These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1084 fasta sequence [TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACGCCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCCGCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATTCGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCCTCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAATCGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTTCTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATCCTAACATATGCCTTGGCTAACCATTTTAAGGGCATTCTGGATGCAACATGATAATGGTTCGACCTTAAACTCAGATTGCTATTTTCAATGCCAGATGAAAAGCATGAGTCCCTCAAAGATTTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTAACACAGGTATCTTGTCTAACAGGTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGTCTGTTTTCTAATTCTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAATGTGCCTACTGAACTGAATTTGTC] [+] EMBL AK069216 [TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACGCCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCCGCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATTCGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCCTCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAATCGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTTCTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATCCTAACATATGCCTTGGCTAACCATTTTAAGGGCATTCTGGATGCAACATGATAATGGTTCGACCTTAAACTCAGATTGCTATTTTCAATGCCAGATGAAAAGCATGAGTCCCTCAAAGATTTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTAACACAGGTATCTTGTCTAACAGGTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGTCTGTTTTCTAATTCTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAATGTGCCTACTGAACTGAATTTGTC] [+] EMBL CK085253 [ CATAATAAAGGTTCACGGCACATTGCAGCAGAATCGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTTCTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATCCTAACATATGCCTTG ] consensusID : consensus_5379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 885 fasta sequence [AGAGACTTGCTATTTCTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCGAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGAGTCACATTTTTTTTTGTATGGCTCTTTCTTTTGTATGTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCTTTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCTATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAGTCACATAATGCACTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGNCCTTTGACCCAAGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGGGCATCCAANTTATACCAGCATCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTTGACTCAAATGAANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATGCACATGGANAANGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA] [+] EMBL CA763990 [AGAGACTTGCTATTTCTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATATGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCAGATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCGAATTCTTCACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTGTGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAGCAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAGATGGCCATGGAAGATGGTACAGGGATGAAAATGTGAGTCACATTTTTTTTTGTATGGCTCTTTCTTTTGTATGTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCTTTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCTATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAGTCACATAATGCACTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGNCCTTTGACCCAAGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGGGCATCCAANTTATACCAGCATCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTTGACTCAAATGAANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATGCACATGGANAANGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5379#0 TTCCCCTCCTCCTGGTTCCCGGCGGCGACTGCGGCGGCGGCGGCGGCGGCGACGCGAACG 60 consensus_5379#1 ------------------------------------------------------------ consensus_5379#0 CCGAGATGAGCGTGTTCGGCGGCGACAGCTGGGCGCGCGACGCGCGGCAGCGGAAGCGCC 120 consensus_5379#1 ------------------------------------------------------------ consensus_5379#0 GCCTCGACGACCTCATGCTCCCCGCCTCGGCAGTGTCCCCATCCTCGTCCTCGCCCGATT 180 consensus_5379#1 ------------------------------------------------------------ consensus_5379#0 CGTTCAGGAGGCTCTCCAACGGCAAGTTCGCCTGCCTCGTCTGCCCCCACCGCCCCGTCC 240 consensus_5379#1 ------------------------------------------------------------ consensus_5379#0 TCGACTCCCCCCTCATGCTCTCCATGCATAATAAAGGTTCACGGCACATTGCAGCAGAAT 300 consensus_5379#1 ------------------------------------------------------------ consensus_5379#0 CGAGGCTGAGGGAGAAAGAATTATCAAGACAACAAGAGATCAACAAGAGACTTGCTATTT 360 consensus_5379#1 ---------------------------------------------AGAGACTTGCTATTT 15 *************** consensus_5379#0 CTCCAGAAGCTTCCGTTTCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATA 420 consensus_5379#1 CTCCAGAAGCTTCCGTTCCAAGTTCTGGTAAGCAACATTATGGTGTTAGGTCTAGTGATA 75 ***************** ****************************************** consensus_5379#0 TGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCA 480 consensus_5379#1 TGAAAGAAAAACCATTGATTCAGCAGACAAGACAAGCTATTTTGGAAGCACAGTCCAGCA 135 ************************************************************ consensus_5379#0 GATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCAAATTCTT 540 consensus_5379#1 GATTTATCATCGACAGCGCCAACAAGAAATCTCATGATCTGGAGAGGACATCGAATTCTT 195 **************************************************** ******* consensus_5379#0 CACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTG 600 consensus_5379#1 CACTGTGTGATTCCCAAGTTACTCCTAGTGTTCCAATGGAAAAATGGAGTGGAGATACTG 255 ************************************************************ consensus_5379#0 TGAAAGGAAAAATCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAG 660 consensus_5379#1 TGAAAGGAAAATTCTTTGCTGGTGACAGAACTGCAACCAAAATGCTTGCAGAGGAGCAAG 315 *********** ************************************************ consensus_5379#0 CAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAG 720 consensus_5379#1 CAGATTTCCAAAAACGCCAGGAGCAAGAACTCAAATTCACTGCTTCAGGATGGAAACGAG 375 ************************************************************ consensus_5379#0 ATGGCCATGGAAGATGGTACAGGGATGAAAATGTGGAGTTTGACTCAGATGAAGATGATC 780 consensus_5379#1 ATGGCCATGGAAGATGGTACAGGGATGAAAATGTG-AGTCACATTTTTTTTTGTATGGCT 434 *********************************** *** * * * *** consensus_5379#0 CTAACATATGCCTTGGCTAACCATTTTAAG-GGCATTCTGGATGCAACATGATAATGG-T 838 consensus_5379#1 CTTTCTTTTGTAT--GTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCT 492 ** * * ** * * ** * * ** * * * * ** * *** * * consensus_5379#0 TCGACCTTAAACTCAGATTGCTATTTTCAATGCCAG-ATGAAAAGCATGAGTCCCT---- 893 consensus_5379#1 TTGCTCATATAGGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCT 552 * * * ** * * *** * *** * *** **** * * * * * consensus_5379#0 -----CAAAGATTTTTGCTCATCTATGCTGTCAGTCTTCCATACTTACTGGCTACTTGTA 948 consensus_5379#1 ATCAACAAAAATGAATGATTCCCAATTACTAAGCCTTTTTACACTAAGTCACATAATGCA 612 **** ** ** * * ** ** * *** * * * ** * consensus_5379#0 ACACAGGTATCT-TGTCTAACAG--GTTGATTATTAGTTGTGCCGTGGTTGTTGTACTGT 1005 consensus_5379#1 CTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGNCCTTTGACCCA 672 ** * * * ** * **** * ** *** * * * ** ** consensus_5379#0 CTGTTTTCTAATT-----CTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAA 1060 consensus_5379#1 AGGCCTCATAGAGGATAGCTCATTTCTCCTCTNCACTGG-GCATCCAANTTATACCAGCA 731 * * ** ** ** ** * * * * * * * *** * * consensus_5379#0 TGTGCCT-ACTGA--ACTGAATTTGTC--------------------------------- 1084 consensus_5379#1 TCTGTATCACTAACTATTAAATGCAATGGTGGATGGCAGGGGGGAGTTTGACTCAAATGA 791 * ** * *** * * * *** consensus_5379#0 ------------------------------------------------------------ consensus_5379#1 ANATGATCCTACATATGCCTTGGCTAACAATTTNAAGGCATTCTGGATGCACATGGANAA 851 consensus_5379#0 ---------------------------------- consensus_5379#1 NGGNTCGANCTTAAACTCAAATTGCTNTTTTCAA 885 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||