAACTTCTCCCTTTTGGGATACGAAAGAGACAAAATTCTAATAGTGAAATGATG-ACCG-ATAAAGTTTTCAAATCTTTTAGAAAATCATCTCAGCCAAAGATGGAATGATATTGAAGTGAATGAATTTATCAAGCTCATGAGAAATCCTTCAGCAAGTTTGGAACATTTGCTAAATCATCCACTCTTGCTGCCCCCTGAGATTCGTATGTCCTCATACCTTAACTTGTGGATTGAGAATTTGACACCAGACTAACATAATCTGTACAACTCAATCACAAGTTATGGAAAATGGACCAGTACGATAAAATCCAGCCAAGAAGTCCTTCATTCCATTCTGACATATAAGGAAAAAGTACCCAATAATAAAACTATCATGTATGTGGATACAGCTCGAGATGCTCATCGTTTTTCACGTAACACAGCATCGCACTACATAAGTCATTGGAGACGACTTATCCCGAGCAGTAATGGGACAAAAGCTCCATTCGACATGGTCGACAAAGAACTCAAGAAGTGCTTTCCAGGGTTGCTGTGTAAGATTTATGCTATGACATTAGACCCACTTTGGAACAAATGATTGAGGTGTGAGGAGTTTTCTAGCATTTGCAAGTCCAATTTTTACAGTGGGAAGNTAAGTTTCTNCCCCCAACGTGGCATTCTTGNGGCTGTCGATTAGCCCTGCGATATTTTGTACTCATCCAGAATGGAAATGTATGTACTCAATCCAGATGAAAATGCATGGCGTCGNGCTCAATGANATATGTATGNAACGTCTGGTAGCAACCTATGATCTCATTCGGNGACTCTATGCAAGA] [+] EMBL AA751338 [AAAGATTTATTATGATGGATTCTAATGTCAAACTTCTCCCTTTTGGGATACGAAAGAGACAAAATTCTAATAGTGAAATGATG ACCG ATAAAGTTTT ] [+] EMBL CA765406 [ ggggTATTATGATGGATTCTAATGTCAAACTTCTCCCTTTTGGGATACGAAAGAGACAAAATTCTGATAGTGAAATGATGCACCGCATAAAGTTTTCAAATCTTTTAGAAAATCATCTCAGCCAAAGATGGAATGATATTGAAGTGAATGAATTTATCAAGCTCATGAGAAATCCTTCAGCAAGTTTGGAACATTTGCTAAATCATCCACTCTTGCTGCCCCCTGAGATTCGTATGTCCTCATACCTTAACTTGTGGATTGAGAATTTGACACCAGACTAACATAATCTGTACAACTCAATCACAAGTTATGGAAAATGGACCAGTACGATAAAATCCAGCCAAGAAGTCCTTCATTCCATTCTGACATATAAGGAAAAAGTACCCAATAATAAAACTATCATGTATGTGGATACAGCTCGAGATGCTCATCGTTTTTCACGTAACACAGCATCGCACTACATAAGTCATTGGAGACGACTTATCCCGAGCAGTAATGGGACAAAAGCTCCATTCGACATGGTCGACAAAGAACTCAAGAAGTGCTTTCCAGGGTTGCTGTGTAAGATTTATGCTATGACATTAGACCCACTTTGGAACAAATGATTGAGGTGTGAGGAGTTTTCTAGCATTTGCAAGTCCAATTTTTACAGTGGGAAGNTAAGTTTCTNCCCCCAACGTGGCATTCTTGNGGCTGTCGATTAGCCCTGCGATATTTTGTACTCATCCAGAATGGAAATGTATGTACTCAATCCAGATGAAAATGCATGGCGTCGNGCTCAATGANATATGTATGNAACGTCTGGTAGCAACCTATGATCTCATTCGGNGACTCTATGCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5376#0 CGTCATTCCCGGCGCCGAATCCCCCCGAAACACACGATCCTTCCCGCGCCGCCGCTGAGG 60 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 CGCCCTAACGCCGCCGTCTCCGGCCGCGCGACCACCTCCGATCACCGCCTCTCTCTCTCT 120 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 CTCTCTCCACTGCTCCCCCGCGCATCGCCTCCACCATCGGGCCTACCTGCCCGCGCCGGC 180 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 GCCGCCGATCAATCGCCGCCGCCGTCAGTCCTGCTCCTGCGGGCGATACCTAGCTGCTCC 240 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 GGGGCGGCCATTTCCTCCGATTGCCCGCGCTGCCTCGTACCCTCTCCGCCACCGACCAGT 300 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 CCCTTCCTTGAGTTCGTTGGCTGCCGTCGTTAGAAAATTATTTGGCCATGCTATTATTAT 