cluster # 5413

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Oryza sativa
cluster # 5413 cluster # 5413 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5413#0 length = 1011 sequences # 2

consensus_5413#1 length = 179 sequences # 1

consensusID : consensus_5413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1011
fasta sequence

                              [CCCTAGGAAGGACAGACAACGGCGACCATGGACGCCGCCGCGGCCGATCTCGAGGCGCGGCAGCTGCGGATCCTCCGCCGCGTCGCGGACCTCGAGCTCGCCGCGCAGCAGCACCGCCTGGGGGCGCTATCTATCTCCGCGGCGCCCTCGGGGGGCGAGGCGGAGACGGGCGCCACGGAGGCGCGGCTCTCCTCCATCCTGACCGCGCGCGGCGTGCTCGACTTCACCTTCCGGCGCGTGCCCGCCGACTACTACGACCGCCCTCTCGAGGAGCGCCGCGACCTCCTCCGCGCAGATTCAGTCAATCAACTCTGCAAGAGCATCGTCATGGTGAATACACAAGCTGCTGCAGATGTTGTTGACTGCAGCAATCCAAAGAATTCAAAATATTATGTCGTTGTTGTTCAGTATATGGCACGGCTTAATGCAGACAGCATCAAGAACTTCATCTATTCCCTAAACGAGAAGCAGATACCCAAGAAGAGATTTAACATGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACCGGGTTTGTTCACCATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAATCTATTACCAAGTTAGATAAGGATTTCTTCTGGCTGGGTGGTGGAGAAGTTGACCTCAAGCTTGGGGTGCGGACCTCACAGTTCCTAAATGCATTCAAACCATTTGTGGTGAAGTGTAGTTAGTGATAACTGTACAACGGAAGAGAAACTTTGAATCCATGTGGTTTTACCATCTTGATGAACACATGAGACATCGCCAGGGATGTAAACCAATAGGTTTTTGCTTGGATCTGGGGTTGGGATGTCTGTCTTTTTTAGAGCAGGCGTTTCTGTTCCAGTTGCACTTCTCGCATTAGTTACACTATTTTGGTAAGATTGATGCAGCAAAGGGGGCATTCTTGGGAGAATTGAGATAATTGGCACAAGTGGGCATGTACTAAAAACCTTTGTAGTTCGTGCCTTCAATATACTAGG]

[+] EMBL CB663204             [CCCTAGGAAGGACAGACAACGGCGACCATGGACGCCGCCGCGGCCGATCTCGAGGCGCGGCAGCTGCGGATCCTCCGCCGCGTCGCGGACCTCGAGCTCGCCGCGCAGCAGCACCGCCTGGGGGCGCTATCTATCTCCGCGGCGCCCTCGGGGGGCGAGGCGGAGACGGGCGCCACGGAGGCGCGGCTCTCCTCCATCCTGACCGCGCGCGGCGTGCTCGACTTCACCTTCCGGCGCGTGCCCGCCGACTACTACGACCGCCCTCTCGAGGAGCGCCGCGACCTCCTCCGCGCAGATTCAGTCAATCAACTCTGCAAGAGCATCGTCATGGTGAATACACAAGCTGCTGCAGATGTTGTTGACTGCAGCAATCCAAAGAATTCAAAATATTATGTCGTTGTTGTTCAGTATATGGCACGGCTTAATGCAGACAGCATCAAGAACTTCATCTATTCCCTAAACGAGAAGCAGATACCCAAGAAGAGATTTAACATGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACCGGGTTTGTTCACCATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAATCT                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK063236             [                      CGACCATGGACGCCGCCGCGGCCGATCTCGAGGCGCGGCAGCTGCGGATCCTCCGCCGCGTCGCGGACCTCGAGCTCGCCGCGCAGCAGCACCGCCTGGGGGCGCTATCTATCTCCGCGGCGCCCTCGGGGGGCGAGGCGGAGACGGGCGCCACGGAGGCGCGGCTCTCCTCCATCCTGACCGCGCGCGGCGTGCTCGACTTCACCTTCCGGCGCGTGCCCGCCGACTACTACGACCGCCCTCTCGAGGAGCGCCGCGACCTCCTCCGCGCAGATTCAGTCAATCAACTCTGCAAGAGCATCGTCATGGTGAATACACAAGCTGCTGCAGATGTTGTTGACTGCAGCAATCCAAAGAATTCAAAATATTATGTCGTTGTTGTTCAGTATATGGCACGGCTTAATGCAGACAGCATCAAGAACTTCATCTATTCCCTAAACGAGAAGCAGATACCCAAGAAGAGATTTAACATGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACAGGGTTTGTTCACAATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAAGCTATTACCAAGTTAGATAAGGATTTCTTCTGGCTGGGTGGTGGAGAAGTTGACCTCAAGCTTGGGGTGCGGACCTCACAGTTCCTAAATGCATTCAAACCATTTGTGGTGAAGTGTAGTTAGTGATAACTGTACAACGGAAGAGAAACTTTGAATCCATGTGGTTTTACCATCTTGATGAACACATGAGACATCGCCAGGGATGTAAACCAATAGGTTTTTGCTTGGATCTGGGGTTGGGATGTCTGTCTTTTTTAGAGCAGGCGTTTCTGTTCCAGTTGCACTTCTCGCATTAGTTACACTATTTTGGTAAGATTGATGCAGCAAAGGGGGCATTCTTGGGAGAATTGAGATAATTGGCACAAGTGGGCATGTACTAAAAACCTTTGTAGTTCGTGCCTTCAATATACTAGG]




