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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2157 fasta sequence
[GCCGCCTCCGCTTCGATCGCTTCCTCCGTTGCCGCCGATCCCGCCGGCGAACGGCATGTGGCCGTCGCTCCGGCGAGCAGCAGCCGCCGCCGGCGGCGCCAGGTTCAAGAATGTTTCTCATTTGCTTCCTACATGTTCTGGATTAATGGATAATAACCTGAATGGTGGTTCTTTGAGGGGTCTGGGAGAAATTGGCTGCCAGGTGTCTTGTCAAGAACTCCCATTTGGTTATTCAGGAACTGGTTTCCCCTCGATTCGAAGACTTTCCTCAGAGCCTGCAGAAAGGCCATTCAGAAACAAAAATGATAGTGAGATATTGGGGGACGATGCGTCTGATCAACTACCAGATGACAACTTGGAATGTGATGACGAACTTGATCAACATAATGTTATGATTGATGCGAGTGAGACGAAGGCTAAGAATCTAAGGTCCCAGTTTCCTGCAATAGATCGTAGTGGTGACACAAAACTGCAAAATAAAACCTACAGGTCTTATCTTTTCCAAATTGTGTTGGATGCTCCCTCAAATTCTCTCAGGCATGTGCTCGATAAGTGGATTGAAGATGGTAACCAGCTTGAAAGAAACGACGCTATGCTGGTTTTGTTTCACCTCAAGAAACAACATATGTATCGGAAGGCTTTGCAGGAATGAGGTACTCTATGAAACTCTAATTGTGAACAGTGTGTTGGCGGGCGATATCCAGAAAGCAGAAGAAGTCTTCAAGGAAATAAAAGACCTATGTTTGCGTTTAACTGTCACCCTCTGCAACCAAATGATACTGCTATACAAGAGGATTGCTCCTGGAAAGGTAGCTAGCGTACTCATGCTGATGGAAAAGGAAAATGTCAAGCCTTCTGCCTTTACATACAGACTGCTGATTGACTTGAAAGGGCGGTCAAATGACCTGGCAGGCATTGAGGTGGTCTTAAATGAGATGAAGGCTTATGGCATTGAGCCATCTACTTCAACTCAAACAATGGTTGCTAGGTTCTACATCCATGGTGGGCTCACAGAGAAAGCGGAAGCAGTTGTGAAGGAGATGGAAGCGCAGCTCTCGAATTCAAAGGACGGACGGCATGTCATCAAATCTCTTCTTCACCTCTATGCTGCCCTCAACAAGCCAAATGATGTGGCCAGAATATGGGAAATGTGCACAGAACCTATGCTGGAGGATTTCTTGTCTGCAATCAAGGCATGGGGTGAACTCGGGCTTATTGAAAAAGCAGAGGAGACCTTTGAGGCGATGGCGAACGCACCAGAAAAGCTATCTTCCAAGTACTACAATGCGATGCTGAATGTGTACGCGCAGAATAAACTTCTTTCTAAGGGCAAACAGTTTGTGGAAAGGATGTGCCGTGATGGGTGCCCGAACGGTCCTCTAACCTGGGATGCACTCATCAATCTCTATGTGAATTCAGGTGAGGTGGAGAAAGCCGACTCATTCCTCCTGAATGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACTTCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTGATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAGCGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGATGAGAGGTGACAATGTGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAGGCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAGTAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATTTTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATATTACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCACTTCACCTAATGATGGTTTTTTTTAAAAAAAAAAACACCTGATGCTCTAAATAATGAAGGGAGAGGAACGAGGATGCTTTGTTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTTAGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACT]
[+] EMBL AK102206 [GCCGCCTCCGCTTCGATCGCTTCCTCCGTTGCCGCCGATCCCGCCGGCGAACGGCATGTGGCCGTCGCTCCGGCGAGCAGCAGCCGCCGCCGGCGGCGCCAGGTTCAAGAATGTTTCTCATTTGCTTCCTACATGTTCTGGATTAATGGATAATAACCTGAATGGTGGTTCTTTGAGGGGTCTGGGAGAAATTGGCTGCCAGGTGTCTTGTCAAGAACTCCCATTTGGTTATTCAGGAACTGGTTTCCCCTCGATTCGAAGACTTTCCTCAGAGCCTGCAGAAAGGCCATTCAGAAACAAAAATGATAGTGAGATATTGGGGGACGATGCGTCTGATCAACTACCAGATGACAACTTGGAATGTGATGACGAACTTGATCAACATAATGTTATGATTGATGCGAGTGAGACGAAGGCTAAGAATCTAAGGTCCCAGTTTCCTGCAATAGATCGTAGTGGTGACACAAAACTGCAAAATAAAACCTACAGGTCTTATCTTTTCCAAATTGTGTTGGATGCTCCCTCAAATTCTCTCAGGCATGTGCTCGATAAGTGGATTGAAGATGGTAACCAGCTTGAAAGAAACGACGCTATGCTGGTTTTGTTTCACCTCAAGAAACAACATATGTATCGGAAGGCTTTGCAGGAATGAGGTACTCTATGAAACTCTAATTGTGAACAGTGTGTTGGCGGGCGATATCCAGAAAGCAGAAGAAGTCTTCAAGGAAATAAAAGACCTATGTTTGCGTTTAACTGTCACCCTCTGCAACCAAATGATACTGCTATACAAGAGGATTGCTCCTGGAAAGGTAGCTAGCGTACTCATGCTGATGGAAAAGGAAAATGTCAAGCCTTCTGCCTTTACATACAGACTGCTGATTGACTTGAAAGGGCGGTCAAATGACCTGGCAGGCATTGAGGTGGTCTTAAATGAGATGAAGGCTTATGGCATTGAGCCATCTACTTCAACTCAAACAATGGTTGCTAGGTTCTACATCCATGGTGGGCTCACAGAGAAAGCGGAAGCAGTTGTGAAGGAGATGGAAGCGCAGCTCTCGAATTCAAAGGACGGACGGCATGTCATCAAATCTCTTCTTCACCTCTATGCTGCCCTCAACAAGCCAAATGATGTGGCCAGAATATGGGAAATGTGCACAGAACCTATGCTGGAGGATTTCTTGTCTGCAATCAAGGCATGGGGTGAACTCGGGCTTATTGAAAAAGCAGAGGAGACCTTTGAGGCGATGGCGAACGCACCAGAAAAGCTATCTTCCAAGTACTACAATGCGATGCTGAATGTGTACGCGCAGAATAAACTTCTTTCTAAGGGCAAACAGTTTGTGGAAAGGATGTGCCGTGATGGGTGCCCGAACGGTCCTCTAACCTGGGATGCACTCATCAATCTCTATGTGAATTCAGGTGAGGTGGAGAAAGCCGACTCATTCCTCCTGAATGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACTTCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTGATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAGCGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGATGAGAGGTGACAATGTGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAGGCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAGTAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATTTTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATATTACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCACTTCACCTAATGATGGTTTTTTTTAAAAAAAAAAACACCTGATGCTCTAAATAATGAAGGGAGAGGAACGAGGATGCTTTGTTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTTAGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACT]
