cluster # 5389

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Oryza sativa
cluster # 5389 cluster # 5389 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5389#0 length = 398 sequences # 1

consensus_5389#1 length = 272 sequences # 1
consensus_5389#2 length = 179 sequences # 1

consensusID : consensus_5389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [GTGGATCAGGTTATGGTTCTGGTTCTGGATCTGGTTACGGCCAAGCTGGTTCATACGGGCCCTACGGTGGTGGCTATGCTCATGCAGGTGGTCAAGGTGGCGGCGGCGGCGGAGGGCAGAGTGGCCCAGGTGGCCATGGATATGGAAGTGGCTCTGGAAGCGGTTCTGGATCTGCCTATAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAACATATATGGCCCTAAAATAAATATGTACCAAATAATACGTCTTGTACCAAAATAATATGCCATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGTACACTTTCTCCTTAATTGATCGGTAAC]

[+] EMBL AK103350             [GTGGATCAGGTTATGGTTCTGGTTCTGGATCTGGTTACGGCCAAGCTGGTTCATACGGGCCCTACGGTGGTGGCTATGCTCATGCAGGTGGTCAAGGTGGCGGCGGCGGCGGAGGGCAGAGTGGCCCAGGTGGCCATGGATATGGAAGTGGCTCTGGAAGCGGTTCTGGATCTGCCTATAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAACATATATGGCCCTAAAATAAATATGTACCAAATAATACGTCTTGTACCAAAATAATATGCCATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGTACACTTTCTCCTTAATTGATCGGTAAC]




>consensus_5389#0
GTGGATCAGGTTATGGTTCTGGTTCTGGATCTGGTTACGGCCAAGCTGGTTCATACGGGC
CCTACGGTGGTGGCTATGCTCATGCAGGTGGTCAAGGTGGCGGCGGCGGCGGAGGGCAGA
GTGGCCCAGGTGGCCATGGATATGGAAGTGGCTCTGGAAGCGGTTCTGGATCTGCCTATA
GTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAACAT
ATATGGCCCTAAAATAAATATGTACCAAATAATACGTCTTGTACCAAAATAATATGCCAT
GGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAAT
ACAATATATGTACACTTTCTCCTTAATTGATCGGTAAC

consensusID : consensus_5389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [GGNATGTTNTGNCCNGACTGGNTCGGCCAAGCNGNTCATACNGGCCCTCGGTGGTGNCATCCNATAAGGTGGNAAAGGTGNCGCGNCGACGGAGGNANAGTGCCCAGGTGCCATGATATGAATTGGCTCTGAAAGCGGNTCTGGATCTCCTATAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAACATATATGNCCCTAAAATAAATATGTACCAAATAATACGTCTTNTACCCNAAATAATATAC]

[-] EMBL D42980               [GGNATGTTNTGNCCNGACTGGNTCGGCCAAGCNGNTCATACNGGCCCTCGGTGGTGNCATCCNATAAGGTGGNAAAGGTGNCGCGNCGACGGAGGNANAGTGCCCAGGTGCCATGATATGAATTGGCTCTGAAAGCGGNTCTGGATCTCCTATAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAACATATATGNCCCTAAAATAAATATGTACCAAATAATACGTCTTNTACCCNAAATAATATAC]




>consensus_5389#1
GGNATGTTNTGNCCNGACTGGNTCGGCCAAGCNGNTCATACNGGCCCTCGGTGGTGNCAT
CCNATAAGGTGGNAAAGGTGNCGCGNCGACGGAGGNANAGTGCCCAGGTGCCATGATATG
AATTGGCTCTGAAAGCGGNTCTGGATCTCCTATAGTGGTGGGCACCCATAGGACTGTTAT
CTAAATGAACTATGTGAATGATGTGTGCCAACATATATGNCCCTAAAATAAATATGTACC
AAATAATACGTCTTNTACCCNAAATAATATAC

consensusID : consensus_5389#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [CAAATAATACGTCTTGTACCAAAATAATATGCCATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGTACACTTTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF320963             [CAAATAATACGTCTTGTACCAAAATAATATGCCATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGTACACTTTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5389#2
CAAATAATACGTCTTGTACCAAAATAATATGCCATGGCATAGTTGTCATAGCTGGATAGT
TGTAATAAAAGTAGTAGTCTTTAAGACTACTAAATACAATATATGTACACTTTCTCCTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5389#0      GTGGATCAGGTTATGGTTCTGGTTCTGGATCTGGTTACGGCCAAGCTGGTTCATACGGGC 60
consensus_5389#1      ---------GGNATG-TTNTGN--CCNGA-CTGGNT-CGGCCAAGCNGNT-CATACNGGC 45
consensus_5389#2      ------------------------------------------------------------
                                                                                  

consensus_5389#0      CCTACGGTGGTGGCTATGCTCATGCAGGTGGTCAAGGTGGCGGCGGCGGCGGAGGGCAGA 120
consensus_5389#1      CCT-CGGTGGTGNC-AT-CCNATA-AGGTGGNAAAGGTGNCG-CGNCGACGGAGGN-ANA 99
consensus_5389#2      ------------------------------------------------------CAAATA 6
                                                                               * *

consensus_5389#0      GTGGCCCAGGTGGCCATGG-ATATGGAAGTGGCTCTGGAAGCGGTTCTGGATCTGCCTA- 178
consensus_5389#1      GTG-CCCAGGTG-CCATG--ATATG-AATTGGCTCTGAAAGCGGNTCTGGATCT-CCTA- 152
consensus_5389#2      ATACGTCTTGTACCAAAATAATATGCCA-TGGCATAGTTGTCATAGCTGGATAGTTGTAA 65
                       *    *  **  * *    *****  * ****   *    *    ******     ** 

consensus_5389#0      TAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAAC 238
consensus_5389#1      TAGTGGTGGGCACCCATAGGACTGTTATCTAAATGAACTATGTGAATGATGTGTGCCAAC 212
consensus_5389#2      TAAAAGTAGTAGTCTTTAAGACTA----CTAAATACAATATATGTACACTTTCTCCTTAA 121
                      **   ** *    *  ** ****     ******  * *** ** *   * * * *  * 

consensus_5389#0      ATATATGGCCCTAAAATAAATATGTACCAAATAATACGTCTTGTACC-AAAATAATATGC 297
consensus_5389#1      ATATATGNCCCTAAAATAAATATGTACCAAATAATACGTCTTNTACCCNAAATAATATAC 272
consensus_5389#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 179
                      * * *       **** *** *   *  *** ** *        *    *** ** *   

consensus_5389#0      CATGGCATAGTTGTCATAGCTGGATAGTTGTAATAAAAGTAGTAGTCTTTAAGACTACTA 357
consensus_5389#1      ------------------------------------------------------------
consensus_5389#2      ------------------------------------------------------------
                                                                                  

consensus_5389#0      AATACAATATATGTACACTTTCTCCTTAATTGATCGGTAAC 398
consensus_5389#1      -----------------------------------------
consensus_5389#2      -----------------------------------------