These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1049 fasta sequence [TTTCTCCATCAATAATGGCGGGACGACGACGACGCCCATTCGCTGCTCCGGTCATCAACTATCTCCTCCTAGCCCTGTGGCTCGCCGCGTCGTCGTCGTTCGCCGTCGCCGTCGCCGTCGCCGGCCATGGCCGCGGTCGCCGCAGCCATGTGTCGTCGATCGTGACGGAGGAGATGTACAACAAGTCGCTGTTCATCCACAAGGACGACGCCGCCTGCCCGGCGAGGAACTTCTACACCTACGCCGCCTTCCTCCGCGCCGCCGACCAGTACCCGAGCTTCGGCGGCGCCGGCGGCCGCGACACGCGCCGGCGGGAGGTCGCCGCCTTCCTCGCGCAGGTCTCCCACGAGACCACCGGCGGCTGGGCCACCGCCCCCGATGGGCCCTACACCTGGGGCCTCTGCTTCAAGGAGGAGCTCAAGCCGGCGAGCAACTACTGCGACGCCGCCGTCGCCGCGCGGTGGCCGTGCTTCCCCGGCAAGTCGTACCATGGCCGCGGCCCCATCCAGCTGTCGTGGAACTTCAACTACGGGCCGGCCGGCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGGTGGTCGCCGGCGACGCCGTGGTGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCGGCCGCCGTCGAAGCCGTACTCGTGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGAGGGCCGACGCGGCGGCGAACCGGACGGCGGCCGGGTTCGGGCTGACGACGAACATCATCAATGGCGGACTCGAGTGCAACAACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCGGATTCTTCCGGCGATACTGCGGCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCGCACACCAGTTGCCCTACTCATAATCGCGATTTGTTCATTGCTACTATTACGACATCCTTTTTTTTTGTTTTACTTCTTGATGATGTTTAATTAGTTTACTTGATTATGTTTCTTTCAATAATGCAAATCAAAAGTTCCAATAATGAAAAAATTGGTTAATAGGATCGACA] [+] EMBL AK101475 [TTTCTCCATCAATAATGGCGGGACGACGACGACGCCCATTCGCTGCTCCGGTCATCAACTATCTCCTCCTAGCCCTGTGGCTCGCCGCGTCGTCGTCGTTCGCCGTCGCCGTCGCCGTCGCCGGCCATGGCCGCGGTCGCCGCAGCCATGTGTCGTCGATCGTGACGGAGGAGATGTACAACAAGTCGCTGTTCATCCACAAGGACGACGCCGCCTGCCCGGCGAGGAACTTCTACACCTACGCCGCCTTCCTCCGCGCCGCCGACCAGTACCCGAGCTTCGGCGGCGCCGGCGGCCGCGACACGCGCCGGCGGGAGGTCGCCGCCTTCCTCGCGCAGGTCTCCCACGAGACCACCGGCGGCTGGGCCACCGCCCCCGATGGGCCCTACACCTGGGGCCTCTGCTTCAAGGAGGAGCTCAAGCCGGCGAGCAACTACTGCGACGCCGCCGTCGCCGCGCGGTGGCCGTGCTTCCCCGGCAAGTCGTACCATGGCCGCGGCCCCATCCAGCTGTCGTGGAACTTCAACTACGGGCCGGCCGGCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGGTGGTCGCCGGCGACGCCGTGGTGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCGGCCGCCGTCGAAGCCGTACTCGTGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGAGGGCCGACGCGGCGGCGAACCGGACGGCGGCCGGGTTCGGGCTGACGACGAACATCATCAATGGCGGACTCGAGTGCAACAACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCGGATTCTTCCGGCGATACTGCGGCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCGCACACCAGTTGCCCTACTCATAATCGCGATTTGTTCATTGCTACTATTACGACATCCTTTTTTTTTGTTTTACTTCTTGATGATGTTTAATTAGTTTACTTGATTATGTTTCTTTCAATAATGCAAAT ] [+] EMBL AK110261 [ TCTCCATCAATAATGGCGGGACGACGACGACGCCCATTCGCTGCTCCGGTCATCAACTATCTCCTCCTAGCCCTGTGGCTCGCCGCGTCGTCGTCGTTCGCCGTCGCCGTCGCCGTCGCCGGCCATGGCCGCGGTCGCCGCAGCCATGTGTCGTCGATCGTGACGGAGGCGATGTACAACAAGTCGCTGTTCATCCACAAGGACGACGCCGCCTGCCCGGCGAGGAACTTCTACACCTACGCCGCCTTCCTCCGCGCCGCCGACCAGTACCCGAGCTTCGGCGGCGCCGGCGGCCGCGACACGCGCCGGCGGGAGGTCGCCGCCTTCCTCGCGCAGGTCTCCCACGAGACCACCGGCGGCTGGGCCACCGCCCCCGATGGGCCCTACACCTGGGGCCTCTGCTTCAAGGAGGAGCTCAAGCCGGCGAGCAACTACTGCGACGCCGCCGTCGCCGCGCGGTGGCCGTGCTTCCCCGGCAAGTCGTACCATGGCCGCGGCCCCATCCAGCTGTCGTGGAACTTCAACTACGGGCCGGCCGGCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGGTGGTCGCCGGCGACGCCGTGGTGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCGGCCGCCGTCGAAGCCGTACTCGTGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGAGGGCCGACGCGGCGGCGAACCGGACGGCGGCCGGGTTCGGGCTGACGACGAACATCATCAATGGCGGACTCGAGTGCAACAACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCGGATTCTTCCGGCGATACTGCGGCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCGCACACCAGTTGCCCTACTCATAATCGCGATTTGTTCATTGCTACTATTACGACATCCTTTTTTTTTGTTTTACTTCTTGATGATGTTTAATTAGTTTACTTGATTATGTTTCTTTCAATAATGCAAATCAAAAGTTCCAATAATGAAAAAATTGGTTAATAGGATCGACA] consensusID : consensus_5415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1036 fasta sequence [TATCACAGTCACAGCTGCAGCCATGGCGAAGCCCACTCCTGCTCCTCGCGCCACACCATTCCTCCTCGCCGCCGTGCTCTCCATCGTCGTCGTCGCGGCCTCCGGCGCGGAGGCGCGGTGGTACGGCGGCGGCGGCGGCGGCGGGTACAGCCCCAGCCCCAGCCCGGTGTCGTCGATCGTCAGCGAGCAGCTGTACGCCTCCCTGTTCCTGCACAAGGACGACGCGGCCTGCCCGGCGAGGGGGTTCTACACCTACGCGTCCTTCGTCAGGGCCGCGACGAGGTTCCCCCGGTTCGCCGCCACGGGCTGCGCCGACGCCCGCAAGCGCGAGGTCGCCGCCTTCCTCGCGCAGATCTCCCACGAGACCACCGGCGGCTGGGCCACCGCGCCCGACGGCCCCTACGCCTGGGGCCTCTGCTACAAGGAGGAGATCAACCCGCAGAGCAGCTACTGCGACGCCACCGACAAGCAGTGGCCGTGCTACCCCGGCAAGTCCTACCATGGCCGAGGCCCCATCCAAATCTCATGGAACTTCAACTACGGGCCGGCGGGCCAGGCCCTGGGCTTCGATGGTCTGCGCAACCCGGAGATCGTGGCCAACTGCTCGGACATAGCGTTCCAGACGGCGCTGTGGTTCTGGATGACGCCGAGGGACACCAAGCCGTCGTGCCACCAGGTGATGGTCGGGGAGTACCGGCCCGGCCCGGCCGACGTGGCGGCTAACCGCACGGCGGGCTTCGGGCTGGTCACCAACATCGTCAACGGCGGGCTCGAGTGCAACCGGGCAGGCGACGCCCGGGTGAACAACCGCATCGGCTTCTACCGGCGCTACTGCCAGGTGCTCGGCGTCGACGTCGGGCCCAACCTCGACTGCGAGCACCAGCAGCCCTTCTAGCTTGCTATAAAAATTCATGTCGTTTCTCATGTCGCTGCTTGCGATTAGCTGTAAGATTTAATTTTAAGTGTTGTTGCGTGAACTGTGTACACGCCGTCTTGTTTTGTCTCATTCATTGGAAATTGGAATCAAGGAAAACTG] [+] EMBL AK063062 [TATCACAGTCACAGCTGCAGCCATGGCGAAGCCCACTCCTGCTCCTCGCGCCACACCATTCCTCCTCGCCGCCGTGCTCTCCATCGTCGTCGTCGCGGCCTCCGGCGCGGAGGCGCGGTGGTACGGCGGCGGCGGCGGCGGCGGGTACAGCCCCAGCCCCAGCCCGGTGTCGTCGATCGTCAGCGAGCAGCTGTACGCCTCCCTGTTCCTGCACAAGGACGACGCGGCCTGCCCGGCGAGGGGGTTCTACACCTACGCGTCCTTCGTCAGGGCCGCGACGAGGTTCCCCCGGTTCGCCGCCACGGGCTGCGCCGACGCCCGCAAGCGCGAGGTCGCCGCCTTCCTCGCGCAGATCTCCCACGAGACCACCGGCGGCTGGGCCACCGCGCCCGACGGCCCCTACGCCTGGGGCCTCTGCTACAAGGAGGAGATCAACCCGCAGAGCAGCTACTGCGACGCCACCGACAAGCAGTGGCCGTGCTACCCCGGCAAGTCCTACCATGGCCGAGGCCCCATCCAAATCTCATGGAACTTCAACTACGGGCCGGCGGGCCAGGCCCTGGGCTTCGATGGTCTGCGCAACCCGGAGATCGTGGCCAACTGCTCGGACATAGCGTTCCAGACGGCGCTGTGGTTCTGGATGACGCCGAGGGACACCAAGCCGTCGTGCCACCAGGTGATGGTCGGGGAGTACCGGCCCGGCCCGGCCGACGTGGCGGCTAACCGCACGGCGGGCTTCGGGCTGGTCACCAACATCGTCAACGGCGGGCTCGAGTGCAACCGGGCAGGCGACGCCCGGGTGAACAACCGCATCGGCTTCTACCGGCGCTACTGCCAGGTGCTCGGCGTCGACGTCGGGCCCAACCTCGACTGCGAGCACCAGCAGCCCTTCTAGCTTGCTATAAAAATTCATGTCGTTTCTCATGTCGCTGCTTGCGATTAGCTGTAAGATTTAATTTTAAGTGTTGTTGCGTGAACTGTGTACACGCCGTCTTGTTTTGTCTCATTCATTGGAAATTGGAATCAAGGAAAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5415#0 TTTCTCCATCAATAATGGCGGGACGACGACGACGCCCATTCGCTGCTCCGGTCATCAACT 60 consensus_5415#1 TATCACAGTCA-CAGCTGCAG--CCATGGCGAAGCCCACTC-CTGCTCCTCGCGCCACAC 56 * ** * *** * ** * * * * *** ***** ** ******* * ** consensus_5415#0 ATCTCCTCCTAGCCCTGTGGCTCGCCG-CGTCGTCGTCGT--TCGCCGTCGC-------- 109 consensus_5415#1 CATTCCTCCTCGCCGCCGTGCTCTCCATCGTCGTCGTCGCGGCCTCCGGCGCGGAGGCGC 116 ******* *** **** ** *********** * *** *** consensus_5415#0 -------CGTCGCCGTCGCCGGCCATGGCCGCGGTC---GCCGCAGCCATGTGTCGTCGA 159 consensus_5415#1 GGTGGTACGGCGGCGGCGGCGGCGGCGGGTACAGCCCCAGCCCCAGCCCGGTGTCGTCGA 176 ** ** ** ** **** ** * * * *** ***** ********** consensus_5415#0 TCGTGACGGAGGAGATGTACAACAAGTCGCTGTTCATCCACAAGGACGACGCCGCCTGCC 219 consensus_5415#1 TCGTCAGCGAGCAGCTGTACGCC---TCCCTGTTCCTGCACAAGGACGACGCGGCCTGCC 233 **** * *** ** ***** * ** ****** * ************** ******* consensus_5415#0 CGGCGAGGAACTTCTACACCTACGCCGCCTTCCTCCGCGCCGCCGACCAGTACCCGAGCT 279 consensus_5415#1 CGGCGAGGGGGTTCTACACCTACGCGTCCTTCGTCAGGGCCGCGACGAGGTTCCCCCGGT 293 ******** ************** ***** ** * ***** ** *** * * consensus_5415#0 TCGGCGGCGCCGGCGGCCGCGACACGCGCCGGCGGGAGGTCGCCGCCTTCCTCGCGCAGG 339 consensus_5415#1 TCGCCGCCACGGGCTGCGCCGACGCCCGCAAGCGCGAGGTCGCCGCCTTCCTCGCGCAGA 353 *** ** * * *** ** **** * *** *** ************************ consensus_5415#0 TCTCCCACGAGACCACCGGCGGCTGGGCCACCGCCCCCGATGGGCCCTACACCTGGGGCC 399 consensus_5415#1 TCTCCCACGAGACCACCGGCGGCTGGGCCACCGCGCCCGACGGCCCCTACGCCTGGGGCC 413 ********************************** ***** ** ****** ********* consensus_5415#0 TCTGCTTCAAGGAGGAGCTCAAGCCGGCGAGCAACTACTGCGACGCCGCCGTCGCCGCGC 