[-] EMBL AW069915 [ GAGAAAGCGGAAGCAGTTGTGAAGGAGATGGAAGCGCAGCTCTCGAATTCAAAGGACGGACGGCATGTCATCAAATCTCTTCTTCACCTCTATGCTGCCCTCAACAAGCCAAATGATGTGGCCAGAATATGGGAAATGTGCACAGAACCTATGCTGGAGGATTTCTTGTCTGCAATCAAGGCATGGGGTGAACTCGGGCTTATTGAAAAAGCAGAGGAGACCTTTGAGGCGATGGCGAACGCACCAGAAAAGCTATCTTCCAAGTACctgcc ]
consensusID : consensus_5414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[ACGAGACAAGGGGGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACTTCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTGATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAGCGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGACGAGAGGTGACAATGTGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAGGCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAGTAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATTTTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATATTACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCACTTCACCTAATGATGGTTTTTTTTAAAAAAAAAACACCTGATGCTCTAAATAATGAAGGGAGAGGAACGAGGATGCTTTGNTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTTAGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACTGCTGGCAAGTATTAGTATGCGCCGNGCGTTCTCTNTTTTTTGACAGNTACAGNGNGCGNTTTATATTGNCAAAGGTTCCGTTNAAANAAGTTNTCATCGGGATGGTGCCNT]
[+] EMBL CA765951 [ACGAGACAAGGGGGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACTTCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTGATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAGCGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGACGAGAGGTGACAATGTGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAGGCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAGTAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATTTTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATATTACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCACTTCACCTAATGATGGTTTTTTTTAAAAAAAAAACACCTGATGCTCTAAATAATGAAGGGAGAGGAACGAGGATGCTTTGNTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTTAGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACTGCTGGCAAGTATTAGTATGCGCCGNGCGTTCTCTNTTTTTTGACAGNTACAGNGNGCGNTTTATATTGNCAAAGGTTCCGTTNAAANAAGTTNTCATCGGGATGGTGCCNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5414#0 GCCGCCTCCGCTTCGATCGCTTCCTCCGTTGCCGCCGATCCCGCCGGCGAACGGCATGTG 60
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 GCCGTCGCTCCGGCGAGCAGCAGCCGCCGCCGGCGGCGCCAGGTTCAAGAATGTTTCTCA 120
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TTTGCTTCCTACATGTTCTGGATTAATGGATAATAACCTGAATGGTGGTTCTTTGAGGGG 180
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TCTGGGAGAAATTGGCTGCCAGGTGTCTTGTCAAGAACTCCCATTTGGTTATTCAGGAAC 240
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TGGTTTCCCCTCGATTCGAAGACTTTCCTCAGAGCCTGCAGAAAGGCCATTCAGAAACAA 300
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 AAATGATAGTGAGATATTGGGGGACGATGCGTCTGATCAACTACCAGATGACAACTTGGA 360
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 ATGTGATGACGAACTTGATCAACATAATGTTATGATTGATGCGAGTGAGACGAAGGCTAA 420
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 GAATCTAAGGTCCCAGTTTCCTGCAATAGATCGTAGTGGTGACACAAAACTGCAAAATAA 480
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 AACCTACAGGTCTTATCTTTTCCAAATTGTGTTGGATGCTCCCTCAAATTCTCTCAGGCA 540
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TGTGCTCGATAAGTGGATTGAAGATGGTAACCAGCTTGAAAGAAACGACGCTATGCTGGT 600
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TTTGTTTCACCTCAAGAAACAACATATGTATCGGAAGGCTTTGCAGGAATGAGGTACTCT 660
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 ATGAAACTCTAATTGTGAACAGTGTGTTGGCGGGCGATATCCAGAAAGCAGAAGAAGTCT 720
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TCAAGGAAATAAAAGACCTATGTTTGCGTTTAACTGTCACCCTCTGCAACCAAATGATAC 780
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TGCTATACAAGAGGATTGCTCCTGGAAAGGTAGCTAGCGTACTCATGCTGATGGAAAAGG 840
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 AAAATGTCAAGCCTTCTGCCTTTACATACAGACTGCTGATTGACTTGAAAGGGCGGTCAA 900
