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Oryza sativa
cluster # 5400 cluster # 5400       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5400#0 length = 1976 sequences # 3  

consensusID : consensus_5400#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1976
fasta sequence
                              [TCCAGAGATTATGTGCATCATGCAAATTAGTTTTGTTCTGTGCAGTAAGCTTATGGTTGTTCTGATTAAAGGATTCAATTCAACCCTGCGGCAAGGAAATGTTACTCATCATGAATATATACAGCTGGGTAAAGGACGTGATGTTGGAATGAATCAAATATCCAACTTTGAGGCCAAGGTGGCAAACGGAAATGGTGAACAAACACTCTGTCGAGATATTTATCGACTAGGGCACAGATTTGATTTCTACAGGATGTTGTCTCTATACTTCACTACAGTTGGTTTCTACTTCAATAGTATGGTGGCTGTTCTTACAGTGTATGTATTTTTATACGGGAGGTTATATCTTGTTTTGAGTGGCCTAGAGAAGTCAATTCTCCAGGATCCACAAATTAAGAACATCAAGCCCTTTGAAAATGCACTTGCAACTCAATCTATTTTCCAACTTGGAATGTTGCTCGTCCTCCCTATGATGATAGAGGTTGGCTTGGAGAAAGGATTTGGCAGAGCCTTGGGAGAGTTTGTAATAATGCAACTTCAATTAGCTTCTGTTTTCTTCACTTTCCATCTTGGAACGAAGACTCACTACTATGGAAGAACAATACTTCATGGTGGTGCAAAATATAGAGGTACAGGCCGGGGGTTTGTTGTGCGCCATGCAAAGTTTGCTGAGAATTACCGGATGTATTCCCGGAGCCACTTTGTGAAAGCACTGGAGCTACTCATTCTTTTGGTTGTCTATCTAGCTTATGGCATTTCGTACAGGAGCTCAAGTTTGTATCTATATGTCACAATTTCAATATGGTTCCTTGTTTTCTGTTGGCTGTTTGCACCTTTTGTCTTCAATCCATCATGCTTTGAGTGGCACAAGACTGTTGATGACTGGACTGACTGGTGGCATTGGATGAGCAATAGAGGAGGTATTGGCCTGGCACCAGAGCAAAGTTGGGAGGCTTGGTGGATAAGTGAACATGACCACCTGAGGAATGGTACAATACGTAGCCTGCTGTTGGAGTTCGTCCTCTCCCTTCGCTTCTTGATATACCAATATGGTATTGTTTATCATTTACACATAGTGCATGGGAACAGAAGCTTCATGGTGTATGCACTATCATGGCTGGTTATAGCTATAGTTCTT-GT-ATCACTTAAGGTCGTCTCAATGGGGAGAGAGAAGTTTATTACCAATTTTCAACTTGTATTCCGTATCCTCAAGGGCATTGTCTTTATTGTCCTCATCAGCTTGGTGGTCATATTATTTGTTGTTTTCAATCTGACTGTCTCTGATGTTGGTGCCAGTATTTTGGCATTCATCCCTACTGGCTGGTTTATTCTTCAGATTGCACAGCTCTGTGGACCATTGTTCCGGAGATTGGTGACGGAGCCGCTCTGCGCCCTGTTCTGTTCATGTTGCACCGGGGGCACCGCATGCAAGGGGCGTTGCTGCGCCAGGTTTAGGCTGAGGAGCCGGGATGTGCTCCGCAAGATCGGGCCATGGGACTCCATCCAGGAGATGGCGAGGATGTACGAGTACACCATGGGGATCCTCATCTTCTTCCCCATCGCCGT-CCTGTCGT-GGTTCCCCTTCGTCTCCGAGTTTCAGACTCGGCTGCTCTTCAGCCAGGCCTTCAGCCGGGGGCT-GCAGATCTCCAGGATCCTCACCGGCCAGAATGGTAGCGGCTCAAAGAGGGACTGATCATGATGAATATATGGGTTGTGCTTCTCTGCAGGTTTGACTAGTACAATCCGATGTAACTTTTCCTGGCACCGATATGGCGGTTCTGGGATTTATTTGTTTCTGGTTCCATCGTGTTCATATGAGGGCATGTGTGTAGTAGCCCCTATTGTTTTATTGCTTGGTTGCAGTGTTTGGGGAACAAAAAAACAATGAGAATGACGACCAGGATTTTCTATACCAAGGAATTTCATTTTCAGAGCCCAGTTGCTTCCNCCAATAATATTCTGTTTTATCTAAAAAA]