>consensus_5413#0
CCCTAGGAAGGACAGACAACGGCGACCATGGACGCCGCCGCGGCCGATCTCGAGGCGCGG
CAGCTGCGGATCCTCCGCCGCGTCGCGGACCTCGAGCTCGCCGCGCAGCAGCACCGCCTG
GGGGCGCTATCTATCTCCGCGGCGCCCTCGGGGGGCGAGGCGGAGACGGGCGCCACGGAG
GCGCGGCTCTCCTCCATCCTGACCGCGCGCGGCGTGCTCGACTTCACCTTCCGGCGCGTG
CCCGCCGACTACTACGACCGCCCTCTCGAGGAGCGCCGCGACCTCCTCCGCGCAGATTCA
GTCAATCAACTCTGCAAGAGCATCGTCATGGTGAATACACAAGCTGCTGCAGATGTTGTT
GACTGCAGCAATCCAAAGAATTCAAAATATTATGTCGTTGTTGTTCAGTATATGGCACGG
CTTAATGCAGACAGCATCAAGAACTTCATCTATTCCCTAAACGAGAAGCAGATACCCAAG
AAGAGATTTAACATGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACCGGGTTTGTT
CACCATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAATCT
ATTACCAAGTTAGATAAGGATTTCTTCTGGCTGGGTGGTGGAGAAGTTGACCTCAAGCTT
GGGGTGCGGACCTCACAGTTCCTAAATGCATTCAAACCATTTGTGGTGAAGTGTAGTTAG
TGATAACTGTACAACGGAAGAGAAACTTTGAATCCATGTGGTTTTACCATCTTGATGAAC
ACATGAGACATCGCCAGGGATGTAAACCAATAGGTTTTTGCTTGGATCTGGGGTTGGGAT
GTCTGTCTTTTTTAGAGCAGGCGTTTCTGTTCCAGTTGCACTTCTCGCATTAGTTACACT
ATTTTGGTAAGATTGATGCAGCAAAGGGGGCATTCTTGGGAGAATTGAGATAATTGGCAC
AAGTGGGCATGTACTAAAAACCTTTGTAGTTCGTGCCTTCAATATACTAGG

consensusID : consensus_5413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [CTTTTTATGCCAGTTCTATTCTTTAACTCATGTTGTTTACTTGTGTTTGTGCAGTGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACAGGGTTTATTCACAATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAAGCTATTACCAAGTTAGATAAG]