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 ATGACCTGGCAGGCATTGAGGTGGTCTTAAATGAGATGAAGGCTTATGGCATTGAGCCAT 960
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 CTACTTCAACTCAAACAATGGTTGCTAGGTTCTACATCCATGGTGGGCTCACAGAGAAAG 1020
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 CGGAAGCAGTTGTGAAGGAGATGGAAGCGCAGCTCTCGAATTCAAAGGACGGACGGCATG 1080
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TCATCAAATCTCTTCTTCACCTCTATGCTGCCCTCAACAAGCCAAATGATGTGGCCAGAA 1140
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TATGGGAAATGTGCACAGAACCTATGCTGGAGGATTTCTTGTCTGCAATCAAGGCATGGG 1200
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 GTGAACTCGGGCTTATTGAAAAAGCAGAGGAGACCTTTGAGGCGATGGCGAACGCACCAG 1260
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 AAAAGCTATCTTCCAAGTACTACAATGCGATGCTGAATGTGTACGCGCAGAATAAACTTC 1320
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TTTCTAAGGGCAAACAGTTTGTGGAAAGGATGTGCCGTGATGGGTGCCCGAACGGTCCTC 1380
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 TAACCTGGGATGCACTCATCAATCTCTATGTGAATTCAGGTGAGGTGGAGAAAGCCGACT 1440
consensus_5414#1 ------------------------------------------------------------
consensus_5414#0 CATTCCTCCTGAATGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACT 1500
consensus_5414#1 -ACGAGACAAGGGGGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACT 59
* * * **********************************************
consensus_5414#0 TCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTG 1560
consensus_5414#1 TCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTG 119
************************************************************
consensus_5414#0 ATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAG 1620
consensus_5414#1 ATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAG 179
************************************************************
consensus_5414#0 CGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGATGAGAGGTGACAATG 1680
consensus_5414#1 CGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGACGAGAGGTGACAATG 239
********************************************* **************
consensus_5414#0 TGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAG 1740
consensus_5414#1 TGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAG 299
************************************************************
consensus_5414#0 GCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAG 1800
consensus_5414#1 GCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAG 359
************************************************************
consensus_5414#0 TAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATT 1860
consensus_5414#1 TAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATT 419
************************************************************
consensus_5414#0 TTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATAT 1920
consensus_5414#1 TTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATAT 479
************************************************************
consensus_5414#0 TACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCA 1980
consensus_5414#1 TACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCA 539
************************************************************
consensus_5414#0 CTTCACCTAATGATGGTTTTTTTTAAAAAAAAAAACACCTGATGCTCTAAATAATGAAGG 2040
consensus_5414#1 CTTCACCTAATGATGGTTTTTTTTAAAAAAAAAA-CACCTGATGCTCTAAATAATGAAGG 598
********************************** *************************
consensus_5414#0 GAGAGGAACGAGGATGCTTTGTTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTT 2100
consensus_5414#1 GAGAGGAACGAGGATGCTTTGNTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTT 658
********************* **************************************
consensus_5414#0 AGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACT--- 2157
consensus_5414#1 AGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACTGCT 718
*********************************************************
consensus_5414#0 ------------------------------------------------------------
consensus_5414#1 GGCAAGTATTAGTATGCGCCGNGCGTTCTCTNTTTTTTGACAGNTACAGNGNGCGNTTTA 778
consensus_5414#0 ------------------------------------------------
consensus_5414#1 TATTGNCAAAGGTTCCGTTNAAANAAGTTNTCATCGGGATGGTGCCNT 826
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||