Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5427 cluster # 5427       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5427#0 length = 1344 sequences # 3  
consensusID : consensus_5427#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1344
fasta sequence 
                              [TACTCATGGGTGTCTTTCAAAAGGGAGAAGATCAGAAAGGAGAGAGTGCAAATATGAAGCCTATACCTCTTCTAAGTTCTTATGATATGGGGAAGTTCAACTTGTCACACAGGGTTGTGCTAGCACCACTAACAAGATCTAGATCATATGACAATCTCCCGCAATCACATGCCATGGAATACTACTCACAGAGGGCAACCAAAGGAGGCCTTCTAATTGCTGAAGCTACAGGTGTGTCATCTGATGCACAAGGGATGAGTGTAATCCCTCACACCCCAGGGATATGGACCAAGGAACAAGTAGAGGCATGGAAGCCTATTGTAGATGCAGTGCATGCTAAGGGTGGTATATTTTTCTGTCAAATCTGGCATGTTGGAAGAGCATCGGACATGGAGGAACGGCCCATCTCAAGCACAGATAAACCCATAGAGAAGACTGAAGAGAACTACTTCCTGGGTTTCTCCACCCCAAGGAGCTTAACTGTTGAAGAGATCCCTGATGTCATCAAGCATTTCACACTTGCTGCCAAAAATGCCTTGGAGGCTGGTTTTGATGGGGTTGAGGTTCACGCCGCAAACGGCTTCCTCCTGGACCAGTTCATGAAGGACGGCGTCAACGCCCGCGCCGACGAGTACGGCGGCGGCGTGGCGGGCCGCTGCCGCTTCGCGCTGGAGGTGGTCGACGCCGTGGCGGCGGAGGCCGGGGCCGGCCGCACCGGCGTCCGCCTCTCCCCGTACTCCCGCTGCCTCGACTGCGCCGACTCCGACCCGGACGCGCTCGCCGCCCACATGGCGCGCGAGCTGGGCTCGCGCGGCGTCCTCTACTGCAACGTGGTGGAGCCGGAGATGGTGGCGACGCCGGCGGAGGGCGGCAGCGGCGGCGAGACGATGCGGATCCCGCACCGGCTGCGCGCCGTGCGGGAGGCGTTCGCCGGCACGCTGATGGTCGGCGGCGGGTACGACAGGGAGGAGGGCAACTGGGCCGTCGCCGGCGGCTACGCCGACCTCGTCGTCTACGGCCGCCTCTTCCTGGCCAACCCGGACCTCCCCCGGAGGTTCCGGCTCGGCGCGCCGCTCAACGGGTACGACAGGGCGACGTTCTACACCGCCGACCCCGTCGCCGGCTACACCGACTACCCGTTCCTCGACGACGACGGCGACGACGGCCTCGCGGCGTCGGCGGCGTCGGCGAGCTCCAACAAGAGCGGCGATCAGGACGGCGTTTAGCTCCGAGGCAGTACACTACTGCAACTGCACCTGAATAATTCTTAGCTTTTTTGCTGCTGCTTAAGCTTTAATAATGTTGACAATCGAGAGCTCTCTTCGTTGATCCAAACCAAAAAAA]

[+] EMBL AK106409             [TACTCATGGGTGTCTTTCAAAAGGGAGAAGATCAGAAAGGAGAGAGTGCAAATATGAAGCCTATACCTCTTCTAAGTTCTTATGATATGGGGAAGTTCAACTTGTCACACAGGGTTGTGCTAGCACCACTAACAAGATCTAGATCATATGACAATCTCCCGCAATCACATGCCATGGAATACTACTCACAGAGGGCAACCAAAGGAGGCCTTCTAATTGCTGAAGCTACAGGTGTGTCATCTGATGCACAAGGGATGAGTGTAATCCCTCACACCCCAGGGATATGGACCAAGGAACAAGTAGAGGCATGGAAGCCTATTGTAGATGCAGTGCATGCTAAGGGTGGTATATTTTTCTGTCAAATCTGGCATGTTGGAAGAGCATCGGACATGGAGGAACGGCCCATCTCAAGCACAGATAAACCCATAGAGAAGACTGAAGAGAACTACTTCCTGGGTTTCTCCACCCCAAGGAGCTTAACTGTTGAAGAGATCCCTGATGTCATCAAGCATTTCACACTTGCTGCCAAAAATGCCTTGGAGGCTGGTTTTGATGGGGTTGAGGTTCACGCCGCAAACGGCTTCCTCCTGGACCAGTTCATGAAGGACGGCGTCAACGCCCGCGCCGACGAGTACGGCGGCGGCGTGGCGGGCCGCTGCCGCTTCGCGCTGGAGGTGGTCGACGCCGTGGCGGCGGAGGCCGGGGCCGGCCGCACCGGCGTCCGCCTCTCCCCGTACTCCCGCTGCCTCGACTGCGCCGACTCCGACCCGGACGCGCTCGCCGCCCACATGGCGCGCGAGCTGGGCTCGCGCGGCGTCCTCTACTGCAACGTGGTGGAGCCGGAGATGGTGGCGACGCCGGCGGAGGGCGGCAGCGGCGGCGAGACGATGCGGATCCCGCACCGGCTGCGCGCCGTGCGGGAGGCGTTCGCCGGCACGCTGATGGTCGGCGGCGGGTACGACAGGGAGGAGGGCAACTGGGCCGTCGCCGGCGGCTACGCCGACCTCGTCGTCTACGGCCGCCTCTTCCTGGCCAACCCGGACCTCCCCCGGAGGTTCCGGCTCGGCGCGCCGCTCAACGGGTACGACAGGGCGACGTTCTACACCGCCGACCCCGTCGCCGGCTACACCGACTACCCGTTCCTCGACGACGACGGCGACGACGGCCTCGCGGCGTCGGCGGCGTCGGCGAGCTCCAACAAGAGCGGCGATCAGGACGGCGTTTAGCTCCGAGGCAGTACACTACTGCAACTGCACCTGAATAATTCTTAGCTTTTTTGCTGCTGCTTAAGCTTTAATAATGTTGACAATCGAGAGCTCTCTTCGTTGATCCAAACCAtat   ]
[+] EMBL CF321239             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCAACTGCACCTGAATAATTCTTAGCTTTTTTGCTGCTGCTTAAGCTTTAATAATGTTGACAATCGAGAGCTCTCTTCGTTGATCCAAACCAAAAAA ]
[-] EMBL CF321240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCAACTGCACCTGAATAATTCTTAGCTTTTTTGCTGCTGCTTAAGCTTTAATAATGTTGACAATCGAGAGCTCTCTTCGTTGATCCAAACCAAAAAAA]




>consensus_5427#0
TACTCATGGGTGTCTTTCAAAAGGGAGAAGATCAGAAAGGAGAGAGTGCAAATATGAAGC
CTATACCTCTTCTAAGTTCTTATGATATGGGGAAGTTCAACTTGTCACACAGGGTTGTGC
TAGCACCACTAACAAGATCTAGATCATATGACAATCTCCCGCAATCACATGCCATGGAAT
ACTACTCACAGAGGGCAACCAAAGGAGGCCTTCTAATTGCTGAAGCTACAGGTGTGTCAT
CTGATGCACAAGGGATGAGTGTAATCCCTCACACCCCAGGGATATGGACCAAGGAACAAG
TAGAGGCATGGAAGCCTATTGTAGATGCAGTGCATGCTAAGGGTGGTATATTTTTCTGTC
AAATCTGGCATGTTGGAAGAGCATCGGACATGGAGGAACGGCCCATCTCAAGCACAGATA
AACCCATAGAGAAGACTGAAGAGAACTACTTCCTGGGTTTCTCCACCCCAAGGAGCTTAA
CTGTTGAAGAGATCCCTGATGTCATCAAGCATTTCACACTTGCTGCCAAAAATGCCTTGG
AGGCTGGTTTTGATGGGGTTGAGGTTCACGCCGCAAACGGCTTCCTCCTGGACCAGTTCA
TGAAGGACGGCGTCAACGCCCGCGCCGACGAGTACGGCGGCGGCGTGGCGGGCCGCTGCC
GCTTCGCGCTGGAGGTGGTCGACGCCGTGGCGGCGGAGGCCGGGGCCGGCCGCACCGGCG
TCCGCCTCTCCCCGTACTCCCGCTGCCTCGACTGCGCCGACTCCGACCCGGACGCGCTCG
CCGCCCACATGGCGCGCGAGCTGGGCTCGCGCGGCGTCCTCTACTGCAACGTGGTGGAGC
CGGAGATGGTGGCGACGCCGGCGGAGGGCGGCAGCGGCGGCGAGACGATGCGGATCCCGC
ACCGGCTGCGCGCCGTGCGGGAGGCGTTCGCCGGCACGCTGATGGTCGGCGGCGGGTACG
ACAGGGAGGAGGGCAACTGGGCCGTCGCCGGCGGCTACGCCGACCTCGTCGTCTACGGCC
GCCTCTTCCTGGCCAACCCGGACCTCCCCCGGAGGTTCCGGCTCGGCGCGCCGCTCAACG
GGTACGACAGGGCGACGTTCTACACCGCCGACCCCGTCGCCGGCTACACCGACTACCCGT
TCCTCGACGACGACGGCGACGACGGCCTCGCGGCGTCGGCGGCGTCGGCGAGCTCCAACA
AGAGCGGCGATCAGGACGGCGTTTAGCTCCGAGGCAGTACACTACTGCAACTGCACCTGA
ATAATTCTTAGCTTTTTTGCTGCTGCTTAAGCTTTAATAATGTTGACAATCGAGAGCTCT
CTTCGTTGATCCAAACCAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)