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Oryza sativa
cluster # 5379 cluster # 5379       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5379#0 length = 1084 sequences # 2  
consensus_5379#1 length = 885 sequences # 1  

consensusID : consensus_5379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1084
fasta sequence
                              [TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACGCCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCCGCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATTCGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCCTCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAATCGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTTCTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATCCTAACATATGCCTTGGCTAACCATTTTAAGGGCATTCTGGATGCAACATGATAATGGTTCGACCTTAAACTCAGATTGCTATTTTCAATGCCAGATGAAAAGCATGAGTCCCTCAAAGATTTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTAACACAGGTATCTTGTCTAACAGGTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGTCTGTTTTCTAATTCTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAATGTGCCTACTGAACTGAATTTGTC]

[+] EMBL AK069216             [TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACGCCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCCGCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATTCGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCCTCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAATCGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTTCTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATCCTAACATATGCCTTGGCTAACCATTTTAAGGGCATTCTGGATGCAACATGATAATGGTTCGACCTTAAACTCAGATTGCTATTTTCAATGCCAGATGAAAAGCATGAGTCCCTCAAAGATTTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTAACACAGGTATCTTGTCTAACAGGTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGTCTGTTTTCTAATTCTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAATGTGCCTACTGAACTGAATTTGTC]
[+] EMBL CK085253             [                                                                                                                                                                                                                                                                          CATAATAAAGGTTCACGGCACATTGCAGCAGAATCGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTTCTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATCCTAACATATGCCTTG                                                                                                                                                                                                                                                                                                 ]


>consensus_5379#0 TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACG CCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCC GCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATT CGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCC TCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAAT CGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTT CTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATA TGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCA GATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTT CACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTG TGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAG CAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAG ATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATC CTAACATATGCCTTGGCTAACCATTTTAAGGGCATTCTGGATGCAACATGATAATGGTTC GACCTTAAACTCAGATTGCTATTTTCAATGCCAGATGAAAAGCATGAGTCCCTCAAAGAT TTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTAACACAGGTATCT TGTCTAACAGGTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGTCTGTTTTCTAATTCT TTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAATGTGCCTACTGAACTGAATT TGTC



consensusID : consensus_5379#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 885
fasta sequence
                              [AGAGACTTGCTATTTCTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCGAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGAGTCACATTTTTTTTTGTATGGCTCTTTCTTTTGTATGTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCTTTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCTATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAGTCACATAATGCACTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGNCCTTTGACCCAAGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGGGCATCCAANTTATACCAGCATCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTTGACTCAAATGAANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATGCACATGGANAANGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA]

[+] EMBL CA763990             [AGAGACTTGCTATTTCTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCGAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGAGTCACATTTTTTTTTGTATGGCTCTTTCTTTTGTATGTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCTTTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCTATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAGTCACATAATGCACTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGNCCTTTGACCCAAGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGGGCATCCAANTTATACCAGCATCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTTGACTCAAATGAANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATGCACATGGANAANGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA]


>consensus_5379#1 AGAGACTTGCTATTTCTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTG TTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGG AAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGA GGACATCGAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAAT GGAGTGGAGATACTGTGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGC TTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTT CAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGAGTCACATTT TTTTTTGTATGGCTCTTTCTTTTGTATGTTATTCTTAGTAGTCAACTCAATATAGAAAGA ATAACAATAGCTTTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAA GTTGCTTTTGCTATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAG TCACATAATGCACTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATG NCCTTTGACCCAAGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGGGCATCCAAN TTATACCAGCATCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTT GACTCAAATGAANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATG CACATGGANAANGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5379#0      TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACG 60
consensus_5379#1      ------------------------------------------------------------
                                                                                  

consensus_5379#0      CCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCC 120
consensus_5379#1      ------------------------------------------------------------
                                                                                  

consensus_5379#0      GCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATT 180
consensus_5379#1      ------------------------------------------------------------
                                                                                  

consensus_5379#0      CGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCC 240
consensus_5379#1      ------------------------------------------------------------
                                                                                  

consensus_5379#0      TCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAAT 300
consensus_5379#1      ------------------------------------------------------------
                                                                                  

consensus_5379#0      CGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTT 360
consensus_5379#1      ---------------------------------------------AGAGACTTGCTATTT 15
                                                                   ***************

consensus_5379#0      CTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATA 420
consensus_5379#1      CTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATA 75
                      ***************** ******************************************

consensus_5379#0      TGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCA 480
consensus_5379#1      TGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCA 135
                      ************************************************************

consensus_5379#0      GATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTT 540
consensus_5379#1      GATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCGAATTCTT 195
                      **************************************************** *******

consensus_5379#0      CACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTG 600
consensus_5379#1      CACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTG 255
                      ************************************************************

consensus_5379#0      TGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAG 660
consensus_5379#1      TGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAG 315
                      *********** ************************************************

consensus_5379#0      CAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAG 720
consensus_5379#1      CAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAG 375
                      ************************************************************

consensus_5379#0      ATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATC 780
consensus_5379#1      ATGGCCATGGAAGATGGTACAGGGATGAAAATGTG-AGTCACATTTTTTTTTGTATGGCT 434
                      *********************************** ***   * *    *    ***   

consensus_5379#0      CTAACATATGCCTTGGCTAACCATTTTAAG-GGCATTCTGGATGCAACATGATAATGG-T 838
consensus_5379#1      CTTTCTTTTGTAT--GTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCT 492
                      **  * * **  *  * **  * *  **     *    *  *   *  ** * *** * *

consensus_5379#0      TCGACCTTAAACTCAGATTGCTATTTTCAATGCCAG-ATGAAAAGCATGAGTCCCT---- 893
consensus_5379#1      TTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCT 552
                      * *  * ** *  *  ***  * ***  * ***    **** *   * *   *  *    

consensus_5379#0      -----CAAAGATTTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTA 948
consensus_5379#1      ATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAGTCACATAATGCA 612
                           **** **   ** *   * **          **  * *** * *  *    ** *

consensus_5379#0      ACACAGGTATCT-TGTCTAACAG--GTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGT 1005
consensus_5379#1      CTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGNCCTTTGACCCA 672
                         **  * * * ** *  ****   *     ** *** * *     *   **  **   

consensus_5379#0      CTGTTTTCTAATT-----CTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAA 1060
consensus_5379#1      AGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGG-GCATCCAANTTATACCAGCA 731
                        *  *  **        **  ** **  * *  * *     *   *   * *** *  *

consensus_5379#0      TGTGCCT-ACTGA--ACTGAATTTGTC--------------------------------- 1084
consensus_5379#1      TCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTTGACTCAAATGA 791
                      * **  * *** *  * * ***                                      

consensus_5379#0      ------------------------------------------------------------
consensus_5379#1      ANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATGCACATGGANAA 851
                                                                                  

consensus_5379#0      ----------------------------------
consensus_5379#1      NGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA 885
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)