cluster # 5398

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Oryza sativa
cluster # 5398 cluster # 5398 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5398#0 length = 582 sequences # 3

consensusID : consensus_5398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 582
fasta sequence

                              [TTCTCGTACACCCAATTCACAAGAAATAAGCTTGCCTTATTTGTGGATTTCCCCATTAGTGATTTGGATCTGTCATCATATATCATTGACAAGAGTGAACTATCAGACTGCCACTATCGCTTGTATGCTATTAGCAATCACTATGGAAATATGGGAGGTGGACACTACACCGCCAGCATCTACCATGAAGAAGGGAAGGGATGGTATAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGTATAAAGACACCTGCTGCTTATGTGCTGTTCTACAGACGAGAATGATCAAGATACAGCTGCAATACATCAAATATTTTTTCGGGATGTTTTGCCAAGTCTAGATCTTCCTACATATTCAACATATGGGGCACTTGAATCTCTCAAGTCACTAACCTATACAATAGCATGTACAGATTCAATTGCCGACAGGAGAACAAAAGACCTAGCTAATGAACTATTCTTTTCCAGATTCTTTTTGTACATGGCTTGGGGGTCCTACAATGTAATTGCCTGCTAGTGATTAGCCTGGGATCTACAGATTCTTTTTGTCACCGAATTGTTGCCAATAATTTT]

[+] EMBL CB000105             [TTCTCGTACACCCAATTCACAAGAAATAAGCTTGCCTTATTTGTGGATTTCCCCATTAGTGATTTGGATCTGTCATCATATATCATTGACAAGAGTGAACTATCAGACTGCCACTATCGCTTGTATGCTATTAGCAATCACTATGGAAATATGGGAGGTGGACACTACACCGCCAGCATCTACCATGAAGAAGGGAAGGGATGGTATAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGTATTTTGACGCCTGCTGC                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB000982             [  CTCGTACACCCAATTCACAAGAAATAAGCTTGAGACATTTGTGGATTTCCCCATTAGTGATTTGGATCTGTCATCATATATCATTGACAAGAGTGAACTATCAGACTGCCACTATCGCTTGTATGCTATTAGCAATCACTATGGAAATATGGGAGGTGGACACTACACCGCCAGCATCTACCATGAAGAAGGGAAGGGATGGTATAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGTATAAAGACACCTGCTGCTTATGTGCTGTTCTACAGACGAGAATGATCAAGATACAGCTGCAATACATCAAATATTTTTTCGGGATGTTTTGCCAAGTCTAGATCTTCCTACATATTCAACATATGGGGCACTTGAATCTCTCAAGTCACTAACCTATACAATAGCATGTACAGA                                                                                                                                                               ]
[+] EMBL CB000634             [                                        TTGTGGATTTCCCCATTAATGATTTGGATCTGTCATCATATATCATTGACAAGAGTGAACTATCAGACTGCCACTATCGCTTGTATGCTATTAGCAATCACTATGGAAATATGGGAGGTGGACACTACACCGCCAGCATCTACCATGAAGAAGGGAAGGGATGGTATAAGTTTGATGATGAGTGCGTGAGACCTATAACTGAAGACAGCATAAAGACACCTGCTGCTTATGTGCTGTTCTACAGACGAGAATGATCAAGATACAGCTGCAATACATCAAATATTTTTTCGGGATGTTTTGCCAAGTCTAGATCTTCCTACATATTCAACATATGGGGCACTTGAATCTCTCAAGTCACTAACCTATACAATAGCATGTACAGATTCAATTGCCGACAGGAGAACAAAAGACCTAGCTAATGAACTATTCTTTTCCAGATTCTTTTTGTACATGGCTTGGGGGTCCTACAATGTAATTGCCTGCTAGTGATTAGCCTGGGATCTACAGATTCTTTTTGTCACCGAATTGTTGCCAATAATTTT]




>consensus_5398#0
TTCTCGTACACCCAATTCACAAGAAATAAGCTTGCCTTATTTGTGGATTTCCCCATTAGT
GATTTGGATCTGTCATCATATATCATTGACAAGAGTGAACTATCAGACTGCCACTATCGC
TTGTATGCTATTAGCAATCACTATGGAAATATGGGAGGTGGACACTACACCGCCAGCATC
TACCATGAAGAAGGGAAGGGATGGTATAAGTTTGATGATGAGTGCGTGAGACCTATAACT
GAAGACAGTATAAAGACACCTGCTGCTTATGTGCTGTTCTACAGACGAGAATGATCAAGA
TACAGCTGCAATACATCAAATATTTTTTCGGGATGTTTTGCCAAGTCTAGATCTTCCTAC
ATATTCAACATATGGGGCACTTGAATCTCTCAAGTCACTAACCTATACAATAGCATGTAC
AGATTCAATTGCCGACAGGAGAACAAAAGACCTAGCTAATGAACTATTCTTTTCCAGATT
CTTTTTGTACATGGCTTGGGGGTCCTACAATGTAATTGCCTGCTAGTGATTAGCCTGGGA
TCTACAGATTCTTTTTGTCACCGAATTGTTGCCAATAATTTT

clustalw multiple alignements is not computed in this case