[+] EMBL AK064446             [TCCAGAGATTATGTGCATCATGCAAATTAGTTTTGTTCTGTGCAGTAAGCTTATGGTTGTTCTGATTAAAGGATTCAATTCAACCCTGCGGCAAGGAAATGTTACTCATCATGAATATATACAGCTGGGTAAAGGACGTGATGTTGGAATGAATCAAATATCCAACTTTGAGGCCAAGGTGGCAAACGGAAATGGTGAACAAACACTCTGTCGAGATATTTATCGACTAGGGCACAGATTTGATTTCTACAGGATGTTGTCTCTATACTTCACTACAGTTGGTTTCTACTTCAATAGTATGGTGGCTGTTCTTACAGTGTATGTATTTTTATACGGGAGGTTATATCTTGTTTTGAGTGGCCTAGAGAAGTCAATTCTCCAGGATCCACAAATTAAGAACATCAAGCCCTTTGAAAATGCACTTGCAACTCAATCTATTTTCCAACTTGGAATGTTGCTCGTCCTCCCTATGATGATAGAGGTTGGCTTGGAGAAAGGATTTGGCAGAGCCTTGGGAGAGTTTGTAATAATGCAACTTCAATTAGCTTCTGTTTTCTTCACTTTCCATCTTGGAACGAAGACTCACTACTATGGAAGAACAATACTTCATGGTGGTGCAAAATATAGAGGTACAGGCCGGGGGTTTGTTGTGCGCCATGCAAAGTTTGCTGAGAATTACCGGATGTATTCCCGGAGCCACTTTGTGAAAGCACTGGAGCTACTCATTCTTTTGGTTGTCTATCTAGCTTATGGCATTTCGTACAGGAGCTCAAGTTTGTATCTATATGTCACAATTTCAATATGGTTCCTTGTTTTCTGTTGGCTGTTTGCACCTTTTGTCTTCAATCCATCATGCTTTGAGTGGCACAAGACTGTTGATGACTGGACTGACTGGTGGCATTGGATGAGCAATAGAGGAGGTATTGGCCTGGCACCAGAGCAAAGTTGGGAGGCTTGGTGGATAAGTGAACATGACCACCTGAGGAATGGTACAATACGTAGCCTGCTGTTGGAGTTCGTCCTCTCCCTTCGCTTCTTGATATACCAATATGGTATTGTTTATCATTTACACATAGTGCATGGGAACAGAAGCTTCATGGTGTATGCACTATCATGGCTGGTTATAGCTATAGTTCTT GT ATCACTTAAGGTCGTCTCAATGGGGAGAGAGAAGTTTATTACCAATTTTCAACTTGTATTCCGTATCCTCAAGGGCATTGTCTTTATTGTCCTCATCAGCTTGGTGGTCATATTATTTGTTGTTTTCAATCTGACTGTCTCTGATGTTGGTGCCAGTATTTTGGCATTCATCCCTACTGGCTGGTTTATTCTTCAGATTGCACAGCTCTGTGGACCATTGTTCCGGAGATTGGTGACGGAGCCGCTCTGCGCCCTGTTCTGTTCATGTTGCACCGGGGGCACCGCATGCAAGGGGCGTTGCTGCGCCAGGTTTAGGCTGAGGAGCCGGGATGTGCTCCGCAAGATCGGGCCATGGGACTCCATCCAGGAGATGGCGAGGATGTACGAGTACACCATGGGGATCCTCATCTTCTTCCCCATCGCCGT CCTGTCGT GGTTCCCCTTCGTCTCCGAGTTTCAGACTCGGCTGCTCTTCAGCCAGGCCTTCAGCCGGGGGCT GCAGATCTCCAGGATCCTCACCGGCCAGAATGGTAGCGGCTCAAAGAGGGACTGATCATGATGAATATATGGGTTGTGCTTCTCTGCAGGTTTGACTAGTACAATCCGATGTAACTTTTCCTGGCACCGATATGGCGGTTCTGGGATTTATTTGTTTCTGGTTCCATCGTGTTCATATGAGGGCATGTGTGTAGTAGCCCCTATTGTTTTATTGCTTGGTTGCAGTGTTTGGGGAACAAAAAAACAATGAGAATGACGACCAGGAT                                                                        ]
[+] EMBL AA751360             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGTTCATCCTCTCCCTTCGCTTCTTGATATA CAATATGGTATTGTTTATCATTTACACATAGTGCATCGGAACAGAAGCTTCATGGTGTAT NACTATCATGGCTGGTTATAGCTATAGTTCTTCGTCATCACTTca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BQ906161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGCAAGGGGCGTTGCTGCGCCAGGTTTA GCTGAGGAGCCGGGATGTGCTCCGCAAGATC GGCCAT GGACTCCATCCAGGAGATGGCGAGGATGTACGAGTACACCATGGGGATCCTCATCTTCTTCCCCATC CCGTCCCTGTCGTGGGTTCCCCTTCNTTTCCGAGTTCCAGACTC GCTGCTCTTCAACCAAGCCTTCA CCCGGGGCTCGCAGATCTCCAGGATCCTCGCCGCCCAGAATGGTAGCGGCTCAAAGAGGGACTGATCATGATGAATATATGGGTTGTGCTTCTCTGCAGGTTTGACTAGTACAATCCGATGTAACTTTTCCTGGCACCGATATGCCGGTTCTGGGATTAATTTGTTTCTGGTTCCATCGTGTTCATATGAGGGCATGTGTGTAGTAGCCCCTATTGTTTTA TGCTT GTTCCAGT TTTGGGG   AAAAAACCAATGAGAATGNCGACCAGGATTTTCTATACCAAGGAATTTCATTTTCAGAGCCCAGTTGCTTCCNCCAATAATATTCTGTTTTATCTAAAAAA]


