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Oryza sativa
cluster # 5378 cluster # 5378       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5378#0 length = 963 sequences # 3  

consensusID : consensus_5378#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 963
fasta sequence
                              [ATGGGAGGTCTACGAACCCTGCTCATCTATGGTTGANAGGTTGCAATGGAGAAATGGCAACCCATCTTCAAAGGATTCCTGGGTATGATAAGTGGATGATTGAAAAGGAGGCCAAGTCTTATCTTGAAGCATTTGAAGATCGTAAAGAAAACCTTGTGTACCTTACAGCCGATGCTGAAACTGTGCTTGATGATCTAGACATGTCAAAAATATACATCATCGGTGGCCTAGTGGGCCGGAACAGATGG-AAAGGTATTACACTGAAAAAGGCGGTTGATCAGGGGATTCAATGTGCCAAGCTCCCTATTGGAAATTATTTAAAGATGTCAAGTTCTCAGGTTCTGACAGTTAACCAAGTGTTCGAGATAATGCTAAAGTTTGTGGAAACAAGGGACTGGAAGACTTCGTTCTTTCATGTGAT-CCCACAGAGGAAAAGAGGAGAAG-CTGAAGCTGAAAAT-GATGGGGTCGATATAAGCATGAACAATGTTGATGCCGCCGAAGGGGCTGAGAATCAAGGTGACCTTACCA-AGGTTTTTGATGAGGATGTAGATGATGACGATGTT-GTTGATGAAGAACTACAAGAGGAAGACACCGATATGGCTAAGAA-AAAGCAGTGTATTAGACATGAAAATGGTGAGGCAGAGGATGCCTCCACCAGGCCAGCTGAGGATCACTCTCCCGGTGCAGCAGCAGAGACGACGACACCCACCGGAGGCGCTCTCCCCCAGGCTGAGCAGAGTAAAGAAAGCA-ATGGTGCCGATGACTGAAGAAGACTGGACTGCAGGTGTATGATCACTGTTCTGTAGAACTGCTTTTCTTTAACCCGGGGTTTTAACTCGGGCGTACATTGTTTGGAGCGCTCTCTTTTCGTGTATCTCAGTCGTGTTTGACAGCCTACTCTTGTCATTGATGACTATAACAAGGTAGCCCTGAACCCGTTGCAATGCCTGCAAGCGTTTGGCC]

