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Oryza sativa
cluster # 5408 cluster # 5408       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5408#0 length = 857 sequences # 3  

consensusID : consensus_5408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 857
fasta sequence
                              [CGGAGGCGGAGGCGGAGGCGGCGCCCTCCCTCCCTCCCTCCCTGTGTCTTCCCCCACTCCTCCCAAAACCCGACGGCCGGCGGCGCGGCGGAGGGCTGCGGCTGAAGGAGTCTGAGAGGGCGGCGCACGGCGGGTAACCACGACCGAAGCATGGAAGCTGGAGGGGTTAGGAGGAGGCGGAGCCCCATGGAGATAGCAGCTTTTTTTACACCGGCGACCGCAGCGGCAGAGGCGGTTGTCGCGATCACTAGGAACTGGGTTTTTTACTTCTGCATGCGTACCATTGTCTTCGCTGGAGGGTTGCTTGCGCTTTTTATTGGCTATGTTATGGCTGCCTATTCCAAGACCTGGCTTGATAGCCTGTCGTTACTGCCCCTTCTATTTGCAGCTGTCATCCTACCTGTGTATGCTGCAGTGGCTA-TCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTGCG-CAAGGCACTCGAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACAAAGATTAGACACACAGAACAACGAGTTTTTT-T-CCAT-GTTGTTTCTTGGACAGCGT-GATCAGT-GACA-CTTTAGCTTGTAGGGAAGTAGACTAAGGTTGGCAGGAAATTACTCCACTAGAACA-CTGGGGGACAAGATGGAACTTACAGGGTTTTCTTGCTGTGA-CTTGTACA-GCATGTAATGTACCAAATGATGCTCGGATGATCCATGGTGGGTCTGAGATAGTTCAGTGCAAACTGCAAAGACCATAACCTGCTGATAATAAGCATT-TGAAAANGGATCTTGTTGTCGACCGGGTATGTCCCTCACCCCGTAAAAAATNACCGCCA]

[+] EMBL AK108281             [CGGAGGCGGAGGCGGAGGCGGCGCCCTCCCTCCCTCCCTCCCTGTGTCTTCCCCCACTCCTCCCAAAACCCGACGGCCGGCGGCGCGGCGGAGGGCTGCGGCTGAAGGAGTCTGAGAGGGCGGCGCACGGCGGGTAACCACGACCGAAGCATGGAAGCTGGAGGGGTTAGGAGGAGGCGGAGCCCCATGGAGATAGCAGCTTTTTTTACACCGGCGACCGCAGCGGCAGAGGCGGTTGTCGCGATCACTAGGAACTGGGTTTTTTACTTCTGCATGCGTACCATTGTCTTCGCTGGAGGGTTGCTTGCGCTTTTTATTGGCTATGTTATGGCTGCCTATTCCAAGACCTGGCTTGATAGCCTGTCGTTACTGCCCCTTCTATTTGCAGCTGTCATCCTACCTGTGTATGCTGCAGTGGCTA TCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTGCG CAAGGCACTCGAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACAAAGATTAGACACACAGAACAACGAGTTTTTT T CCAT GTTGTTTCTTGGGCAGCGT GATCAGT GACA CTTTAGCTTGTAGGGAAGTAGACTGAGGTTGGCAGGAAATTACTCCACTAGAACA CTGGGGGACAAGATGGAACTTACAGGGTTTTCTTGCTGTGA CTTGTACA GCATGTAATGTACCAAATGATGCTCGGATGATCCATGGTGGGTCTGAGATAGTTCAGTGCAAACTGCAAAGACCATAACCTGCTGATAATAAGCATT                                                            ]
[+] EMBL CA764176             [                                                                                                                                                                ggGGGGTTAGGAGGAGGCGGAGCCCCATGGAGATAGCAGCCTTTTTTACAGCGGCGACCGCAGCGGCAGAGGCGGTTGTCGCGATCACTAGGAACTGGGTTTTTTACTTCTGCATGCGTACCATTGTCTTCGCTGGAGGGTTGCTTGCGCTTTTTATTGGCTATGTTATGGCTGCCTATTCCAAGACCTGGCTTGATAGCCTGTCGTTACTGCCCCTTCTATTTGCAGCTGTCATCCTACCTGTGTATGCTGCAGTGGCTA TCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTGCG CAAGGCACTCGAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACAAAGATTAGACACACAGAACAACGAGTTTTTT T CCAT GTTGTTTCTTGGACAGCGT GATCAGT GACA CTTTAGCTTGTAGGGAAGTAGACTAAGGTTGGCAGGAAATTACTCCACTAGAACA CTGGGGGACAAGATGGAACTTACAGGGTTTTCTTGCTGTGA CTTGTACA GCATGTAATGTACCAAATGATGCTCGGATGATCCATGGTGGGTCTGAGATAG                                                                                                         ]
[+] EMBL BQ906213             [                                                                                                                                                                                                                                                                                                                                                                                                                CTGTGTATGCT CAGTGGCTATTCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTACGCCAAGGCACTCGAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACCAAGATTAGACACACAGAACAACGAGTTTTTTGTCCCATGGTTGTTTCTTGGACAGCGTGGATCAGTGGACACCTTTAGCTTGTAGGGAAGTAGACTAAGGTTGGCAGGAAATTACTCCACTAGAACACCTGGGGGACCAGATGGAACTTACAGGGTTTTCTTGCTGTGACCTTGTACACGCATGTAATGTACC AATGATGCTCGGATGATCCATGGTGGNTCTGAGATAGTTCAGTCCAAACTGCCAAGACCATAACCTGCTGATAATAA CTTTGTGAAAANGGATCTTGTTGTCGACCGGGTATGTCCCTCACCCCGTAAAAAATNACCGCCA]


>consensus_5408#0 CGGAGGCGGAGGCGGAGGCGGCGCCCTCCCTCCCTCCCTCCCTGTGTCTTCCCCCACTCC TCCCAAAACCCGACGGCCGGCGGCGCGGCGGAGGGCTGCGGCTGAAGGAGTCTGAGAGGG CGGCGCACGGCGGGTAACCACGACCGAAGCATGGAAGCTGGAGGGGTTAGGAGGAGGCGG AGCCCCATGGAGATAGCAGCTTTTTTTACACCGGCGACCGCAGCGGCAGAGGCGGTTGTC GCGATCACTAGGAACTGGGTTTTTTACTTCTGCATGCGTACCATTGTCTTCGCTGGAGGG TTGCTTGCGCTTTTTATTGGCTATGTTATGGCTGCCTATTCCAAGACCTGGCTTGATAGC CTGTCGTTACTGCCCCTTCTATTTGCAGCTGTCATCCTACCTGTGTATGCTGCAGTGGCT ATCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTGCGCAAGGCACTC GAGATTGAGGGCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACAAAGATTAGA CACACAGAACAACGAGTTTTTTTCCATGTTGTTTCTTGGACAGCGTGATCAGTGACACTT TAGCTTGTAGGGAAGTAGACTAAGGTTGGCAGGAAATTACTCCACTAGAACACTGGGGGA CAAGATGGAACTTACAGGGTTTTCTTGCTGTGACTTGTACAGCATGTAATGTACCAAATG ATGCTCGGATGATCCATGGTGGGTCTGAGATAGTTCAGTGCAAACTGCAAAGACCATAAC CTGCTGATAATAAGCATTTGAAAANGGATCTTGTTGTCGACCGGGTATGTCCCTCACCCC GTAAAAAATNACCGCCA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)