These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2157 fasta sequence [GCCGCCTCCGCTTCGATCGCTTCCTCCGTTGCCGCCGATCCCGCCGGCGAACGGCATGTGGCCGTCGCTCCGGCGAGCAGCAGCCGCCGCCGGCGGCGCCAGGTTCAAGAATGTTTCTCATTTGCTTCCTACATGTTCTGGATTAATGGATAATAACCTGAATGGTGGTTCTTTGAGGGGTCTGGGAGAAATTGGCTGCCAGGTGTCTTGTCAAGAACTCCCATTTGGTTATTCAGGAACTGGTTTCCCCTCGATTCGAAGACTTTCCTCAGAGCCTGCAGAAAGGCCATTCAGAAACAAAAATGATAGTGAGATATTGGGGGACGATGCGTCTGATCAACTACCAGATGACAACTTGGAATGTGATGACGAACTTGATCAACATAATGTTATGATTGATGCGAGTGAGACGAAGGCTAAGAATCTAAGGTCCCAGTTTCCTGCAATAGATCGTAGTGGTGACACAAAACTGCAAAATAAAACCTACAGGTCTTATCTTTTCCAAATTGTGTTGGATGCTCCCTCAAATTCTCTCAGGCATGTGCTCGATAAGTGGATTGAAGATGGTAACCAGCTTGAAAGAAACGACGCTATGCTGGTTTTGTTTCACCTCAAGAAACAACATATGTATCGGAAGGCTTTGCAGGAATGAGGTACTCTATGAAACTCTAATTGTGAACAGTGTGTTGGCGGGCGATATCCAGAAAGCAGAAGAAGTCTTCAAGGAAATAAAAGACCTATGTTTGCGTTTAACTGTCACCCTCTGCAACCAAATGATACTGCTATACAAGAGGATTGCTCCTGGAAAGGTAGCTAGCGTACTCATGCTGATGGAAAAGGAAAATGTCAAGCCTTCTGCCTTTACATACAGACTGCTGATTGACTTGAAAGGGCGGTCAAATGACCTGGCAGGCATTGAGGTGGTCTTAAATGAGATGAAGGCTTATGGCATTGAGCCATCTACTTCAACTCAAACAATGGTTGCTAGGTTCTACATCCATGGTGGGCTCACAGAGAAAGCGGAAGCAGTTGTGAAGGAGATGGAAGCGCAGCTCTCGAATTCAAAGGACGGACGGCATGTCATCAAATCTCTTCTTCACCTCTATGCTGCCCTCAACAAGCCAAATGATGTGGCCAGAATATGGGAAATGTGCACAGAACCTATGCTGGAGGATTTCTTGTCTGCAATCAAGGCATGGGGTGAACTCGGGCTTATTGAAAAAGCAGAGGAGACCTTTGAGGCGATGGCGAACGCACCAGAAAAGCTATCTTCCAAGTACTACAATGCGATGCTGAATGTGTACGCGCAGAATAAACTTCTTTCTAAGGGCAAACAGTTTGTGGAAAGGATGTGCCGTGATGGGTGCCCGAACGGTCCTCTAACCTGGGATGCACTCATCAATCTCTATGTGAATTCAGGTGAGGTGGAGAAAGCCGACTCATTCCTCCTGAATGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACTTCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTGATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAGCGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGATGAGAGGTGACAATGTGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAGGCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAGTAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATTTTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATATTACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCACTTCACCTAATGATGGTTTTTTTTAAAAAAAAAAACACCTGATGCTCTAAATAATGAAGGGAGAGGAACGAGGATGCTTTGTTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTTAGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACT] [+] EMBL AK102206 [GCCGCCTCCGCTTCGATCGCTTCCTCCGTTGCCGCCGATCCCGCCGGCGAACGGCATGTGGCCGTCGCTCCGGCGAGCAGCAGCCGCCGCCGGCGGCGCCAGGTTCAAGAATGTTTCTCATTTGCTTCCTACATGTTCTGGATTAATGGATAATAACCTGAATGGTGGTTCTTTGAGGGGTCTGGGAGAAATTGGCTGCCAGGTGTCTTGTCAAGAACTCCCATTTGGTTATTCAGGAACTGGTTTCCCCTCGATTCGAAGACTTTCCTCAGAGCCTGCAGAAAGGCCATTCAGAAACAAAAATGATAGTGAGATATTGGGGGACGATGCGTCTGATCAACTACCAGATGACAACTTGGAATGTGATGACGAACTTGATCAACATAATGTTATGATTGATGCGAGTGAGACGAAGGCTAAGAATCTAAGGTCCCAGTTTCCTGCAATAGATCGTAGTGGTGACACAAAACTGCAAAATAAAACCTACAGGTCTTATCTTTTCCAAATTGTGTTGGATGCTCCCTCAAATTCTCTCAGGCATGTGCTCGATAAGTGGATTGAAGATGGTAACCAGCTTGAAAGAAACGACGCTATGCTGGTTTTGTTTCACCTCAAGAAACAACATATGTATCGGAAGGCTTTGCAGGAATGAGGTACTCTATGAAACTCTAATTGTGAACAGTGTGTTGGCGGGCGATATCCAGAAAGCAGAAGAAGTCTTCAAGGAAATAAAAGACCTATGTTTGCGTTTAACTGTCACCCTCTGCAACCAAATGATACTGCTATACAAGAGGATTGCTCCTGGAAAGGTAGCTAGCGTACTCATGCTGATGGAAAAGGAAAATGTCAAGCCTTCTGCCTTTACATACAGACTGCTGATTGACTTGAAAGGGCGGTCAAATGACCTGGCAGGCATTGAGGTGGTCTTAAATGAGATGAAGGCTTATGGCATTGAGCCATCTACTTCAACTCAAACAATGGTTGCTAGGTTCTACATCCATGGTGGGCTCACAGAGAAAGCGGAAGCAGTTGTGAAGGAGATGGAAGCGCAGCTCTCGAATTCAAAGGACGGACGGCATGTCATCAAATCTCTTCTTCACCTCTATGCTGCCCTCAACAAGCCAAATGATGTGGCCAGAATATGGGAAATGTGCACAGAACCTATGCTGGAGGATTTCTTGTCTGCAATCAAGGCATGGGGTGAACTCGGGCTTATTGAAAAAGCAGAGGAGACCTTTGAGGCGATGGCGAACGCACCAGAAAAGCTATCTTCCAAGTACTACAATGCGATGCTGAATGTGTACGCGCAGAATAAACTTCTTTCTAAGGGCAAACAGTTTGTGGAAAGGATGTGCCGTGATGGGTGCCCGAACGGTCCTCTAACCTGGGATGCACTCATCAATCTCTATGTGAATTCAGGTGAGGTGGAGAAAGCCGACTCATTCCTCCTGAATGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACTTCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTGATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAGCGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGATGAGAGGTGACAATGTGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAGGCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAGTAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATTTTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATATTACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCACTTCACCTAATGATGGTTTTTTTTAAAAAAAAAAACACCTGATGCTCTAAATAATGAAGGGAGAGGAACGAGGATGCTTTGTTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTTAGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACT] [-] EMBL AW069915 [ GAGAAAGCGGAAGCAGTTGTGAAGGAGATGGAAGCGCAGCTCTCGAATTCAAAGGACGGACGGCATGTCATCAAATCTCTTCTTCACCTCTATGCTGCCCTCAACAAGCCAAATGATGTGGCCAGAATATGGGAAATGTGCACAGAACCTATGCTGGAGGATTTCTTGTCTGCAATCAAGGCATGGGGTGAACTCGGGCTTATTGAAAAAGCAGAGGAGACCTTTGAGGCGATGGCGAACGCACCAGAAAAGCTATCTTCCAAGTACctgcc ] consensusID : consensus_5414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence [ACGAGACAAGGGGGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACTTCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTGATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAGCGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGACGAGAGGTGACAATGTGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAGGCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAGTAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATTTTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATATTACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCACTTCACCTAATGATGGTTTTTTTTAAAAAAAAAACACCTGATGCTCTAAATAATGAAGGGAGAGGAACGAGGATGCTTTGNTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTTAGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACTGCTGGCAAGTATTAGTATGCGCCGNGCGTTCTCTNTTTTTTGACAGNTACAGNGNGCGNTTTATATTGNCAAAGGTTCCGTTNAAANAAGTTNTCATCGGGATGGTGCCNT] [+] EMBL CA765951 [ACGAGACAAGGGGGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACTTCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTGATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAGCGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGACGAGAGGTGACAATGTGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAGGCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAGTAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATTTTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATATTACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCACTTCACCTAATGATGGTTTTTTTTAAAAAAAAAACACCTGATGCTCTAAATAATGAAGGGAGAGGAACGAGGATGCTTTGNTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTTAGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACTGCTGGCAAGTATTAGTATGCGCCGNGCGTTCTCTNTTTTTTGACAGNTACAGNGNGCGNTTTATATTGNCAAAGGTTCCGTTNAAANAAGTTNTCATCGGGATGGTGCCNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5414#0 