>consensus_5400#0 TCCAGAGATTATGTGCATCATGCAAATTAGTTTTGTTCTGTGCAGTAAGCTTATGGTTGT TCTGATTAAAGGATTCAATTCAACCCTGCGGCAAGGAAATGTTACTCATCATGAATATAT ACAGCTGGGTAAAGGACGTGATGTTGGAATGAATCAAATATCCAACTTTGAGGCCAAGGT GGCAAACGGAAATGGTGAACAAACACTCTGTCGAGATATTTATCGACTAGGGCACAGATT TGATTTCTACAGGATGTTGTCTCTATACTTCACTACAGTTGGTTTCTACTTCAATAGTAT GGTGGCTGTTCTTACAGTGTATGTATTTTTATACGGGAGGTTATATCTTGTTTTGAGTGG CCTAGAGAAGTCAATTCTCCAGGATCCACAAATTAAGAACATCAAGCCCTTTGAAAATGC ACTTGCAACTCAATCTATTTTCCAACTTGGAATGTTGCTCGTCCTCCCTATGATGATAGA GGTTGGCTTGGAGAAAGGATTTGGCAGAGCCTTGGGAGAGTTTGTAATAATGCAACTTCA ATTAGCTTCTGTTTTCTTCACTTTCCATCTTGGAACGAAGACTCACTACTATGGAAGAAC AATACTTCATGGTGGTGCAAAATATAGAGGTACAGGCCGGGGGTTTGTTGTGCGCCATGC AAAGTTTGCTGAGAATTACCGGATGTATTCCCGGAGCCACTTTGTGAAAGCACTGGAGCT ACTCATTCTTTTGGTTGTCTATCTAGCTTATGGCATTTCGTACAGGAGCTCAAGTTTGTA TCTATATGTCACAATTTCAATATGGTTCCTTGTTTTCTGTTGGCTGTTTGCACCTTTTGT CTTCAATCCATCATGCTTTGAGTGGCACAAGACTGTTGATGACTGGACTGACTGGTGGCA TTGGATGAGCAATAGAGGAGGTATTGGCCTGGCACCAGAGCAAAGTTGGGAGGCTTGGTG GATAAGTGAACATGACCACCTGAGGAATGGTACAATACGTAGCCTGCTGTTGGAGTTCGT CCTCTCCCTTCGCTTCTTGATATACCAATATGGTATTGTTTATCATTTACACATAGTGCA TGGGAACAGAAGCTTCATGGTGTATGCACTATCATGGCTGGTTATAGCTATAGTTCTTGT ATCACTTAAGGTCGTCTCAATGGGGAGAGAGAAGTTTATTACCAATTTTCAACTTGTATT CCGTATCCTCAAGGGCATTGTCTTTATTGTCCTCATCAGCTTGGTGGTCATATTATTTGT TGTTTTCAATCTGACTGTCTCTGATGTTGGTGCCAGTATTTTGGCATTCATCCCTACTGG CTGGTTTATTCTTCAGATTGCACAGCTCTGTGGACCATTGTTCCGGAGATTGGTGACGGA GCCGCTCTGCGCCCTGTTCTGTTCATGTTGCACCGGGGGCACCGCATGCAAGGGGCGTTG CTGCGCCAGGTTTAGGCTGAGGAGCCGGGATGTGCTCCGCAAGATCGGGCCATGGGACTC CATCCAGGAGATGGCGAGGATGTACGAGTACACCATGGGGATCCTCATCTTCTTCCCCAT CGCCGTCCTGTCGTGGTTCCCCTTCGTCTCCGAGTTTCAGACTCGGCTGCTCTTCAGCCA GGCCTTCAGCCGGGGGCTGCAGATCTCCAGGATCCTCACCGGCCAGAATGGTAGCGGCTC AAAGAGGGACTGATCATGATGAATATATGGGTTGTGCTTCTCTGCAGGTTTGACTAGTAC AATCCGATGTAACTTTTCCTGGCACCGATATGGCGGTTCTGGGATTTATTTGTTTCTGGT TCCATCGTGTTCATATGAGGGCATGTGTGTAGTAGCCCCTATTGTTTTATTGCTTGGTTG CAGTGTTTGGGGAACAAAAAAACAATGAGAATGACGACCAGGATTTTCTATACCAAGGAA TTTCATTTTCAGAGCCCAGTTGCTTCCNCCAATAATATTCTGTTTTATCTAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)