[+] EMBL AA751362             [CTTTTTATGCCAGTTCTATTCTTTAACTCATGTTGTTTACTTGTGTTTGTGCAGTGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACAGGGTTTATTCACAATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAAGCTATTACCAAGTTAGATAAG]




>consensus_5413#1
CTTTTTATGCCAGTTCTATTCTTTAACTCATGTTGTTTACTTGTGTTTGTGCAGTGAGGC
TGGCACCAGAAGAGGAGTCACTCAAGCTTACAGGGTTTATTCACAATGCTGTTACATGCA
TTGGAATGGAAACAGACATACCGGTTATCATTGATGAAGCTATTACCAAGTTAGATAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5413#0      CCCTAGGAAGGACAGACAACGGCGACCATGGACGCCGCCGCGGCCGATCTCGAGGCGCGG 60
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      CAGCTGCGGATCCTCCGCCGCGTCGCGGACCTCGAGCTCGCCGCGCAGCAGCACCGCCTG 120
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      GGGGCGCTATCTATCTCCGCGGCGCCCTCGGGGGGCGAGGCGGAGACGGGCGCCACGGAG 180
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      GCGCGGCTCTCCTCCATCCTGACCGCGCGCGGCGTGCTCGACTTCACCTTCCGGCGCGTG 240
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      CCCGCCGACTACTACGACCGCCCTCTCGAGGAGCGCCGCGACCTCCTCCGCGCAGATTCA 300
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      GTCAATCAACTCTGCAAGAGCATCGTCATGGTGAATACACAAGCTGCTGCAGATGTTGTT 360
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      GACTGCAGCAATCCAAAGAATTCAAAATATTATGTCGTTGTTGTTCAGTATATGGCACGG 420
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      CTTAATGCAGACAGCATCAAGAACTTCATCTATTCCCTAAACGAGAAGCAGATACCCAAG 480
consensus_5413#1      --------------CTTTTTATGCCAGTTCTATTCTTTAACTCAT-----GTTGTTTACT 41
                                    * *      *    *******  ***   *      * *    *  

consensus_5413#0      AAGAGATTTAACATGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACCGGGTTTGTT 540
consensus_5413#1      TGTGTTTGTGCAGTGAGGCTGGCACCAGAAGAGGAGTCACTCAAGCTTACAGGGTTTATT 101
                            * *    ************************************* ****** **

consensus_5413#0      CACCATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAATCT 600
consensus_5413#1      CACAATGCTGTTACATGCATTGGAATGGAAACAGACATACCGGTTATCATTGATGAAGCT 161
                      *** ***************************************************** **

consensus_5413#0      ATTACCAAGTTAGATAAGGATTTCTTCTGGCTGGGTGGTGGAGAAGTTGACCTCAAGCTT 660
consensus_5413#1      ATTACCAAGTTAGATAAG------------------------------------------ 179
                      ******************                                          

consensus_5413#0      GGGGTGCGGACCTCACAGTTCCTAAATGCATTCAAACCATTTGTGGTGAAGTGTAGTTAG 720
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      TGATAACTGTACAACGGAAGAGAAACTTTGAATCCATGTGGTTTTACCATCTTGATGAAC 780
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      ACATGAGACATCGCCAGGGATGTAAACCAATAGGTTTTTGCTTGGATCTGGGGTTGGGAT 840
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      GTCTGTCTTTTTTAGAGCAGGCGTTTCTGTTCCAGTTGCACTTCTCGCATTAGTTACACT 900
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      ATTTTGGTAAGATTGATGCAGCAAAGGGGGCATTCTTGGGAGAATTGAGATAATTGGCAC 960
consensus_5413#1      ------------------------------------------------------------
                                                                                  

consensus_5413#0      AAGTGGGCATGTACTAAAAACCTTTGTAGTTCGTGCCTTCAATATACTAGG 1011
consensus_5413#1      ---------------------------------------------------