459 consensus_5415#1 TCTGCTACAAGGAGGAGATCAACCCGCAGAGCAGCTACTGCGACGCCACCGACAA---GC 470 ****** ********** **** *** ***** ************* *** * ** consensus_5415#0 GGTGGCCGTGCTTCCCCGGCAAGTCGTACCATGGCCGCGGCCCCATCCAGCTGTCGTGGA 519 consensus_5415#1 AGTGGCCGTGCTACCCCGGCAAGTCCTACCATGGCCGAGGCCCCATCCAAATCTCATGGA 530 *********** ************ *********** *********** * ** **** consensus_5415#0 ACTTCAACTACGGGCCGGCCGGCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGG 579 consensus_5415#1 ACTTCAACTACGGGCCGGCGGGCCAGGCCCTGGGCTTCGATGGTCTGCGCAACCCGGAGA 590 ******************* *** **** **** ***** ** ** ** * ****** consensus_5415#0 TGGTCGCCGGCGACGCCGTGGTGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGC 639 consensus_5415#1 TCGTGGCCAACTGCTCGGACATAGCGTTCCAGACGGCGCTGTGGTTCTGGATGACGCCGA 650 * ** *** * * * * * ****** ***************************** consensus_5415#0 GGCCGCCGTCGAAGCCGTACTCGTGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGA 699 consensus_5415#1 GG--GACACC-AAGCCG---TCGTGCCACCAGGTGATGGTCGGGGAGTACCGGCCCGGCC 704 ** * * * ****** ********* * ****** *** ********* consensus_5415#0 GGGCCGACGCGGCGGCGAACCGGACGGCGGCCGGGTTCGGGCTGACGACGAACATCATCA 759 consensus_5415#1 CGGCCGACGTGGCGGCTAACCGCACGGCGG---GCTTCGGGCTGGTCACCAACATCGTCA 761 ******** ****** ***** ******* * ********* ** ****** *** consensus_5415#0 ATGGCGGACTCGAGTGCAACAACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCG 819 consensus_5415#1 ACGGCGGGCTCGAGTGCAA---CCGGGCAGGCGACG---CCCGGGTGAACAACCGCATCG 815 * ***** *********** *** * **** ** ******** * **** **** consensus_5415#0 GATTCTTCCGGCGATACTGCGGCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCG 879 consensus_5415#1 GCTTCTACCGGCGCTACTGCCAGGTGCTCGGCGTCGACGTCGGGCCCAACCTCGACTGCG 875 * **** ****** ****** * ************ ***** ************** consensus_5415#0 CACACCAGTTGCCCT----ACTCATAATCGCGATTTGT-TCATTGCTACTATTACGACAT 934 consensus_5415#1 AGCACCAGCAGCCCTTCTAGCTTGCTATAAAAATTCATGTCGTTTCTCATGTCGCTGCTT 935 ****** ***** ** ** *** * ** ** ** * * * * * consensus_5415#0 CCTTTT---TTTTTGTTTTACTTCTTGATGATGTTTAATTAGTTTACTTGATTATGTTTC 991 consensus_5415#1 GCGATTAGCTGTAAGATTTAATTTTAAGTGTTGTTGCGTGAACTGTGTACACGCCGTCTT 995 * ** * * * **** ** * ** **** * * * * * ** * consensus_5415#0 TTTCAATAATGCAAATCAAAAGTTCCAATAATGAAAAAATTGGTTAATAGGATCGACA 1049 consensus_5415#1 GTTTTGTCTCATTCATTGGAAATTGGAATCAAGGAAAACTG----------------- 1036 ** * ** ** ** *** * * **** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||