[+] EMBL D43334               [ATGGGAGGTCTACGAACCCTGCTCATCTATGGTTGANAGGTTGCAATGGAGAAATGGCAACCCATCTTCAAAGGATTCCTGGGTATGATAAGTGGATGATTGAAAAGGAGGCCAAGTCTTATCTTGAAGCATTTGAAGATCGTAAAGAAAACCTTGTGTACCTTACAGCCGATGCTGAAACTGTGCTTGATGATCTAGACATGTCAAAAATATACATCATCGGTGGCCTAGTGGGCCGGAACAGATGGNAAAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK058341             [                                                                                                             GGCCAAGTCTTATCTTGAAGCATTTGAAGATCGTAAAGAAAACCTTGTGTACCTTACAGCCGATGCTGAAACTGTGCTTGATGATCTAGACATGTCAAAAATATACATCATCGGTGGCCTAGTGGACCGGAACAGATGG AAAGGTATTACACTGAAAAAGGCGGTTGATCAGGGGATTCAATGTGCCAAGCTCCCTATTGGAAATTATTTAAAGATGTCAAGTTCTCAGGTTCTGACAGTTAACCAAGTGTTCGAGATAATGCTAAAGTTTGTGGAAACAAGGGACTGGAAGACTTCGTTCTTTCATGTGAT CCCACAGAGGAAAAGAGGAGAAG CTGAAGCTGAAAAT GATGGGGTCGATATAAGCATGAACAATGTTGATGCCGCCGAAGGGGCTGAGAATCAAGGTGACCTTACCA AGGTTTTTGATGAGGATGTAGATGATGACGATGTT GTTGATGAAGAACTACAAGAGGAAGACACCGATATGGCTAAGAA AAAGCAGTGTATTAGACATGAAAATGGTGAGGCAGAGGATGCCTCCACCAGGCCAGCTGAGGATCACTCTCCCGGTGCAGCAGCAGAGACGACGACACCCACCGGAGGCGCTCTCCCCCAGGCTGAGCAGAGTAAAGAAAGCA ATGGTGCCGATGACTGAAGAAGACTGGACTGCAGGTGTATGATCACTGTTCTGTAGAACTGCTTTTCTTTAACCCGGGGTTTTAACTCGGGCGTACATTGTTTGGAGCGCTCTCTTTTCGTGTATCTCAGTCGTGTTTGACAGCCTACTCTTGTCATTGATGACTATAACAAGGTAGCCCTGAACCCGTTGCAATGCCTGCAAGCGTTTGGCC]
[+] EMBL BI807281             [                                                                                                                                                                                                                                                                                                                                                                                                                               ATGTGATCCCCCCAGGAGAAAAGAGGAGAAGTCTGAANCTGGAAATNGAT GGGTCGATATAAGCATGAAC ATGTTGAT CCGCCGAAGGGTCTGAGAATCAAGGTGACCTTACCATAGGTTTTTGATGAGGATGTAGATGATGACGATGTTNGTTGATGAAGAACTACAAGAGGAAGACACCGATATGGCTAAGAATAAAGCAGTGTATTAGACATGAAAATGGTGAGGCAGAGGATGCCTCCACCAGGCCAGCTGAGGATCACTCTCCCGGTGCAGCAGCAGAGACGACGACACCCACCGGAGGCGCTCTCCCCCAGGCTGAGCAGAGTAAAGAAAGCATATGGTGCCGATGACTGAAGAAGACTGGACTGCAGGTGTATGATCACTGTTCTGTAGAACTGCTTTTCTTTAACCC GGGTTTTAACTCGGGCGTACATTGTTTGGAGCGCTCTCTTTTCGTGTATCTCAGTCGTGTTTGACAaaaaaa                                                                 ]


>consensus_5378#0 ATGGGAGGTCTACGAACCCTGCTCATCTATGGTTGANAGGTTGCAATGGAGAAATGGCAA CCCATCTTCAAAGGATTCCTGGGTATGATAAGTGGATGATTGAAAAGGAGGCCAAGTCTT ATCTTGAAGCATTTGAAGATCGTAAAGAAAACCTTGTGTACCTTACAGCCGATGCTGAAA CTGTGCTTGATGATCTAGACATGTCAAAAATATACATCATCGGTGGCCTAGTGGGCCGGA ACAGATGGAAAGGTATTACACTGAAAAAGGCGGTTGATCAGGGGATTCAATGTGCCAAGC TCCCTATTGGAAATTATTTAAAGATGTCAAGTTCTCAGGTTCTGACAGTTAACCAAGTGT TCGAGATAATGCTAAAGTTTGTGGAAACAAGGGACTGGAAGACTTCGTTCTTTCATGTGA TCCCACAGAGGAAAAGAGGAGAAGCTGAAGCTGAAAATGATGGGGTCGATATAAGCATGA ACAATGTTGATGCCGCCGAAGGGGCTGAGAATCAAGGTGACCTTACCAAGGTTTTTGATG AGGATGTAGATGATGACGATGTTGTTGATGAAGAACTACAAGAGGAAGACACCGATATGG CTAAGAAAAAGCAGTGTATTAGACATGAAAATGGTGAGGCAGAGGATGCCTCCACCAGGC CAGCTGAGGATCACTCTCCCGGTGCAGCAGCAGAGACGACGACACCCACCGGAGGCGCTC TCCCCCAGGCTGAGCAGAGTAAAGAAAGCAATGGTGCCGATGACTGAAGAAGACTGGACT GCAGGTGTATGATCACTGTTCTGTAGAACTGCTTTTCTTTAACCCGGGGTTTTAACTCGG GCGTACATTGTTTGGAGCGCTCTCTTTTCGTGTATCTCAGTCGTGTTTGACAGCCTACTC TTGTCATTGATGACTATAACAAGGTAGCCCTGAACCCGTTGCAATGCCTGCAAGCGTTTG GCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)