360 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 TATTTTTGTTCTTAGCCACTAGTAGTACTTTTCATTCACTAAGTTTCGGTCATTGCAGTA 420 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 GCTAAATCTGAATAGAAGAAAGACCAAATTGAGACAACTGGGGAAACAAGTGATCGAATC 480 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 AGATCATCGATCCCTCTTTTTGGCCCAAGCTCCCGAGACGGACTATTAGTCCCTGTTCTT 540 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 GGATTGACCAAGTCTGAATAGAGACAATGCAAAATGAAGCAAGCGGTGTACAGTGGTCAG 600 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 AGTGTACATTTCTCTTGAACCACCATTGAGCTCCCCATATCCTTTGATGTCTCCATATCT 660 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 GAAGAGTGTATAGGAATGTGAGAAAACCGGACTGCAGAGATGAATAGTACCATCCTTGAT 720 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 GTATTTAAGTCAAGAAATATTAATGGAGAATTTTCTGGAACTGTCATACATTTTTATTCA 780 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 TTCAGTTATGAGGGTAAAGATGATACATGGTATAAGGGTGAAATTTTTCCTGTCATGAGC 840 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 TTGAAGACACCATTAGAGAAGGGGAAAGGAATTAGAGTTTCTATATGGACATTCCCAGCT 900 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 GAGAAAGAAAAAGAATTGAAGGAAATGATTCTGGATCTATTGCCGTTGGAAAGTACCGCA 960 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 CTGCTGAAGCCAAGTTTTGCCGCGTACAATTCTCATATTGACCGTGCAATACTTTGTTGC 1020 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 ACACCATGCACCTCAAATATGACTTCTTGGATCGCCAAGCAGGTTCAAATACCTTCCGAT 1080 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 TCTTATCTCCAGGAGGATTCAAAAAACATGATACGCTCCATATTAAATCTGTCAAAGGTG 1140 consensus_5376#1 ------------------------------------------------------------ consensus_5376#0 ATGTGGGACTTGGGCTATGCTTGTGATGGGTTAGATGACCCCCAAAGCTTTATTATGATG 1200 consensus_5376#1 -------------------------------------------AAAGATTTATTATGATG 17 **** ************ consensus_5376#0 GATTCTAATGTCAAACTTCTCCCTTTTGGGATACGAAAGAGACAA--TTCTGATAGTGAA 1258 consensus_5376#1 GATTCTAATGTCAAACTTCTCCCTTTTGGGATACGAAAGAGACAAAATTCTAATAGTGAA 77 ********************************************* **** ******** consensus_5376#0 ATGATGCACCGCATAAAGTTTTCAAATCTTTTAGAAAATCATCTCAGCCAAAGATGGAGT 1318 consensus_5376#1 ATGATG-ACCG-ATAAAGTTTTCAAATCTTTTAGAAAATCATCTCAGCCAAAGATGGAAT 135 ****** **** ********************************************** * consensus_5376#0 GATGTTGAAGTGGATGAATTTATCAAGCTCATGAGAAATCCTTCAGCAAGTTTGGAACAT 1378 consensus_5376#1 GATATTGAAGTGAATGAATTTATCAAGCTCATGAGAAATCCTTCAGCAAGTTTGGAACAT 195 *** ******** *********************************************** consensus_5376#0 