These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAGAAAAAAAAACCCAAACCCGTTAAAAATTTTCATCCTTTTTTTGGGGGATCCCCCATTACAACCTTTTTCCGGGAATTGGGAAACCAATAACATACCCCATTTTTTAACCCTTAAAAAACCCCCCCCCCCCCCTTTTTTTTTGGTCAACCCCCACCCCAAAGGGCCAACTTTTTTTTTTTTTTTGCATCAAAATTCACCCCCCCCCTTTATAAATGGTAAATGCGGGCGGGCTTTTTAACATTTGCAGGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGGGGTTTCCCCGGATTTTGGGGCCCCCTAAAAATGGGGCCCCTTTTTTTTTTTTACCCCTTAAACCCATGTAAGGGCCCAAGGGCAAATTCCCGGCCCTTAAATT] [+] EMBL CF314316 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAGAAAAAAAAACCCAAACCCGTTAAAAATTTTCATCCTTTTTTTGGGGGATCCCCCATTACAACCTTTTTCCGGGAATTGGGAAACCAATAACATACCCCATTTTTTAACCCTTAAAAAACCCCCCCCCCCCCCTTTTTTTTTGGTCAACCCCCACCCCAAAGGGCCAACTTTTTTTTTTTTTTTGCATCAAAATTCACCCCCCCCCTTTATAAATGGTAAATGCGGGCGGGCTTTTTAACATTTGCAGGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGGGGTTTCCCCGGATTTTGGGGCCCCCTAAAAATGGGGCCCCTTTTTTTTTTTTACCCCTTAAACCCATGTAAGGGCCCAAGGGCAAATTCCCGGCCCTTAAATT] consensusID : consensus_5411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 421 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAACCCAAACCAGTTTAATATTTTCATCACTTCATTGGGGGATACCCCATTACAAGCATAGTCCGTGAATTGGGAAACCAATAACATAGCACATTGATTAACCCATTAAACACACACACACCCCCCATTTTTTTTGGTCAACCCCCAACCCAAAGGGCCAAGCTTTTTTTTTTTTTTGCTTCAAAATTCACACCCCCACATTATAAATGGTAAATGCAGGCAGGCTTTTTAACATTTGCAAGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGCGGTTTCCCCGGATTTTGGGGCCGCCTAAAACTGGTGGGCCTTTTTTTCCGGGGCCACACCCAAAAAAAAGGGGGCCTTGGGGCTGGTGCTTTT] [+] EMBL CF313084 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAACCCAAACCAGTTTAATATTTTCATCACTTCATTGGGGGATACCCCATTACAAGCATAGTCCGTGAATTGGGAAACCAATAACATAGCACATTGATTAACCCATTAAACACACACACACCCCCCATTTTTTTTGGTCAACCCCCAACCCAAAGGGCCAAGCTTTTTTTTTTTTTTGCTTCAAAATTCACACCCCCACATTATAAATGGTAAATGCAGGCAGGCTTTTTAACATTTGCAAGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGCGGTTTCCCCGGATTTTGGGGCCGCCTAAAACTGGTGGGCCTTTTTTTCCGGGGCCACACCCAAAAAAAAGGGGGCCTTGGGGCTGGTG ] [+] EMBL CF317948 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCAAACCAGTTTAATATATTCATCACTTCATCGGGGGATACCCCATTACAAGCATAATACGGGAATAGGGAAACCAATAACATAGCACATTGATTAACCCATTAAACACACACACACACCCCATTTTTTTTGGTCAAGCCCCAACCCAAAGGGCCAAGCTTTTTTATTTTTTTGCATCACAATTCACACCCCCACATGATAAATGGTAAATGCAGGCAGGCTTTTTAACAGTTGCAAGGGTTGCACCTGCAGTTGGAACCGCAGTTGCAGCCATGGGCGGTCTCGCCGGACTTTGGGGCCGCCTAAAACTGGTGCGCCTTTTTTTCCGGGGCCACACCCAAAACAACGGGGGCCTTGGGGCTGTTGCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5411#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_5411#1 ----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44 ******************************************** consensus_5411#0 CCAAAGAAAAAAAAACCCAAACCCGTTAAAAATTTTCATCCTTTTTTTGGGGGATCCCCC 120 consensus_5411#1 ----------AAAAACCCAAACCAGTTTAATATTTTCATCACTTCATTGGGGGATACCCC 94 ************* *** ** ********* ** ********* **** consensus_5411#0 ATTACAACCTTTTTCCGGGAATTGGGAAACCAATAACATACCCCATTTTTTAACCCTTAA 180 consensus_5411#1 ATTACAAGCATAGTCCGTGAATTGGGAAACCAATAACATAGCACATTGATTAACCCATTA 154 ******* * * **** ********************** * **** ******* * * consensus_5411#0 AAAACCCCCCCCCCCCCCTTTTTTTTTGGTCAACCCCCACCCCAAAGGGCCAACTTTTTT 240 consensus_5411#1 AACACACACACACCCCCCATTTTTTTTGGTCAACCCCCAACCCAAAGGGCCAAGCTTTTT 214 ** ** * * * ****** ******************** ************* ***** consensus_5411#0 TTTTTTTTTGCATCAAAATTCACCCCCCCCCTTTATAAATGGTAAATGCGGGCGGGCTTT 300 consensus_5411#1 TTTTTTTTTGCTTCAAAATTCACACCCCCACATTATAAATGGTAAATGCAGGCAGGCTTT 274 *********** *********** ***** * ***************** *** ****** consensus_5411#0 TTAACATTTGCAGGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGGGGTTTC 360 consensus_5411#1 TTAACATTTGCAAGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGCGGTTTC 334 ************ **************************************** ****** consensus_5411#0 CCCGGATTTTGGGGCCCCCTAAAAATGGGGCCCCTTTTTTTTTTTTACCCCTTAAACCCA 420 consensus_5411#1 CCCGGATTTTGGGGCCGCCTAAAACTGGTGGGCCTTTTTTTCCGGGGCCACACCCAAAAA 394 **************** ******* *** * ********* ** * * * consensus_5411#0 TGTAAGGGCCCAAGGGCAAATTCCCGGCCCTTAAATT 457 consensus_5411#1 AAAGGGGGCCTTGGGGCTGGTGCTTTT---------- 421 ***** **** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||