These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 511 fasta sequence [CAAACTAATTAATTGCATACAGTAGATTCTATCTTTTTTTTATTGGATGAAAAGATCATGAATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTAGGAGGTATGAAGTACAGTAAAGGGCTCATATACATAGCTTTCGACAAAAGTTTAACTACAACAAAAATGCATGTGTGGATGCGCATATAGTTGTT-ACAATCACCACGCATGTTCTCTAGTAA-ATAAATGCATTTCAGG-CATGGCATGTTGTAAATCAAGTCCAACTCTAGCGAAACATGTTCCTTTGCTTTCTGGCCGAGATATGATGTCTTTAGTGCATGCATTTTGCTGGCTACTTCTTTCA-TG-TCATTCTTTCGCTCGG-AGC-TGGGTCGTACAGGACAGCGCTACTTGAACAAAATACTAAACATTGGGTGAGCACCGTTTCTGACTCCGTTTTGCTTGAGCAAACTCCTGCATTCTTTGGAGATAAGCATCAATGAATGAAAAATTTCATT] [+] EMBL CA752595 [CAAACTAATTAATTGCATACAGTAGATTCTATCTTTTTTTTATTGGATGAAAAGATCATGAATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTAGGAGGTATGAAGTACAGTAAAGGGCTCATATACATAGCTTTCGACAAAAGTTTAACTACAACAAAAATGCATGTGTGGATGCGCATATAGTTGTT ACAATCACCACGCATGTTCTCTAGTAA ATAAATGCATTTCAGG CATGGCATGTTGTAAATCAAGTCCAACTCTAGCGAAACATGTTCCTTTGCTTTCTGGCCGAGATATGATGTCTTTAGTGCATGCATTTTGCTGGCTACTTCTTTCA TG TCATTCTTTCGCTCGG AGC TGGGTCGTACAGGACAGCGCTACTTGAACAAAATACTAAACATTGGGTGAGCACCGTTTCTGACTCCGTTTTGCTTGAGCAAACTCCTGCATTCTTTGGAGATAAGCATCAATGAATGAAAAATTTCATT] [-] EMBL BI812059 [ tttttttttTAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAG TGCATATCTCTAGGAGGTATGAAGTACAGTAAAGGGCTCATATACATAGCTTTCGACAAAAGTTTAACTACAACAAAAATGCATGTGTGGATGCGCATATAGTTGTTCACAATCACCACGCATGTTCTCTAGTAACATAAATGCATTTCAGGCCATGGCATG TGTAAATC AGTCCAACTCTAGCGAAACATGTTCCTTTGCTTTCTGGCCGAGATATGATGTCTTTAGTG ATGCA TTTG TGGCTACTTCTTTCAGTGTTCATTCTTTCGCTCGGTAGCGTGGTTCGTACAGGACAG GCTACTTGtagca ] consensusID : consensus_5384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [TTTTTTTTTTGGAATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTCAGGCAGGTCATGCAAGTCACCAGTAAAGGGCTCCATATCACCATCAGCTTTCGACAAAAGTTTAACTCACAACAAAAATGCATGTGTGGATGCGCATCATCAGTTGTTACCAATGCGACCCACGCATGTTCTCTAGTAACATCAAATGCCATTTCCAGGCATGGCCATGTTGTCACACATCCAGTCCCAACTCTCAGCGCAAACCATGTTCCCTTTGCTTTCTGGCCCGCAGCATCATGCATGTCTTTAGTGCCATGCATTTTGCGTGGCTCACTTCTTTCCATGTTCATTCTTTCGCTCGAGGTAGCGTGGGTTCGTACAGGGACAGGCGCTACTTGTAGCCAGCAGATACTAAACATTGGGTTGAGCACGTTTT] [-] EMBL BI812651 [TTTTTTTTTTGGAATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTCAGGCAGGTCATGCAAGTCACCAGTAAAGGGCTCCATATCACCATCAGCTTTCGACAAAAGTTTAACTCACAACAAAAATGCATGTGTGGATGCGCATCATCAGTTGTTACCAATGCGACCCACGCATGTTCTCTAGTAACATCAAATGCCATTTCCAGGCATGGCCATGTTGTCACACATCCAGTCCCAACTCTCAGCGCAAACCATGTTCCCTTTGCTTTCTGGCCCGCAGCATCATGCATGTCTTTAGTGCCATGCATTTTGCGTGGCTCACTTCTTTCCATGTTCATTCTTTCGCTCGAGGTAGCGTGGGTTCGTACAGGGACAGGCGCTACTTGTAGCCAGCAGATACTAAACATTGGGTTGAGCACGTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5384#0 CAAACTAATTAATTGCATACAGTAGATTCTATCTTTTTTTTATTGGATGAAAAGATCATG 60 consensus_5384#1 ----------------------------------TTTTTTTTTTGGA------------- 13 ******* ***** consensus_5384#0 AATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTAGG-- 118 consensus_5384#1 -ATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTCAGGC 72 ****************************************************** * consensus_5384#0 AGGT-ATG-AAGTA--CAGTAAAGGGCTC-ATATA--CAT-AGCTTTCGACAAAAGTTTA 170 consensus_5384#1 AGGTCATGCAAGTCACCAGTAAAGGGCTCCATATCACCATCAGCTTTCGACAAAAGTTTA 132 **** *** **** ************* **** *** ******************* consensus_5384#0 ACT-ACAACAAAAATGCATGTGTGGATGCGCATA--TAGTTGTTACAATCAC----CACG 223 consensus_5384#1 ACTCACAACAAAAATGCATGTGTGGATGCGCATCATCAGTTGTTACCAATGCGACCCACG 192 *** ***************************** ********* * * **** consensus_5384#0 CATGTTCTCTAGTAAA--TAAATGCA--TTTCAGGCATGGC-ATGTTGTAA---ATCAAG 275 consensus_5384#1 CATGTTCTCTAGTAACATCAAATGCCATTTCCAGGCATGGCCATGTTGTCACACATCCAG 252 *************** ****** ** ********** ******* * *** ** consensus_5384#0 TCC-AACTCTA---GCGAAACATGTTCC-TTTGCTTTCTGGCCGAGA----TATG-ATGT 325 consensus_5384#1 TCCCAACTCTCAGCGCAAACCATGTTCCCTTTGCTTTCTGGCCCGCAGCATCATGCATGT 312 *** ****** ** ** ******** ************** * *** **** consensus_5384#0 CTTTAGTGC-ATGCATTTTGC-TGGCT-ACTTCTTTC-ATGT-CATTCTTTCGCTCGGAG 380 consensus_5384#1 CTTTAGTGCCATGCATTTTGCGTGGCTCACTTCTTTCCATGTTCATTCTTTCGCTCGAGG 372 ********* *********** ***** ********* **** ************** * consensus_5384#0 C----TGGGT-CGTACAGG-ACAG-CGCTACTTGAA--CA--AAATACTAAACATTGGGT 429 consensus_5384#1 TAGCGTGGGTTCGTACAGGGACAGGCGCTACTTGTAGCCAGCAGATACTAAACATTGGGT 432 ***** ******** **** ********* * ** * **************** consensus_5384#0 -GAGCACCGTTTCTGACTCCGTTTTGCTTGAGCAAACTCCTGCATTCTTTGGAGATAAGC 488 consensus_5384#1 TGAGCACGTTTT------------------------------------------------ 444 ****** *** consensus_5384#0 ATCAATGAATGAAAAATTTCATT 511 consensus_5384#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||