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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1415 fasta sequence
[ACCCCATTCGCGGGGCCTCCATCGATGGAGGCCTCTCTCCCGTTTCACCACCACCACCCCGCTGCCTCCTCCACCGCGGCGCATCACGCGGCCCGCCTCACTCCTCCTCCTCCTCCGCGAGACCCGCGTGCCACTGCCCGCTGGGTGCCCCCCGCGGCCGCGCCCGTGCGGAGCCGGAGCCCGGCAAATCTAGGGTTGCCGCCCAATCCTCCCCGACGCCTCCGCCTCCGCCTCGCGCCGCCGAGGATAACCGCTGCAGTCACGGGAGGGCCGCGTCGCCCCCGCCGCCGAGCCCCGCCTCCCTTGGAATGCGCCGGCGGCAGCAGCAGCAGCCTACGACGACCGCGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGCTCTTCGACGGCGCACGCGGGGGTGAGCCTAGTGGGCGAGAACAAAGTTTTGCAAATGTCATCAATTGTGCCGAAGGCGTCCAATATCTTCTGGCATGATTGTGCAGTTGGCCAGGCTGATCGGCAGAAGCTACTGAAGCAGAAAGGTTGCGTTGTTTGGATCACAGGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTCCATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATCAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTCTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTTTTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGTTCTTACATTGTGGACTTTATACTGTTACTGTTCTTCTACCAGAATCAGTGCCTGGGCTGCGTACATCCATCGTGGATGAAGAGGCTGGATTCCAA]
[+] EMBL AK071285 [ACCCCATTCGCGGGGCCTCCATCGATGGAGGCCTCTCTCCCGTTTCACCACCACCACCCCGCTGCCTCCTCCACCGCGGCGCATCACGCGGCCCGCCTCACTCCTCCTCCTCCTCCGCGAGACCCGCGTGCCACTGCCCGCTGGGTGCCCCCCGCGGCCGCGCCCGTGCGGAGCCGGAGCCCGGCAAATCTAGGGTTGCCGCCCAATCCTCCCCGACGCCTCCGCCTCCGCCTCGCGCCGCCGAGGATAACCGCTGCAGTCACGGGAGGGCCGCGTCGCCCCCGCCGCCGAGCCCCGCCTCCCTTGGAATGCGCCGGCGGCAGCAGCAGCAGCCTACGACGACCGCGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGCTCTTCGACGGCGCACGCGGGGGTGAGCCTAGTGGGCGAGAACAAAGTTTTGCAAATGTCATCAATTGTGCCGAAGGCGTCCAATATCTTCTGGCATGATTGTGCAGTTGGCCAGGCTGATCGGCAGAAGCTACTGAAGCAGAAAGGTTGCGTTGTTTGGATCACAGGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTCCATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATCAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTCTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTTTTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGTTCTTACATTGTGGACTTTATACTGTTACTGTTCTTCTACCAGAATCAGTGCCTGGGCTGCGTACATCCATCGTGGATGAAGAGGCTGGATTCCAA]
consensusID : consensus_5412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence
[GGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTCCATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACACGCTTTGATCTACCCATATTCCTTTTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTTTTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGTTTTTAAAAAAAAAAAAAAAAA]
[-] EMBL CA759382 [GGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTCCATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACACGCTTTGATCTACCCATATTCCTTTTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTTTTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGTTTTTAAAAAAAAAAAAAAAAA]
consensusID : consensus_5412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[GAGACAAGGGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAGGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTCCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAAAAAAAAAAAAAA]
[-] EMBL CA759383 [GAGACAAGGGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAACAAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTAGCAAGGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTCCATATCTCCGTATAGGAGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTGAACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGTGCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCTGAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAAGTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAGCCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTTTTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTCACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5412#0 ACCCCATTCGCGGGGCCTCCATCGATGGAGGCCTCTCTCCCGTTTCACCACCACCACCCC 60
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 GCTGCCTCCTCCACCGCGGCGCATCACGCGGCCCGCCTCACTCCTCCTCCTCCTCCGCGA 120
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 GACCCGCGTGCCACTGCCCGCTGGGTGCCCCCCGCGGCCGCGCCCGTGCGGAGCCGGAGC 180
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 CCGGCAAATCTAGGGTTGCCGCCCAATCCTCCCCGACGCCTCCGCCTCCGCCTCGCGCCG 240
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 CCGAGGATAACCGCTGCAGTCACGGGAGGGCCGCGTCGCCCCCGCCGCCGAGCCCCGCCT 300
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 CCCTTGGAATGCGCCGGCGGCAGCAGCAGCAGCCTACGACGACCGCGTGAGGAGGAGGAG 360
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 GAGGAGGAGGAGGAGGAGCGCTCTTCGACGGCGCACGCGGGGGTGAGCCTAGTGGGCGAG 420
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 AACAAAGTTTTGCAAATGTCATCAATTGTGCCGAAGGCGTCCAATATCTTCTGGCATGAT 480