GCCGCCTCCGCTTCGATCGCTTCCTCCGTTGCCGCCGATCCCGCCGGCGAACGGCATGTG 60 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 GCCGTCGCTCCGGCGAGCAGCAGCCGCCGCCGGCGGCGCCAGGTTCAAGAATGTTTCTCA 120 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TTTGCTTCCTACATGTTCTGGATTAATGGATAATAACCTGAATGGTGGTTCTTTGAGGGG 180 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TCTGGGAGAAATTGGCTGCCAGGTGTCTTGTCAAGAACTCCCATTTGGTTATTCAGGAAC 240 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TGGTTTCCCCTCGATTCGAAGACTTTCCTCAGAGCCTGCAGAAAGGCCATTCAGAAACAA 300 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 AAATGATAGTGAGATATTGGGGGACGATGCGTCTGATCAACTACCAGATGACAACTTGGA 360 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 ATGTGATGACGAACTTGATCAACATAATGTTATGATTGATGCGAGTGAGACGAAGGCTAA 420 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 GAATCTAAGGTCCCAGTTTCCTGCAATAGATCGTAGTGGTGACACAAAACTGCAAAATAA 480 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 AACCTACAGGTCTTATCTTTTCCAAATTGTGTTGGATGCTCCCTCAAATTCTCTCAGGCA 540 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TGTGCTCGATAAGTGGATTGAAGATGGTAACCAGCTTGAAAGAAACGACGCTATGCTGGT 600 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TTTGTTTCACCTCAAGAAACAACATATGTATCGGAAGGCTTTGCAGGAATGAGGTACTCT 660 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 ATGAAACTCTAATTGTGAACAGTGTGTTGGCGGGCGATATCCAGAAAGCAGAAGAAGTCT 720 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TCAAGGAAATAAAAGACCTATGTTTGCGTTTAACTGTCACCCTCTGCAACCAAATGATAC 780 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TGCTATACAAGAGGATTGCTCCTGGAAAGGTAGCTAGCGTACTCATGCTGATGGAAAAGG 840 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 AAAATGTCAAGCCTTCTGCCTTTACATACAGACTGCTGATTGACTTGAAAGGGCGGTCAA 900 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 ATGACCTGGCAGGCATTGAGGTGGTCTTAAATGAGATGAAGGCTTATGGCATTGAGCCAT 960 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 CTACTTCAACTCAAACAATGGTTGCTAGGTTCTACATCCATGGTGGGCTCACAGAGAAAG 1020 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 CGGAAGCAGTTGTGAAGGAGATGGAAGCGCAGCTCTCGAATTCAAAGGACGGACGGCATG 1080 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TCATCAAATCTCTTCTTCACCTCTATGCTGCCCTCAACAAGCCAAATGATGTGGCCAGAA 1140 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TATGGGAAATGTGCACAGAACCTATGCTGGAGGATTTCTTGTCTGCAATCAAGGCATGGG 1200 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 GTGAACTCGGGCTTATTGAAAAAGCAGAGGAGACCTTTGAGGCGATGGCGAACGCACCAG 1260 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 AAAAGCTATCTTCCAAGTACTACAATGCGATGCTGAATGTGTACGCGCAGAATAAACTTC 1320 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TTTCTAAGGGCAAACAGTTTGTGGAAAGGATGTGCCGTGATGGGTGCCCGAACGGTCCTC 1380 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 TAACCTGGGATGCACTCATCAATCTCTATGTGAATTCAGGTGAGGTGGAGAAAGCCGACT 1440 