TTGCTAAATCATCCACTCTTGCTGCCCCCTGAGATTCGTATGTCCTCATACCTTAACTTG 1438 consensus_5376#1 TTGCTAAATCATCCACTCTTGCTGCCCCCTGAGATTCGTATGTCCTCATACCTTAACTTG 255 ************************************************************ consensus_5376#0 TGGATTGAGAATTTGACACCAGACCAACATAATCTGTACAACTCAATCACAAGTTAT--- 1495 consensus_5376#1 TGGATTGAGAATTTGACACCAGACTAACATAATCTGTACAACTCAATCACAAGTTATGGA 315 ************************ ******************************** consensus_5376#0 ---------------------------------------------------------AAG 1498 consensus_5376#1 AAATGGACCAGTACGATAAAATCCAGCCAAGAAGTCCTTCATTCCATTCTGACATATAAG 375 *** consensus_5376#0 GAAAAAGTACCCAATAATAAAACTTTCATGTATGGGGATACAACTCGAGAAGCTCATCGT 1558 consensus_5376#1 GAAAAAGTACCCAATAATAAAACTATCATGTATGTGGATACAGCTCGAGATGCTCATCGT 435 ************************ ********* ******* ******* ********* consensus_5376#0 TTTTCACGTAACACAGCATCGCACTACATAAGTCATTGGAGACGACTTATCCCGAGCAGT 1618 consensus_5376#1 TTTTCACGTAACACAGCATCGCACTACATAAGTCATTGGAGACGACTTATCCCGAGCAGT 495 ************************************************************ consensus_5376#0 AATAGGACAAAAGCTCCATTCGACATGGTCGACAAAGAACTCAAGAGGTGCTTTCCAGGG 1678 consensus_5376#1 AATGGGACAAAAGCTCCATTCGACATGGTCGACAAAGAACTCAAGAAGTGCTTTCCAGGG 555 *** ****************************************** ************* consensus_5376#0 TTGCCGTGTAAGATTTATGCTATGACATTAGACCCACTTTGGAACAAATGATTGGGGTGT 1738 consensus_5376#1 TTGCTGTGTAAGATTTATGCTATGACATTAGACCCACTTTGGAACAAATGATTGAGGTGT 615 **** ************************************************* ***** consensus_5376#0 GAGGAGTTTTCTAACATTTGCAAGTCCAATTTTTACAGTGGGAAGTGAAGTTTCTCCCCC 1798 consensus_5376#1 GAGGAGTTTTCTAGCATTTGCAAGTCCAATTTTTACAGTGGGAAGNTAAGTTTCTNCCCC 675 ************* ******************************* ******** **** consensus_5376#0 AA---CGATATTCTTGTGGCTGTCGATTAGCCCTGCGATATTTTGTACTCAATCCAGAAT 1855 consensus_5376#1 CAACGTGGCATTCTTGNGGCTGTCGATTAGCCCTGCGATATTTTGTACTCA-TCCAGAAT 734 * * ******* ********************************** ******** consensus_5376#0 GAAAATGTATGCACTCAATCCAGAATGAAAATGCATGTAGCATGTTGTCGTGCTCAATTG 1915 consensus_5376#1 GGAAATGTATGTACTCAATCCAGA-TGAAAATGC-------ATGGCGTCGNGCTCAAT-- 784 * ********* ************ ********* *** **** ******* consensus_5376#0 AGAATATGTAATGTAACGTCTGTTAGCAACCT--GGTTCCGTGAACTTATTATAACTTGG 1973 consensus_5376#1 GANATATGTA-TGNAACGTCTGGTAGCAACCTATGATCTCATTCGGNGACTCTATGCAAG 843 ******* ** ******** ********* * * * * * * ** * consensus_5376#0 A 1974 consensus_5376#1 A 844 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||