These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1192 fasta sequence [GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCACCGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGGCCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGTCGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTATCTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCACTGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCGCTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGAGTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTTTGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCTTGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTGGGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTTTGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGACACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATACGTGTGTTAATTA] [+] EMBL AK067851 [GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCACCGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGGCCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGTCGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTATCTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCACTGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCGCTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGAGTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTTTGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCTTGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTGGGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTTTGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGACACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATACGTGTGTTAATTA] consensusID : consensus_5401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCCCTATTTCTCCACAGATGTCACCTCTGACCGCATAGCTCACGTGAAGGCTGAGAACTTCCATACCTTTGGCCAATATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCGGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGGCCATGTGTGTTTCTTTGCAAACACGCTTCACCTGCTCACGCTCGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCATTGACTGTGACAGCTATACCTGATGATGTTGCCACCTAAGAGTTGCTTGATGTGATCATGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAGTGGGCTTCGTGGGATGTGAAAATTGATTCCTACACATTGACATTTGAACACAATGATGCTTTTTGTGTCTGATTGGACATAGGATATAGATTCTTCGAGGTAGACTATGGGCGGGGTACACCTAAGCACATCATACCATATCACTTATGCTCACTACATGGCAATCACATCGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCCCGATTATGACGCACTGCGCGGACAACTCTGGTATC] [+] EMBL CB000194 [AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCCCTATTTCTCCACAGATGTCACCTCTGACCGCATAGCTCACGTGAAGGCTGAGAACTTCCATACCTTTGGCCAATATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCGGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGGCCATGTGTGTTTCTTTGCAAACACGCTTCACCTGCTCACGCTCGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCATTGACTGTGACAGCTATACCTGATGATGTTGCCACCTAAGAGTTGCTTGATGTGATCATGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAGTGGGCTTCGTGGGATGTGAAAATTGATTCCTACACATTGACATTTGAACACAATGATGCTTTTTGTGTCTGATTGGACATAGGATATAGATTCTTCGAGGTAGACTATGGGCGGGGTACACCTAAGCACATCATACCATATCACTTATGCTCACTACATGGCAATCACATCGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCCCGATTATGACGCACTGCGCGGACAACTCTGGTATC] consensusID : consensus_5401#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [TATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGGCACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTATTTGCAGGGTCCAGTCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACATTATATATACGTGTGTTAATTAAGTAATNAGAAGTTTAGCTTGTGAAGT] [-] EMBL CB483496 [TATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGGCACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTATTTGCAGGGTCCAGTCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACATTATATATACGTGTGTTAATTAAGTAATNAGAAGTTTAGCTTGTGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5401#0 GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCAC 60 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 CGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGG 120 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 CCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGT 180 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 CGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTAT 240 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 CTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCAC 300 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 TGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCG 360 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 CTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTT 420 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 TGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGA 480 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 GTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTG 540 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 GCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTT 600 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 TGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAA 660 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 ------------------------------------------------------------ consensus_5401#0 CTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCT 720 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 -------------------------AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCT 35 consensus_5401#0 TGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTG 780 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 TTGGTTTTCCCTATTTCTCCACAGATGTCACCTCTGACCGCATAGCTCACGTGAAGGCTG 95 consensus_5401#0 GGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTT 840 consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 AGAACTTCCATACCTTTGGCCAATATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTT 155 consensus_5401#0 TGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAA 900 consensus_5401#2 ----------------------------------------TATGGGTGGGGTACACCTAA 20 consensus_5401#1 GGCGGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGGCCATGTGTGTTTCT 215 *** ** * consensus_5401#0 TCACATCATACCATTCACTTATGCAGACT------------ACATGGCAGTCGCAGTGCT 948 consensus_5401#2 TCACATCATACCATTCACTTATGCAGACT------------ACATGGCAGTCGCAGTGCT 68 consensus_5401#1 TTGCAA-ACACGCTTCACCTGCTCACGCTCGTTCTCCCAAAAGATGGGGGCTACTATGGC 274 * ** * ** ***** * ** ** * **** * * ** consensus_5401#0 TGGTGCTCCA--CCAATGCCAAAGAAAGGGAC-CCGGATTATGACACAGTGTGTGGAGAA 1005 consensus_5401#2 TGGTGCTCCA--CCAATGCCAAAGAAAGGGAC-CCGGATTATGGCACAGTGTGTGGAGAA 125 consensus_5401#1 AACTGCTTTTATCCATTGACTGTGACAGCTATACCTGATGATGTTGCCACCTAAGAGTTG 334 **** *** ** * ** ** * ** *** *** * * * consensus_5401#0 CAAG-TGT-ATCAAGGAGTTCCAAGATG---AGATGAAGGCCTTCATATAATATATATTA 1060 consensus_5401#2 CAAG-TGT-ATCAAGGAGTTCCAAGATG---AGATGAAGGCCTTCATATAATATATATTA 180 consensus_5401#1 CTTGATGTGATCATGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAG 394 * * *** **** * * * **** ** ** * * *** * *** * consensus_5401#0 TATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCA 1120 consensus_5401#2 TATGTGTA-----------------------------------TTTGCAGGGTCCAGTCA 205 consensus_5401#1 TGGGCTTCGTGGGATGTGAAAATTGATTCCTAC----------ACATTGACATTTGAACA 444 * * * * ** consensus_5401#0 ATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATAC 1180 consensus_5401#2 ATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACA-TTATATATAC 264 consensus_5401#1 CAATGATGCTTTTTGTGTCTGATTGGACATAGGATATAGATTCTTCGAGGTAGACTATGG 504 * ****** **** * ** * * * ****** ** * *** consensus_5401#0 GTGTGTTAA--TTA---------------------------------------------- 1192 consensus_5401#2 GTGTGTTAA--TTAAGTA-ATNAGAA-GTTTAGCTTGTGAAGT----------------- 303 consensus_5401#1 GCGGGGTACACCTAAGCACATCATACCATATCACTTATGCTCACTACATGGCAATCACAT 564 * * * ** ** consensus_5401#0 ------------------------------------------------------------ consensus_5401#2 ------------------------------------------------------------ consensus_5401#1 CGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCCCGATTATGACGCACTGCGCGGACA 624 consensus_5401#0 ----------- consensus_5401#2 ----------- consensus_5401#1 ACTCTGGTATC 635 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||