consensus_5414#1 ------------------------------------------------------------ consensus_5414#0 CATTCCTCCTGAATGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACT 1500 consensus_5414#1 -ACGAGACAAGGGGGTGGCAGAAGAAAATCCTGACAGAAAGCCGCTTTTCACCTCGTACT 59 * * * ********************************************** consensus_5414#0 TCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTG 1560 consensus_5414#1 TCTTCTTGATGAAGGGATATGCGAAAAGGGGTGATATCCATAACACTGAGAAGATATTTG 119 ************************************************************ consensus_5414#0 ATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAG 1620 consensus_5414#1 ATAGGCTGAAGAATGTCGGGTACGCACCAAGGCCACTACATTATGCTGTTCTTCTTGAAG 179 ************************************************************ consensus_5414#0 CGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGATGAGAGGTGACAATG 1680 consensus_5414#1 CGTATGTCAATGCCAAAGTTCCAGCCCATGGGTTCTTGGAGAGGACGAGAGGTGACAATG 239 ********************************************* ************** consensus_5414#0 TGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAG 1740 consensus_5414#1 TGCGCCCAACAAAGAAAATCGTTACATCTCTTGACACCTTACAGAAAGGATGGATTGCAG 299 ************************************************************ consensus_5414#0 GCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAG 1800 consensus_5414#1 GCTTAGACTGAATTTTCTCTCTTTTGTTCTTGGGATGGATCACACGATGCATTTCTTGAG 359 ************************************************************ consensus_5414#0 TAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATT 1860 consensus_5414#1 TAGTTTTACAGAACAGAGACTACTTGGAGCCCGGTAAACTGCACAGCAGAAGAATCAATT 419 ************************************************************ consensus_5414#0 TTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATAT 1920 consensus_5414#1 TTGCTTTTGATGTCTTCCAGATTTGATTTTGTGCTCTTGGTAGAGATGATGTTCTGATAT 479 ************************************************************ consensus_5414#0 TACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCA 1980 consensus_5414#1 TACATTATTATGGTCATTGTTTTAGGATGCCACTATTAGGCTATTATTCTGAGTTGGGCA 539 ************************************************************ consensus_5414#0 CTTCACCTAATGATGGTTTTTTTTAAAAAAAAAAACACCTGATGCTCTAAATAATGAAGG 2040 consensus_5414#1 CTTCACCTAATGATGGTTTTTTTTAAAAAAAAAA-CACCTGATGCTCTAAATAATGAAGG 598 ********************************** ************************* consensus_5414#0 GAGAGGAACGAGGATGCTTTGTTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTT 2100 consensus_5414#1 GAGAGGAACGAGGATGCTTTGNTTAGGACATTTGCTTCCTTGCCATCAAATTATAGGCTT 658 ********************* ************************************** consensus_5414#0 AGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACT--- 2157 consensus_5414#1 AGATTTTGACAATGGAACAAATTACTTCTAGATTCAAAATTGGAATTATGTAAAACTGCT 718 ********************************************************* consensus_5414#0 ------------------------------------------------------------ consensus_5414#1 GGCAAGTATTAGTATGCGCCGNGCGTTCTCTNTTTTTTGACAGNTACAGNGNGCGNTTTA 778 consensus_5414#0 ------------------------------------------------ consensus_5414#1 TATTGNCAAAGGTTCCGTTNAAANAAGTTNTCATCGGGATGGTGCCNT 826 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||