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 TGTGCAGTTGGCCAGGCTGATCGGCAGAAGCTACTGAAGCAGAAAGGTTGCGTTGTTTGG 540
consensus_5412#1 ------------------------------------------------------------
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 ATCACAGGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTC 600
consensus_5412#1 ------GGACTTAGTGGTTCAGGTAAAAGTACCCTGGCATGCACATTAGATCGAGAGCTC 54
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 CATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAAC 660
consensus_5412#1 CATACAAGAGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAAC 114
consensus_5412#2 GAGACAAGGGGGAAGCTTTCTTATGTTCTTGATGGTGATAATTTAAGACATGGTTTGAAC 60
* ***** ***************************************************
consensus_5412#0 AAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTA 720
consensus_5412#1 AAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTA 174
consensus_5412#2 AAGGATCTTGGCTTTAAGGCGGAAGACCGTGCTGAAAATATACGCAGAGTTGGTGAGGTA 120
************************************************************
consensus_5412#0 GCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGG 780
consensus_5412#1 GCAAAGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTTCATATCTCCGTATAGG 234
consensus_5412#2 GCAAGGCTATTCGCAGATGCAGGCCTAGTATGCATTGCAAGTTCCATATCTCCGTATAGG 180
**** ************************************** ****************
consensus_5412#0 AGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTG 840
consensus_5412#1 AGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTG 294
consensus_5412#2 AGAGACCGTGAGTCTTGTCGTGCATTATTGTCAGATGGTAGCTTTATTGAAGTTTTCTTG 240
************************************************************
consensus_5412#0 AACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGT 900
consensus_5412#1 AACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGT 354
consensus_5412#2 AACATGCCCTTGGAATTGTGTGAGTCAAGGGATCCTAAGGGCCTTTATAAGCTTGCTCGT 300
************************************************************
consensus_5412#0 GCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCT 960
consensus_5412#1 GCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCT 414
consensus_5412#2 GCAGGAAAAATAAAGGGTTTTACTGGAATTGATGACCCTTATGAATCACCATTAAACTCT 360
************************************************************
consensus_5412#0 GAGATTGAGATCAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAA 1020
consensus_5412#1 GAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAA 474
consensus_5412#2 GAGATTGAGATAAAAGAAGTGGATGGTGTATGCCCTTCACCATCGGACATGGCAGGACAA 420
*********** ************************************************
consensus_5412#0 GTAGTCACTTATCTAGAGGAGAAAGGGTTTCTGCATGATTAGATGGGATGCATCGATCAG 1080
consensus_5412#1 GTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAG 534
consensus_5412#2 GTAGTCACTTATCTAGAGGAGAAAGGGTTTTTGCATGATTAGATGGGATGCATCGATCAG 480
****************************** *****************************
consensus_5412#0 CCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTT 1140
consensus_5412#1 CCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTT 594
consensus_5412#2 CCGGTAGAGTTTTCTCCTCCATATTAGACTAGTTCAGAATAAGTCAAGCTTTGGCATGTT 540
************************************************************
consensus_5412#0 TTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTC 1200
consensus_5412#1 TTCTGTACTTGTTTTTGTTTAGATTGGTTACACGCTTTGATCTACCCATATTCCTTTTTC 654
consensus_5412#2 TTCTGTACTTGTTTTTGTTTAGATTGGTTACATGCTTTGATCTACCCATATTCCTTCTTC 600
******************************** *********************** ***
consensus_5412#0 ACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTT 1260
consensus_5412#1 ACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAGATTTGTTTTT 714
consensus_5412#2 ACTGCACAGCTAATGGAGCTGTGCAATGACATTCAGGTAAGTTGGAGTAAA--------- 651
************************************************* *
consensus_5412#0 TTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGT 1320
consensus_5412#1 TTGGGATCCAAAATCATCCCAGTTATTAACAGGCCGTAGAAGATATCCATTTACTTCTGT 774
consensus_5412#2 --AAAAAAAAAAA----------------------------------------------- 662
* ****
consensus_5412#0 TCTTACATTGTGGACTTTATACTGTTACTGTTCTTCTACCAGAATCAGTGCCTGGGCTGC 1380
consensus_5412#1 TTTTAAAAAAAAAAAAAAAAA--------------------------------------- 795
consensus_5412#2 ------------------------------------------------------------
consensus_5412#0 GTACATCCATCGTGGATGAAGAGGCTGGATTCCAA 1415
consensus_5412#1 -----------------------------------
consensus_5412#2 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||